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The map label for this gene is rbpE

Identifier: 17230269

GI number: 17230269

Start: 3374343

End: 3374642

Strand: Reverse

Name: rbpE

Synonym: all2777

Alternate gene names: 17230269

Gene position: 3374642-3374343 (Counterclockwise)

Preceding gene: 17230270

Following gene: 17230268

Centisome position: 52.62

GC content: 47.67

Gene sequence:

>300_bases
ATGTCAATATACGTAGGGAATCTGTCCTACAGCGTCACACAAGACGACCTTACTAAAGTATTTTCCGAGTACGGTTCAGT
CACACGCGTTCAGTTACCCACAGATAGAGAAACCGGACGTGTTCGCGGTTTTGGTTTCGTAGAAATGGAATCATCAGCCG
CAGAAGATGCAGCCATTCAAGCTCTTGATGGCGCAGAATGGATGGGGCGTGTACTTAAAGTTAATAAAGCTCGTCCACGG
GAAGAGAAAGGCGCTCGTTCCGGTGGGGGTAGTTGGTCAAGAAATAATGGTGGCTACTAA

Upstream 100 bases:

>100_bases
TAGAGAAGTTAAGTTCGGTGATACGTATCTTGTTTTTAGTAATAATTTCAAGCGGCTCTCCGGATAAACATCTCTGCATC
AATGGATTCTGGAGAGTTTC

Downstream 100 bases:

>100_bases
CGTCAATACTGTTTCTTGAGAAAATTTAGTATTTCTTAAAAGCAAATCATCCCATAATCAGCAGATTAGTGATTCACTGA
TCTGCTTTTTTGTAAAATCA

Product: RNA binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 98

Protein sequence:

>99_residues
MSIYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQALDGAEWMGRVLKVNKARPR
EEKGARSGGGSWSRNNGGY

Sequences:

>Translated_99_residues
MSIYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQALDGAEWMGRVLKVNKARPR
EEKGARSGGGSWSRNNGGY
>Mature_98_residues
SIYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQALDGAEWMGRVLKVNKARPRE
EKGARSGGGSWSRNNGGY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain

Homologues:

Organism=Homo sapiens, GI14149675, Length=76, Percent_Identity=42.1052631578947, Blast_Score=70, Evalue=3e-13,
Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=40.7894736842105, Blast_Score=69, Evalue=6e-13,
Organism=Homo sapiens, GI4757926, Length=87, Percent_Identity=35.632183908046, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI35493811, Length=87, Percent_Identity=35.632183908046, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI45439316, Length=77, Percent_Identity=40.2597402597403, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI47271443, Length=77, Percent_Identity=42.8571428571429, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI5174637, Length=85, Percent_Identity=38.8235294117647, Blast_Score=63, Evalue=6e-11,
Organism=Homo sapiens, GI4502847, Length=75, Percent_Identity=40, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=46.25, Blast_Score=79, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=41.5584415584416, Blast_Score=73, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=40.7894736842105, Blast_Score=72, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=42.8571428571429, Blast_Score=70, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17539498, Length=78, Percent_Identity=37.1794871794872, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17542530, Length=86, Percent_Identity=37.2093023255814, Blast_Score=62, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324324, Length=78, Percent_Identity=44.8717948717949, Blast_Score=63, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17137710, Length=76, Percent_Identity=40.7894736842105, Blast_Score=68, Evalue=9e-13,
Organism=Drosophila melanogaster, GI19920866, Length=74, Percent_Identity=37.8378378378378, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24582412, Length=74, Percent_Identity=37.8378378378378, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24582417, Length=87, Percent_Identity=34.4827586206897, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI45550943, Length=87, Percent_Identity=34.4827586206897, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24582419, Length=87, Percent_Identity=34.4827586206897, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24582423, Length=87, Percent_Identity=34.4827586206897, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24582421, Length=87, Percent_Identity=34.4827586206897, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI17647301, Length=78, Percent_Identity=41.025641025641, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBPE_NOSS1 (Q9WX37)

Other databases:

- EMBL:   BA000019
- PIR:   AB2153
- RefSeq:   NP_486817.1
- HSSP:   Q9UNP9
- ProteinModelPortal:   Q9WX37
- SMR:   Q9WX37
- STRING:   Q9WX37
- GeneID:   1106375
- GenomeReviews:   BA000019_GR
- KEGG:   ana:all2777
- NMPDR:   fig|103690.1.peg.3084
- eggNOG:   COG0724
- HOGENOM:   HBG756718
- OMA:   FVEMESS
- PhylomeDB:   Q9WX37
- ProtClustDB:   CLSK286223
- BioCyc:   NSP103690:ALL2777-MONOMER
- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465
- Gene3D:   G3DSA:3.30.70.330
- PANTHER:   PTHR10432:SF31
- SMART:   SM00360

Pfam domain/function: PF00076 RRM_1

EC number: NA

Molecular weight: Translated: 10811; Mature: 10680

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQ
CEEEECCCEEEECHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHH
ALDGAEWMGRVLKVNKARPREEKGARSGGGSWSRNNGGY
HCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQ
EEEECCCEEEECHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHH
ALDGAEWMGRVLKVNKARPREEKGARSGGGSWSRNNGGY
HCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840