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The map label for this gene is pchR [H]

Identifier: 17230072

GI number: 17230072

Start: 3082897

End: 3083886

Strand: Reverse

Name: pchR [H]

Synonym: all2580

Alternate gene names: 17230072

Gene position: 3083886-3082897 (Counterclockwise)

Preceding gene: 17230076

Following gene: 17230070

Centisome position: 48.08

GC content: 41.11

Gene sequence:

>990_bases
ATGACAGTCACTCTAACCCATGACGAATGGAATGAACTTCTTGGTGAGCCTATACACACAAACGAATTTGATTCTGGGTC
GAAGTTGACTGAATTTTTATGGAAAGTACCACGGAAATTGGGTGAAGGTTATCGTCAAGAAATGGATTTGCATTCCGATA
TCTGGCTGGACTTTACTGATTTGGAATATAACGATGATGTATTTATAACATCTCCTGAAGGTCAACATGATCTACATTTT
GATGTTTTGCTTTCAGGAAAAATTGTGACTGAACGCGGTCAATGTGGAGAAAGTTATACTTTGGTTTGTGGTGGTGGGAT
TCAACAGAAAACTGTTGCTCAAATCCAAAAAAATCAACGCCTTGTGGGGTTGACCATTGGGGTATCCCGTCAACTCCTAG
CAAATTTGTTTCCAGGAAAAGATGGAGACTTGATACCACAACTGCGGAAATTATTTAAGGATGATGATTTACATCCAGTA
TTTTATCCCCAAAGTACCCCAACAATATATGGAGTAGCGCAACAAATTATCAATTGTCCCTTTCATGGGGTGACAAAACA
AATATATTTGCAGGGGAAAATATTTGAGTTAATCGCCTTGCAGTTAGCTCCCCTTTTGGAGAATGAAGAGAAAAAGCAAA
CACCATCACTGAGACCAGATACGATTGCGCGAATTCATCAGGCTAGGGAAGTTTTGCGATCGCGGATGGACAATCCACCA
TCATCATTAGAGTTAGCACAAATAGTTGGAGTCAGCGATCGCACCCTTCGACGTGGTTTCCGGGAACTGTTTGGTACGAC
TGTATTTAGTTACCTAACTGTTATGCGGATGGAACAAGCCGAAAAACTTTTGCGGGAAGGAAAGCTTACTGTCGCAGAAG
TGGCGAATATTGTGGGTTATTCTCATTTAAGTTTATTCGCCAGCGTGTTTAAGCGGCAGTATGGTATCCGTCCCAAAGAA
TGTTTAATGGGGAAAAAGTCCGTATCTTGA

Upstream 100 bases:

>100_bases
TACTACAAGCAAATCAGTCTGGAAAAATGCTGCGATCGCTCTTTTCTTCTTTATTGAGAAATAATATCATTATTTGCATA
ATGTCAACTTAAAACCAGCT

Downstream 100 bases:

>100_bases
TAGTGGTGACGAAATATAGATAGATTTTTTTCCTGGCTATTTTGTATACTCACTTTTACAAATATTTAGTAATTATTTGC
AATAAGCTTGAATTCTTGGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MTVTLTHDEWNELLGEPIHTNEFDSGSKLTEFLWKVPRKLGEGYRQEMDLHSDIWLDFTDLEYNDDVFITSPEGQHDLHF
DVLLSGKIVTERGQCGESYTLVCGGGIQQKTVAQIQKNQRLVGLTIGVSRQLLANLFPGKDGDLIPQLRKLFKDDDLHPV
FYPQSTPTIYGVAQQIINCPFHGVTKQIYLQGKIFELIALQLAPLLENEEKKQTPSLRPDTIARIHQAREVLRSRMDNPP
SSLELAQIVGVSDRTLRRGFRELFGTTVFSYLTVMRMEQAEKLLREGKLTVAEVANIVGYSHLSLFASVFKRQYGIRPKE
CLMGKKSVS

Sequences:

>Translated_329_residues
MTVTLTHDEWNELLGEPIHTNEFDSGSKLTEFLWKVPRKLGEGYRQEMDLHSDIWLDFTDLEYNDDVFITSPEGQHDLHF
DVLLSGKIVTERGQCGESYTLVCGGGIQQKTVAQIQKNQRLVGLTIGVSRQLLANLFPGKDGDLIPQLRKLFKDDDLHPV
FYPQSTPTIYGVAQQIINCPFHGVTKQIYLQGKIFELIALQLAPLLENEEKKQTPSLRPDTIARIHQAREVLRSRMDNPP
SSLELAQIVGVSDRTLRRGFRELFGTTVFSYLTVMRMEQAEKLLREGKLTVAEVANIVGYSHLSLFASVFKRQYGIRPKE
CLMGKKSVS
>Mature_328_residues
TVTLTHDEWNELLGEPIHTNEFDSGSKLTEFLWKVPRKLGEGYRQEMDLHSDIWLDFTDLEYNDDVFITSPEGQHDLHFD
VLLSGKIVTERGQCGESYTLVCGGGIQQKTVAQIQKNQRLVGLTIGVSRQLLANLFPGKDGDLIPQLRKLFKDDDLHPVF
YPQSTPTIYGVAQQIINCPFHGVTKQIYLQGKIFELIALQLAPLLENEEKKQTPSLRPDTIARIHQAREVLRSRMDNPPS
SLELAQIVGVSDRTLRRGFRELFGTTVFSYLTVMRMEQAEKLLREGKLTVAEVANIVGYSHLSLFASVFKRQYGIRPKEC
LMGKKSVS

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37333; Mature: 37202

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVTLTHDEWNELLGEPIHTNEFDSGSKLTEFLWKVPRKLGEGYRQEMDLHSDIWLDFTD
CEEEEECHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
LEYNDDVFITSPEGQHDLHFDVLLSGKIVTERGQCGESYTLVCGGGIQQKTVAQIQKNQR
CCCCCCEEEECCCCCCCCEEEEEEECEEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCE
LVGLTIGVSRQLLANLFPGKDGDLIPQLRKLFKDDDLHPVFYPQSTPTIYGVAQQIINCP
EEEEEECHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCC
FHGVTKQIYLQGKIFELIALQLAPLLENEEKKQTPSLRPDTIARIHQAREVLRSRMDNPP
CCCCCHHHEECHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC
SSLELAQIVGVSDRTLRRGFRELFGTTVFSYLTVMRMEQAEKLLREGKLTVAEVANIVGY
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
SHLSLFASVFKRQYGIRPKECLMGKKSVS
HHHHHHHHHHHHHHCCCHHHHHCCCCCCC
>Mature Secondary Structure 
TVTLTHDEWNELLGEPIHTNEFDSGSKLTEFLWKVPRKLGEGYRQEMDLHSDIWLDFTD
EEEEECHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
LEYNDDVFITSPEGQHDLHFDVLLSGKIVTERGQCGESYTLVCGGGIQQKTVAQIQKNQR
CCCCCCEEEECCCCCCCCEEEEEEECEEEECCCCCCCCEEEEECCCCCHHHHHHHHHCCE
LVGLTIGVSRQLLANLFPGKDGDLIPQLRKLFKDDDLHPVFYPQSTPTIYGVAQQIINCP
EEEEEECHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCC
FHGVTKQIYLQGKIFELIALQLAPLLENEEKKQTPSLRPDTIARIHQAREVLRSRMDNPP
CCCCCHHHEECHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC
SSLELAQIVGVSDRTLRRGFRELFGTTVFSYLTVMRMEQAEKLLREGKLTVAEVANIVGY
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
SHLSLFASVFKRQYGIRPKECLMGKKSVS
HHHHHHHHHHHHHHCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]