Click here to switch to the map view.

The map label for this gene is rimM

Identifier: 17230304

GI number: 17230304

Start: 3421973

End: 3422713

Strand: Direct

Name: rimM

Synonym: alr2812

Alternate gene names: 17230304

Gene position: 3421973-3422713 (Clockwise)

Preceding gene: 161353747

Following gene: 17230306

Centisome position: 53.35

GC content: 51.82

Gene sequence:

>741_bases
ATGAAGCGTAAACAAGAAAGTAAAGGGGCAGGGGAGAAGAGGCAGGGAGCAGGGGGCAGGGGGCAGGGGGAGAAGAAGCA
GGGGAAGCAGGGGAGGCAGGGGAGGCAGGGGAGACAGGGAGAGAAGTCCCCAGTCCCCAGTCCCCAATCCCCAATCCCCA
ATCCCCAATTCACAACTCCCAATCCTGACGAATGGCTACAAATTGGTAAAATCGTTTCCGCCCAAGGCTTATCTGGGGAA
GTGCGAGTCTATCCTGATTCTGACTTTCCCGAACGCTTTGAAGTGCCGGGAACCCGATGGTTATTACGTCCGGGGCAAAC
GGAACCACAACCTATAGAATTGCTGCATGGTCGTTACCTGGAGAACAAAAACTTATATGTCCTCCAGTTAGCTGGCGTAG
AAAATCGCAGCCAGTCGGAAGAATTACGGGGTTGTATGTTGTTTGTGCCAGCCAGCGATCGCCCAGAACTAGGCGAAGAT
GAATATCATGTGGTCGATTTAATCGGCATGGAAGTCTTCTTACAAGCCTCCGGGGATTTAGTAGGGGCTGTAGTTGATGT
CATCCCGGCTGGTAATGATTTACTGGAAGTGAGCCTACATGAGCCAGTTACTAGCGACAAAAAACCAAAGACTGTGCTGA
TTCCTTTTGTCAAGGCGATCGCACCAGTAGTAGATTTACAAACCCGCCGCATCGAAATCACCCCCCCACCTGGGTTGTTG
GAGTTAGGAAGCGGAGTGTGA

Upstream 100 bases:

>100_bases
CAGCTTGACTGGTAGCGATACTGAAATCGCCCTTGGTATGCAGCGTCTAGCAAAAGCAGTCGAACAAATTTACCAGCGTA
CACCCATTAGTGCTTAAGTA

Downstream 100 bases:

>100_bases
GAAGAGGCAGAGGGGCAGGGAGCAGGGGAGGCAGGGGAGGCAGGGGGAGAAGTCCCCAATCCCCAATCCCCAATCCCCAG
TCCCCAATCCCCAATCCCCA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MKRKQESKGAGEKRQGAGGRGQGEKKQGKQGRQGRQGRQGEKSPVPSPQSPIPNPQFTTPNPDEWLQIGKIVSAQGLSGE
VRVYPDSDFPERFEVPGTRWLLRPGQTEPQPIELLHGRYLENKNLYVLQLAGVENRSQSEELRGCMLFVPASDRPELGED
EYHVVDLIGMEVFLQASGDLVGAVVDVIPAGNDLLEVSLHEPVTSDKKPKTVLIPFVKAIAPVVDLQTRRIEITPPPGLL
ELGSGV

Sequences:

>Translated_246_residues
MKRKQESKGAGEKRQGAGGRGQGEKKQGKQGRQGRQGRQGEKSPVPSPQSPIPNPQFTTPNPDEWLQIGKIVSAQGLSGE
VRVYPDSDFPERFEVPGTRWLLRPGQTEPQPIELLHGRYLENKNLYVLQLAGVENRSQSEELRGCMLFVPASDRPELGED
EYHVVDLIGMEVFLQASGDLVGAVVDVIPAGNDLLEVSLHEPVTSDKKPKTVLIPFVKAIAPVVDLQTRRIEITPPPGLL
ELGSGV
>Mature_246_residues
MKRKQESKGAGEKRQGAGGRGQGEKKQGKQGRQGRQGRQGEKSPVPSPQSPIPNPQFTTPNPDEWLQIGKIVSAQGLSGE
VRVYPDSDFPERFEVPGTRWLLRPGQTEPQPIELLHGRYLENKNLYVLQLAGVENRSQSEELRGCMLFVPASDRPELGED
EYHVVDLIGMEVFLQASGDLVGAVVDVIPAGNDLLEVSLHEPVTSDKKPKTVLIPFVKAIAPVVDLQTRRIEITPPPGLL
ELGSGV

Specific function: Essential for efficient processing of 16S rRNA. Probably part of the 30S subunit prior to or during the final step in the processing of 16S free 30S ribosomal subunits. It could be some accessory protein needed for efficient assembly of the 30S subunit. I

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimM family

Homologues:

Organism=Escherichia coli, GI87082136, Length=188, Percent_Identity=29.2553191489362, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_NOSS1 (Q8YTB1)

Other databases:

- EMBL:   BA000019
- PIR:   AE2157
- RefSeq:   NP_486852.1
- ProteinModelPortal:   Q8YTB1
- SMR:   Q8YTB1
- STRING:   Q8YTB1
- GeneID:   1106410
- GenomeReviews:   BA000019_GR
- KEGG:   ana:alr2812
- NMPDR:   fig|103690.1.peg.3119
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   YPDSDFP
- PhylomeDB:   Q8YTB1
- ProtClustDB:   PRK00122
- BioCyc:   NSP103690:ALR2812-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 26921; Mature: 26921

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKQESKGAGEKRQGAGGRGQGEKKQGKQGRQGRQGRQGEKSPVPSPQSPIPNPQFTTP
CCCCCCCCCCCCHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NPDEWLQIGKIVSAQGLSGEVRVYPDSDFPERFEVPGTRWLLRPGQTEPQPIELLHGRYL
CHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHCCCCCCEEEECCCCCCCCHHHHHCCEEE
ENKNLYVLQLAGVENRSQSEELRGCMLFVPASDRPELGEDEYHVVDLIGMEVFLQASGDL
CCCCEEEEEECCCCCCCHHHHCCEEEEEEECCCCCCCCCCCEEEEEEEEEEEEEECCCCH
VGAVVDVIPAGNDLLEVSLHEPVTSDKKPKTVLIPFVKAIAPVVDLQTRRIEITPPPGLL
HEEHHHHCCCCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHCCCCCEEEECCCCCHH
ELGSGV
HCCCCC
>Mature Secondary Structure
MKRKQESKGAGEKRQGAGGRGQGEKKQGKQGRQGRQGRQGEKSPVPSPQSPIPNPQFTTP
CCCCCCCCCCCCHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NPDEWLQIGKIVSAQGLSGEVRVYPDSDFPERFEVPGTRWLLRPGQTEPQPIELLHGRYL
CHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHCCCCCCEEEECCCCCCCCHHHHHCCEEE
ENKNLYVLQLAGVENRSQSEELRGCMLFVPASDRPELGEDEYHVVDLIGMEVFLQASGDL
CCCCEEEEEECCCCCCCHHHHCCEEEEEEECCCCCCCCCCCEEEEEEEEEEEEEECCCCH
VGAVVDVIPAGNDLLEVSLHEPVTSDKKPKTVLIPFVKAIAPVVDLQTRRIEITPPPGLL
HEEHHHHCCCCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHCCCCCEEEECCCCCHH
ELGSGV
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840