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The map label for this gene is cph2 [H]

Identifier: 17230191

GI number: 17230191

Start: 3290181

End: 3292943

Strand: Reverse

Name: cph2 [H]

Synonym: all2699

Alternate gene names: 17230191

Gene position: 3292943-3290181 (Counterclockwise)

Preceding gene: 17230192

Following gene: 17230185

Centisome position: 51.34

GC content: 40.83

Gene sequence:

>2763_bases
ATGTCACCGACCGCTAAACCAAATTCTCAGGTTAGTCTCAATCAAGAAAGTGTACTACGTCGTATTACGGCTCGGATTCG
TCAATCCTTGGAGTTGGAGGATATTATCACAGCGACAACGGCAGAGGTGCGCGCTCTCTTGGGAACTGACCGAGTGATGA
TTTATAAATTTCATCCAGATGGAAGCGGTCAGGTTATTGCTGAGTCTATTTATGAAAATCGTCTACCCTCATTGCTGGGC
TTGAATTTTCCGGCTGATGATATTCCACCCCAAGCCAGGGAACTTTTGGTCAAGTCTAAAGTACGTTCTATAGTTGATGT
TGCTACGGGGATGATTGGTCAAAGCCCTGTGCATGACTTAGAAACGGGGGAATTAATTTCCGAAGACATTTGTTACCGCC
CTGTAGACTCTTGTCATGTGGAATACTTAACAGCAATGGGTGTGAAATCTTCGGTAGTCGCGCCTATTTTTTGCCAAGAT
GAACTGTGGGGACTGTTGGTATCTCATCATTCCGAAAACCGGACGGTTTCAGAGGATGAGTTGGAAGCTATGCAGATGAT
TGTAGATCAACTTGCAGTAGCGATCGCCCAAAGTCATCTCCTCACCCAAGCCAGAAAAAAAGCCCAAAAAGAAGCCATCA
TTAACCGCATTATTACCCTACTGCACTCATTACCCACCATTGTCTTAAAGCCAGCTTTAGAAGCAGCTGTTGGGGCTTTT
GCTGGTGTTGGTGGTAGGCTGTGTTTAAGAAATCAAGCTGTTGAGTCACAACACGTTGTTCTTCGGAGTTTAGCAGAGTG
TTTAATTCCAGGTAGTAACTGCGTTCAACTTTATACCTGTGGACAACAGCCTATCACCCCAGAACAAACTATCTATCCGC
TCATTGAACAGTATAGGGTCTGGCAGGAACACTACACATCTCATCATGATATCTGGGCGATCGCTGATATTTATCAAGAT
TCCACGTTACGTAGCTTGCAAGCTGTTTTTCAACCAACTAAAATTCGCGGCATTTTAATCATTCCTCTAGAATATCGTCA
GCAGTTACTAGGTTATTTAAGTATTTTCCGCAATGAGATAGATACCGAAACTCTCTGGGCCGGACGCATTGATCAGGATC
AGAGGCAAATGTTTCCTCGTGTATCATTTAATTTATGGCGTGATGCCAAAAAGTCACAAGCTCAAGAATGGACAAGCGAA
GAGATTGAACTAGCAAAAGAAATCGGTCAACACTTTGCCTCAGCCATTCAGCAGTATGAACTATATCAACAAGTACAAGC
CTTTAACGAAAACTTAGAAAAACAAGTCCAGAAACGCACTCTTGAACTACGCCATACATCAGAACAACAACAAGCAGTGT
TTGGTGTAATTTCTAAGATTCGTGAATCGCTAGATACTAACACTATTTTTCAAATAACTACTAAAGAAGCTTGCCAATTA
ATTAAAGCGGATCGGGTTTCTGTATATCGCTTTGATAATGAATGGGGTGGCGAATTTGTTGGTGATTTTGAAGCCACTAG
CCCTCACTGGTCAAATGAATCAAAAATAAGTATTAATACCGTTTGGAACGACACCTACTTACAAAACACACAAGGAGGAC
GCTATCGCTACAATGAAACTTTTGCCGTAGATGACATCTATAAAGTGGGATTTACTCAATGTCATGTTGAAAATCTAGAG
CAATTTCAAATTTATGCTTTTGTCTTGGCTCCTATCTTTGTTGGTCAAAAACTGTGGGGTTTACTAGCAACTTATCAACA
TTCTGGCCCCCGTCAATGGAAACCTTCAGAAGTTAACTTCCTGACTCAAATTGCTGCCCAACTAGGAATAGCACTACAAC
AAGCTGAACTACTCAATCAAACCCAGCAACAGGCTCAAAAGTTAACTCAAGCGCTGCACCATTTGCAACAAACCCAAACT
CAACTCATCCAAACAGAGAAAATGTCTTCATTGGGTCAATTAGTAGCCGGAGTAGCCCATGAAATTAATAATCCAGTAAA
CTTTATTTATGGAAATCTCAGCCATGTAAGTGAATATGCTCAAAATTTACTCACTATGCTGGAACTTTATCAGCAAGAAT
TACCCAACCCTAGTGTAGAAATTCTAGAACAAGCAGACGAAATCGATCTAGAGTTTTTAGCTAAAGATTTACCCAAAACT
CTCTCCTCTATGCAAATTGGTGTCGAGCGCATCCGCCAAATTGTTATGTCTTTACGGACTTTCTCTCGCCTTGATGAAGC
AGAAATGAAAGCCGTAAATATTCATGAGGGTATTGATAGTACCTTGTTGATTTTGCAACACCGCTTGAAGGCCAAGCCGG
AAACTGCGGGGATTAAACTTACCAAAAAATACGCTGAGATTCCCTTGGTAGAATGCTACGCCGGACAGATGAATCAAGTA
TTTATGAATGTTTTGAGTAACGCCATTGATGCTCTAGAAGATTGTAAGGAAACAAAATCGCCAAATCATAATGGTGAAAT
TATCATCTCTACTAGCTTTGGTCAAATTAGAGACAGTATTCAAAGCATAGTAATTCGGATTATGGATAATGGCCCTGGCA
TACCAGAGGATTTGAGACTCAGAATATGCGATCCATTCTTTACTACAAAGCCAGTGGGTAAGGGTACAGGTTTGGGTTTG
TCTATTAGTTACAAAATTGTAGTAGATAGACATGGTGGGGTTTTCAAATGTGATTCTCAACTAGGTTCAGGTACAGAATT
TTGGATTGAAATTCCAATTCAACAAGTTAATGGTAATTGGTAA

Upstream 100 bases:

>100_bases
CGTACTTTTACTGTAGACAATGTAATATTTAAAATTTAAAAATATTTTTATATTTGTTAAGAATATCGTGATTTTCCTGA
ACTTAATTTAAAGAAAAGCA

Downstream 100 bases:

>100_bases
TTGGTCAATTCTTAAGTATGAATTACAAATACTATAGAAATCGTACTTGAATCTTGCTAGGTATACTGAGAACAAACCTT
TTGCTACAACAATCATAAGT

Product: two-component sensor histidine kinase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 920; Mature: 919

Protein sequence:

>920_residues
MSPTAKPNSQVSLNQESVLRRITARIRQSLELEDIITATTAEVRALLGTDRVMIYKFHPDGSGQVIAESIYENRLPSLLG
LNFPADDIPPQARELLVKSKVRSIVDVATGMIGQSPVHDLETGELISEDICYRPVDSCHVEYLTAMGVKSSVVAPIFCQD
ELWGLLVSHHSENRTVSEDELEAMQMIVDQLAVAIAQSHLLTQARKKAQKEAIINRIITLLHSLPTIVLKPALEAAVGAF
AGVGGRLCLRNQAVESQHVVLRSLAECLIPGSNCVQLYTCGQQPITPEQTIYPLIEQYRVWQEHYTSHHDIWAIADIYQD
STLRSLQAVFQPTKIRGILIIPLEYRQQLLGYLSIFRNEIDTETLWAGRIDQDQRQMFPRVSFNLWRDAKKSQAQEWTSE
EIELAKEIGQHFASAIQQYELYQQVQAFNENLEKQVQKRTLELRHTSEQQQAVFGVISKIRESLDTNTIFQITTKEACQL
IKADRVSVYRFDNEWGGEFVGDFEATSPHWSNESKISINTVWNDTYLQNTQGGRYRYNETFAVDDIYKVGFTQCHVENLE
QFQIYAFVLAPIFVGQKLWGLLATYQHSGPRQWKPSEVNFLTQIAAQLGIALQQAELLNQTQQQAQKLTQALHHLQQTQT
QLIQTEKMSSLGQLVAGVAHEINNPVNFIYGNLSHVSEYAQNLLTMLELYQQELPNPSVEILEQADEIDLEFLAKDLPKT
LSSMQIGVERIRQIVMSLRTFSRLDEAEMKAVNIHEGIDSTLLILQHRLKAKPETAGIKLTKKYAEIPLVECYAGQMNQV
FMNVLSNAIDALEDCKETKSPNHNGEIIISTSFGQIRDSIQSIVIRIMDNGPGIPEDLRLRICDPFFTTKPVGKGTGLGL
SISYKIVVDRHGGVFKCDSQLGSGTEFWIEIPIQQVNGNW

Sequences:

>Translated_920_residues
MSPTAKPNSQVSLNQESVLRRITARIRQSLELEDIITATTAEVRALLGTDRVMIYKFHPDGSGQVIAESIYENRLPSLLG
LNFPADDIPPQARELLVKSKVRSIVDVATGMIGQSPVHDLETGELISEDICYRPVDSCHVEYLTAMGVKSSVVAPIFCQD
ELWGLLVSHHSENRTVSEDELEAMQMIVDQLAVAIAQSHLLTQARKKAQKEAIINRIITLLHSLPTIVLKPALEAAVGAF
AGVGGRLCLRNQAVESQHVVLRSLAECLIPGSNCVQLYTCGQQPITPEQTIYPLIEQYRVWQEHYTSHHDIWAIADIYQD
STLRSLQAVFQPTKIRGILIIPLEYRQQLLGYLSIFRNEIDTETLWAGRIDQDQRQMFPRVSFNLWRDAKKSQAQEWTSE
EIELAKEIGQHFASAIQQYELYQQVQAFNENLEKQVQKRTLELRHTSEQQQAVFGVISKIRESLDTNTIFQITTKEACQL
IKADRVSVYRFDNEWGGEFVGDFEATSPHWSNESKISINTVWNDTYLQNTQGGRYRYNETFAVDDIYKVGFTQCHVENLE
QFQIYAFVLAPIFVGQKLWGLLATYQHSGPRQWKPSEVNFLTQIAAQLGIALQQAELLNQTQQQAQKLTQALHHLQQTQT
QLIQTEKMSSLGQLVAGVAHEINNPVNFIYGNLSHVSEYAQNLLTMLELYQQELPNPSVEILEQADEIDLEFLAKDLPKT
LSSMQIGVERIRQIVMSLRTFSRLDEAEMKAVNIHEGIDSTLLILQHRLKAKPETAGIKLTKKYAEIPLVECYAGQMNQV
FMNVLSNAIDALEDCKETKSPNHNGEIIISTSFGQIRDSIQSIVIRIMDNGPGIPEDLRLRICDPFFTTKPVGKGTGLGL
SISYKIVVDRHGGVFKCDSQLGSGTEFWIEIPIQQVNGNW
>Mature_919_residues
SPTAKPNSQVSLNQESVLRRITARIRQSLELEDIITATTAEVRALLGTDRVMIYKFHPDGSGQVIAESIYENRLPSLLGL
NFPADDIPPQARELLVKSKVRSIVDVATGMIGQSPVHDLETGELISEDICYRPVDSCHVEYLTAMGVKSSVVAPIFCQDE
LWGLLVSHHSENRTVSEDELEAMQMIVDQLAVAIAQSHLLTQARKKAQKEAIINRIITLLHSLPTIVLKPALEAAVGAFA
GVGGRLCLRNQAVESQHVVLRSLAECLIPGSNCVQLYTCGQQPITPEQTIYPLIEQYRVWQEHYTSHHDIWAIADIYQDS
TLRSLQAVFQPTKIRGILIIPLEYRQQLLGYLSIFRNEIDTETLWAGRIDQDQRQMFPRVSFNLWRDAKKSQAQEWTSEE
IELAKEIGQHFASAIQQYELYQQVQAFNENLEKQVQKRTLELRHTSEQQQAVFGVISKIRESLDTNTIFQITTKEACQLI
KADRVSVYRFDNEWGGEFVGDFEATSPHWSNESKISINTVWNDTYLQNTQGGRYRYNETFAVDDIYKVGFTQCHVENLEQ
FQIYAFVLAPIFVGQKLWGLLATYQHSGPRQWKPSEVNFLTQIAAQLGIALQQAELLNQTQQQAQKLTQALHHLQQTQTQ
LIQTEKMSSLGQLVAGVAHEINNPVNFIYGNLSHVSEYAQNLLTMLELYQQELPNPSVEILEQADEIDLEFLAKDLPKTL
SSMQIGVERIRQIVMSLRTFSRLDEAEMKAVNIHEGIDSTLLILQHRLKAKPETAGIKLTKKYAEIPLVECYAGQMNQVF
MNVLSNAIDALEDCKETKSPNHNGEIIISTSFGQIRDSIQSIVIRIMDNGPGIPEDLRLRICDPFFTTKPVGKGTGLGLS
ISYKIVVDRHGGVFKCDSQLGSGTEFWIEIPIQQVNGNW

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=285, Percent_Identity=30.1754385964912, Blast_Score=100, Evalue=7e-22,
Organism=Escherichia coli, GI1790436, Length=282, Percent_Identity=26.5957446808511, Blast_Score=86, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: 2.7.3.- [C]

Molecular weight: Translated: 103910; Mature: 103779

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS50109 HIS_KIN ; PS50046 PHYTOCHROME_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPTAKPNSQVSLNQESVLRRITARIRQSLELEDIITATTAEVRALLGTDRVMIYKFHPD
CCCCCCCCCCEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC
GSGQVIAESIYENRLPSLLGLNFPADDIPPQARELLVKSKVRSIVDVATGMIGQSPVHDL
CCCHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
ETGELISEDICYRPVDSCHVEYLTAMGVKSSVVAPIFCQDELWGLLVSHHSENRTVSEDE
CCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCHHH
LEAMQMIVDQLAVAIAQSHLLTQARKKAQKEAIINRIITLLHSLPTIVLKPALEAAVGAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGVGGRLCLRNQAVESQHVVLRSLAECLIPGSNCVQLYTCGQQPITPEQTIYPLIEQYRV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
WQEHYTSHHDIWAIADIYQDSTLRSLQAVFQPTKIRGILIIPLEYRQQLLGYLSIFRNEI
HHHHCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHC
DTETLWAGRIDQDQRQMFPRVSFNLWRDAKKSQAQEWTSEEIELAKEIGQHFASAIQQYE
CCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYQQVQAFNENLEKQVQKRTLELRHTSEQQQAVFGVISKIRESLDTNTIFQITTKEACQL
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHH
IKADRVSVYRFDNEWGGEFVGDFEATSPHWSNESKISINTVWNDTYLQNTQGGRYRYNET
HHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEECCCCCCEEECCE
FAVDDIYKVGFTQCHVENLEQFQIYAFVLAPIFVGQKLWGLLATYQHSGPRQWKPSEVNF
EEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
LTQIAAQLGIALQQAELLNQTQQQAQKLTQALHHLQQTQTQLIQTEKMSSLGQLVAGVAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EINNPVNFIYGNLSHVSEYAQNLLTMLELYQQELPNPSVEILEQADEIDLEFLAKDLPKT
HHCCCHHEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHH
LSSMQIGVERIRQIVMSLRTFSRLDEAEMKAVNIHEGIDSTLLILQHRLKAKPETAGIKL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEHHCCCCHHHHHHHHHHCCCCCCCCEEE
TKKYAEIPLVECYAGQMNQVFMNVLSNAIDALEDCKETKSPNHNGEIIISTSFGQIRDSI
EHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHH
QSIVIRIMDNGPGIPEDLRLRICDPFFTTKPVGKGTGLGLSISYKIVVDRHGGVFKCDSQ
HHHHHHHHCCCCCCCHHHHEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEECCC
LGSGTEFWIEIPIQQVNGNW
CCCCCEEEEEEEHHHCCCCC
>Mature Secondary Structure 
SPTAKPNSQVSLNQESVLRRITARIRQSLELEDIITATTAEVRALLGTDRVMIYKFHPD
CCCCCCCCCEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCC
GSGQVIAESIYENRLPSLLGLNFPADDIPPQARELLVKSKVRSIVDVATGMIGQSPVHDL
CCCHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
ETGELISEDICYRPVDSCHVEYLTAMGVKSSVVAPIFCQDELWGLLVSHHSENRTVSEDE
CCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCHHH
LEAMQMIVDQLAVAIAQSHLLTQARKKAQKEAIINRIITLLHSLPTIVLKPALEAAVGAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGVGGRLCLRNQAVESQHVVLRSLAECLIPGSNCVQLYTCGQQPITPEQTIYPLIEQYRV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
WQEHYTSHHDIWAIADIYQDSTLRSLQAVFQPTKIRGILIIPLEYRQQLLGYLSIFRNEI
HHHHCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHC
DTETLWAGRIDQDQRQMFPRVSFNLWRDAKKSQAQEWTSEEIELAKEIGQHFASAIQQYE
CCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYQQVQAFNENLEKQVQKRTLELRHTSEQQQAVFGVISKIRESLDTNTIFQITTKEACQL
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHH
IKADRVSVYRFDNEWGGEFVGDFEATSPHWSNESKISINTVWNDTYLQNTQGGRYRYNET
HHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEECCCCCCEEECCE
FAVDDIYKVGFTQCHVENLEQFQIYAFVLAPIFVGQKLWGLLATYQHSGPRQWKPSEVNF
EEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
LTQIAAQLGIALQQAELLNQTQQQAQKLTQALHHLQQTQTQLIQTEKMSSLGQLVAGVAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EINNPVNFIYGNLSHVSEYAQNLLTMLELYQQELPNPSVEILEQADEIDLEFLAKDLPKT
HHCCCHHEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHH
LSSMQIGVERIRQIVMSLRTFSRLDEAEMKAVNIHEGIDSTLLILQHRLKAKPETAGIKL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEHHCCCCHHHHHHHHHHCCCCCCCCEEE
TKKYAEIPLVECYAGQMNQVFMNVLSNAIDALEDCKETKSPNHNGEIIISTSFGQIRDSI
EHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHH
QSIVIRIMDNGPGIPEDLRLRICDPFFTTKPVGKGTGLGLSISYKIVVDRHGGVFKCDSQ
HHHHHHHHCCCCCCCHHHHEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEECCC
LGSGTEFWIEIPIQQVNGNW
CCCCCEEEEEEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]