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The map label for this gene is patB [C]

Identifier: 17230004

GI number: 17230004

Start: 3017835

End: 3019424

Strand: Reverse

Name: patB [C]

Synonym: all2512

Alternate gene names: 17230004

Gene position: 3019424-3017835 (Counterclockwise)

Preceding gene: 17230011

Following gene: 17230003

Centisome position: 47.08

GC content: 42.14

Gene sequence:

>1590_bases
ATGCCTTATACAATTCCTAACAACAGTTGCGTTGGATGTGACAACTGCCGTCCCCAATGTCCTACGGGTGCAATCAAAAT
CGAAAACAATAAATACTGGATAGATCCGTCTCTTTGTAATAATTGTGAGGGTTATTATGCTGAACCGCAGTGTGTGATAG
CTTGTCCAGTCAAATCCCCCATACCGTGGCAAGCAAAGAAGGGGCGATGTAAAGTGGAACCGCGAGATGCAACTAGCCCA
GACTTATTTTCTAATGGGAAGAATAACCCATTTGCATCGGCGATCGCAATTTGGGAAGCCTGCAACCTACTAGCGCAACG
TACAGCCCTGAACTGGGAAACTGACGAAGCAGGCTATCTCTGCTACAGTCGAGCAGTCAACCAAGGACGAGGAAAAATCG
CTTTTCATATCCAAGACCCGTTCCAAGTCAACGAAAAGGCCAAAGATGTAGCAGCCATTGAGGTATTTGATATTAGAGCT
GCTTGTATCCATTTAATTCTAGCTGCCCATGCTACAGCCTTAGATAAACCTTGGGAACAGGAGTTTACTATTGACGAACG
ACAGCTAGAAAAATATTTAGGGTTAGAGAAACGCAAAGACCTGAGCAAAGCCGCCAAACTAGCCCTAATGAAAAATCTTG
TGCAGCAAGCTTGCTCACTTATTATTTCTATGGACTGGCCTCAGCAAGGACAAGTGAAGGGGTTTTCAGTCGCCAATAGC
CGCTTGTGGGACTTAGTAAGTATTCAGCACCACTTTCAAGAAGATAAATTGGGTTGTAAATATCTCGTTGGGCTAACATT
TAAAGTCAAAGCCGGGATATGGAGCCAATATTTCTTAAACAAACAAGGATGCAAAGAACGCACTGCATTCTATCAATATG
GTAGCCTACCCAAGACCCTGCTAACCACAGTCATGAGTATTTGGCAGCAGCACGAAGGAGCCGTAAGATTAATGCTATGG
TTATTATTTAAAACCAAAATGGGTAAGGAACAACGCATCACAGTTCCTACCTTACTACGTATTGCTTATGGTCAAGAAAA
AGTCAATATTGCTACTAGACATCGAGAAGAACGCAAACGCCTATTACGGACATTTGAAAATGATTTAGAAGTACTAAATC
ATTTAGGAATTAAACCCATCTTCGATCCCATCACTTATCCTCTTGCTATCCAACCTTTATGGGCGAAATTAGTAGATATT
CCTGAAGACCCCGATGAAGCATTAGAGTTTTGGATTAATGATGCAGGTGGTGAAACTCGCCTCACTGATAGCGGCCCCCG
TGGTAAGTGGAATCTATTGATGAATGCGCGAATTTTATCCTTTGAACTACCACCAGAATGGGAACGACAAATTGCTGAAT
CAGAAAAAAAACAACGGCGAACTGCTAAGAGTAGACAAAAACTAAAAACCGCAGGTGATTTAGTTGGTGAGCAAATTTTG
CAAGCTCGCAAAAGTTTGAACTTATCTCAACGGGAATTAGCAAAGTTAACTGGTAAAAGCCAAAGCTGGATTCGAGACAT
AGAAAATGGTCGCTTAAAAGCAAAGCTAGAAGACCAGACACTTTTACGCAAAGTGTTACATATCGCTTAA

Upstream 100 bases:

>100_bases
GATAGCTAATTAAGTAAGTGGTTAGTTATCAATCAACAGGACACATCCAGGGGGAAACTTGAGCCAAACATCTCAACGAT
TAGGGTGGGAAGAAAGTTAT

Downstream 100 bases:

>100_bases
CCAATAAGTAGCAATTTCATAAATTAAACCGTCGATGTATGTTGTCATTTAGTCTCAAATTACTATTATTAATCGGCGGT
TATCTATAAAGCAAAAATAA

Product: transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Helix-Turn-Helix Domain Protein; Transcriptional Regulator PatB; 4Fe-4S Ferredoxin

Number of amino acids: Translated: 529; Mature: 528

Protein sequence:

>529_residues
MPYTIPNNSCVGCDNCRPQCPTGAIKIENNKYWIDPSLCNNCEGYYAEPQCVIACPVKSPIPWQAKKGRCKVEPRDATSP
DLFSNGKNNPFASAIAIWEACNLLAQRTALNWETDEAGYLCYSRAVNQGRGKIAFHIQDPFQVNEKAKDVAAIEVFDIRA
ACIHLILAAHATALDKPWEQEFTIDERQLEKYLGLEKRKDLSKAAKLALMKNLVQQACSLIISMDWPQQGQVKGFSVANS
RLWDLVSIQHHFQEDKLGCKYLVGLTFKVKAGIWSQYFLNKQGCKERTAFYQYGSLPKTLLTTVMSIWQQHEGAVRLMLW
LLFKTKMGKEQRITVPTLLRIAYGQEKVNIATRHREERKRLLRTFENDLEVLNHLGIKPIFDPITYPLAIQPLWAKLVDI
PEDPDEALEFWINDAGGETRLTDSGPRGKWNLLMNARILSFELPPEWERQIAESEKKQRRTAKSRQKLKTAGDLVGEQIL
QARKSLNLSQRELAKLTGKSQSWIRDIENGRLKAKLEDQTLLRKVLHIA

Sequences:

>Translated_529_residues
MPYTIPNNSCVGCDNCRPQCPTGAIKIENNKYWIDPSLCNNCEGYYAEPQCVIACPVKSPIPWQAKKGRCKVEPRDATSP
DLFSNGKNNPFASAIAIWEACNLLAQRTALNWETDEAGYLCYSRAVNQGRGKIAFHIQDPFQVNEKAKDVAAIEVFDIRA
ACIHLILAAHATALDKPWEQEFTIDERQLEKYLGLEKRKDLSKAAKLALMKNLVQQACSLIISMDWPQQGQVKGFSVANS
RLWDLVSIQHHFQEDKLGCKYLVGLTFKVKAGIWSQYFLNKQGCKERTAFYQYGSLPKTLLTTVMSIWQQHEGAVRLMLW
LLFKTKMGKEQRITVPTLLRIAYGQEKVNIATRHREERKRLLRTFENDLEVLNHLGIKPIFDPITYPLAIQPLWAKLVDI
PEDPDEALEFWINDAGGETRLTDSGPRGKWNLLMNARILSFELPPEWERQIAESEKKQRRTAKSRQKLKTAGDLVGEQIL
QARKSLNLSQRELAKLTGKSQSWIRDIENGRLKAKLEDQTLLRKVLHIA
>Mature_528_residues
PYTIPNNSCVGCDNCRPQCPTGAIKIENNKYWIDPSLCNNCEGYYAEPQCVIACPVKSPIPWQAKKGRCKVEPRDATSPD
LFSNGKNNPFASAIAIWEACNLLAQRTALNWETDEAGYLCYSRAVNQGRGKIAFHIQDPFQVNEKAKDVAAIEVFDIRAA
CIHLILAAHATALDKPWEQEFTIDERQLEKYLGLEKRKDLSKAAKLALMKNLVQQACSLIISMDWPQQGQVKGFSVANSR
LWDLVSIQHHFQEDKLGCKYLVGLTFKVKAGIWSQYFLNKQGCKERTAFYQYGSLPKTLLTTVMSIWQQHEGAVRLMLWL
LFKTKMGKEQRITVPTLLRIAYGQEKVNIATRHREERKRLLRTFENDLEVLNHLGIKPIFDPITYPLAIQPLWAKLVDIP
EDPDEALEFWINDAGGETRLTDSGPRGKWNLLMNARILSFELPPEWERQIAESEKKQRRTAKSRQKLKTAGDLVGEQILQ
ARKSLNLSQRELAKLTGKSQSWIRDIENGRLKAKLEDQTLLRKVLHIA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60374; Mature: 60243

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS50943 HTH_CROC1 ; PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYTIPNNSCVGCDNCRPQCPTGAIKIENNKYWIDPSLCNNCEGYYAEPQCVIACPVKSP
CCCCCCCCCEECCCCCCCCCCCCCEEEECCEEEECHHHHCCCCCCCCCCCEEEECCCCCC
IPWQAKKGRCKVEPRDATSPDLFSNGKNNPFASAIAIWEACNLLAQRTALNWETDEAGYL
CCCCCCCCEEEECCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
CYSRAVNQGRGKIAFHIQDPFQVNEKAKDVAAIEVFDIRAACIHLILAAHATALDKPWEQ
HHHHHHHCCCCEEEEEECCCHHCCCHHHHEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCC
EFTIDERQLEKYLGLEKRKDLSKAAKLALMKNLVQQACSLIISMDWPQQGQVKGFSVANS
CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEECCH
RLWDLVSIQHHFQEDKLGCKYLVGLTFKVKAGIWSQYFLNKQGCKERTAFYQYGSLPKTL
HHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCCHHHH
LTTVMSIWQQHEGAVRLMLWLLFKTKMGKEQRITVPTLLRIAYGQEKVNIATRHREERKR
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
LLRTFENDLEVLNHLGIKPIFDPITYPLAIQPLWAKLVDIPEDPDEALEFWINDAGGETR
HHHHHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHHHCCCCCHHHHHHHHHCCCCCCEE
LTDSGPRGKWNLLMNARILSFELPPEWERQIAESEKKQRRTAKSRQKLKTAGDLVGEQIL
ECCCCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QARKSLNLSQRELAKLTGKSQSWIRDIENGRLKAKLEDQTLLRKVLHIA
HHHHHCCCCHHHHHHHHCCCHHHHHHHCCCEEEEEECHHHHHHHHHHCC
>Mature Secondary Structure 
PYTIPNNSCVGCDNCRPQCPTGAIKIENNKYWIDPSLCNNCEGYYAEPQCVIACPVKSP
CCCCCCCCEECCCCCCCCCCCCCEEEECCEEEECHHHHCCCCCCCCCCCEEEECCCCCC
IPWQAKKGRCKVEPRDATSPDLFSNGKNNPFASAIAIWEACNLLAQRTALNWETDEAGYL
CCCCCCCCEEEECCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
CYSRAVNQGRGKIAFHIQDPFQVNEKAKDVAAIEVFDIRAACIHLILAAHATALDKPWEQ
HHHHHHHCCCCEEEEEECCCHHCCCHHHHEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCC
EFTIDERQLEKYLGLEKRKDLSKAAKLALMKNLVQQACSLIISMDWPQQGQVKGFSVANS
CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCEEECCH
RLWDLVSIQHHFQEDKLGCKYLVGLTFKVKAGIWSQYFLNKQGCKERTAFYQYGSLPKTL
HHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCHHHHHHHCCCCCHHHHHHHHHCCCHHHH
LTTVMSIWQQHEGAVRLMLWLLFKTKMGKEQRITVPTLLRIAYGQEKVNIATRHREERKR
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
LLRTFENDLEVLNHLGIKPIFDPITYPLAIQPLWAKLVDIPEDPDEALEFWINDAGGETR
HHHHHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHHHCCCCCHHHHHHHHHCCCCCCEE
LTDSGPRGKWNLLMNARILSFELPPEWERQIAESEKKQRRTAKSRQKLKTAGDLVGEQIL
ECCCCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QARKSLNLSQRELAKLTGKSQSWIRDIENGRLKAKLEDQTLLRKVLHIA
HHHHHCCCCHHHHHHHHCCCHHHHHHHCCCEEEEEECHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA