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The map label for this gene is petA [H]

Identifier: 17229944

GI number: 17229944

Start: 2948253

End: 2949254

Strand: Reverse

Name: petA [H]

Synonym: all2452

Alternate gene names: 17229944

Gene position: 2949254-2948253 (Counterclockwise)

Preceding gene: 17229945

Following gene: 17229943

Centisome position: 45.98

GC content: 47.21

Gene sequence:

>1002_bases
ATGAGAAATGCTTGTACAAGAGCGAGGTTAACTCGCACTGCTAGAGCGATGGTAAAAACATTGTTCATAGCGATCGCCAG
CGTGACATTTTTCTTCACCAGCGACTTAGCCCTTCCCCAATCAGCTGCTGCATATCCTTTCTGGGCGCAGCAAACTTACC
CAGAAACCCCCCGCGAACCGACAGGTAGAATTGTTTGCGCTAACTGTCACCTAGCAGCAAAGCCCACAGAAGTAGAAGTT
CCTCAATCCGTACTACCCGACACCGTATTTAAAGCAGTTGTCAAAATCCCTTACGACACCAGCGTGCAACAAGTTGGTGC
TGATGGCTCTAAGGTCGGCTTAAACGTCGGTGCTGTACTGATGTTACCCGAAGGCTTCAAGATTGCTCCTGAAGACCGCA
TTCCCGAAGAACTGAAAGAAGAAATCGGCGATGTTTACTTCCAACCCTACGGCGAAGATAAAGACAACATCGTCATTGTC
GGGCCTTTACCCGGTGAACAGTATCAGGAAATCGTCTTCCCTGTTCTTTCTCCCAACCCCGCCAACGACAAGAACATTCA
CTTCGGTAAATATTCAGTTCATGTTGGTGGCAACCGGGGACGCGGACAAGTTTATCCTACAGGTGAAAAGAGCAACAACA
ACCTTTATAGCGCTGCTGCTACCGGTACAATTAGCAAGATTGCTAAACAAGAAGGCGAAGATGGTAGCGTTAAATATTTA
GTAGACATCAAAACTGAGTCTGGAGAGGTTGTCAGCGACACTATTCCCGCAGGCCCAGAACTGATTGTTTCTGAAGGACA
AGCAGTGACAGCAGGCGACGCTTTGACCAATAACCCTAACGTTGGTGGTTTCGGTCAACTAGACGCAGAAATTGTTCTCC
AAGATGCTAATAGAGTTGGCTGGTTGATTGCTTTCGTTGCTCTGGTGATGTTAGCTCAAGTCATGCTAGTTCTGAAGAAG
AAGCAGGTGGAAAAAGTCCAAGCTGCGGAAATGAATTTCTAA

Upstream 100 bases:

>100_bases
TGTCAGTAGTCAGTTGTTAGTTGTGAATTTGCCACTGACCACTGACCACTGACCACTGACTATTGACTCTTGACTAAATT
CAATCGTTGCCCCTATAGAG

Downstream 100 bases:

>100_bases
ATTCTCTGATAAATCAATACTTTTAAGACAGGCTACAGCCTGTCTTTTTTATTTCTTAAAGTCCTGAAGAAGCAAGTTTC
ACAGTCAAACAAGAAAGATG

Product: apocytochrome f

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MRNACTRARLTRTARAMVKTLFIAIASVTFFFTSDLALPQSAAAYPFWAQQTYPETPREPTGRIVCANCHLAAKPTEVEV
PQSVLPDTVFKAVVKIPYDTSVQQVGADGSKVGLNVGAVLMLPEGFKIAPEDRIPEELKEEIGDVYFQPYGEDKDNIVIV
GPLPGEQYQEIVFPVLSPNPANDKNIHFGKYSVHVGGNRGRGQVYPTGEKSNNNLYSAAATGTISKIAKQEGEDGSVKYL
VDIKTESGEVVSDTIPAGPELIVSEGQAVTAGDALTNNPNVGGFGQLDAEIVLQDANRVGWLIAFVALVMLAQVMLVLKK
KQVEKVQAAEMNF

Sequences:

>Translated_333_residues
MRNACTRARLTRTARAMVKTLFIAIASVTFFFTSDLALPQSAAAYPFWAQQTYPETPREPTGRIVCANCHLAAKPTEVEV
PQSVLPDTVFKAVVKIPYDTSVQQVGADGSKVGLNVGAVLMLPEGFKIAPEDRIPEELKEEIGDVYFQPYGEDKDNIVIV
GPLPGEQYQEIVFPVLSPNPANDKNIHFGKYSVHVGGNRGRGQVYPTGEKSNNNLYSAAATGTISKIAKQEGEDGSVKYL
VDIKTESGEVVSDTIPAGPELIVSEGQAVTAGDALTNNPNVGGFGQLDAEIVLQDANRVGWLIAFVALVMLAQVMLVLKK
KQVEKVQAAEMNF
>Mature_333_residues
MRNACTRARLTRTARAMVKTLFIAIASVTFFFTSDLALPQSAAAYPFWAQQTYPETPREPTGRIVCANCHLAAKPTEVEV
PQSVLPDTVFKAVVKIPYDTSVQQVGADGSKVGLNVGAVLMLPEGFKIAPEDRIPEELKEEIGDVYFQPYGEDKDNIVIV
GPLPGEQYQEIVFPVLSPNPANDKNIHFGKYSVHVGGNRGRGQVYPTGEKSNNNLYSAAATGTISKIAKQEGEDGSVKYL
VDIKTESGEVVSDTIPAGPELIVSEGQAVTAGDALTNNPNVGGFGQLDAEIVLQDANRVGWLIAFVALVMLAQVMLVLKK
KQVEKVQAAEMNF

Specific function: Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome f family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002325
- InterPro:   IPR011054 [H]

Pfam domain/function: PF01333 Apocytochr_F_C [H]

EC number: NA

Molecular weight: Translated: 35925; Mature: 35925

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS51010 CYTF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNACTRARLTRTARAMVKTLFIAIASVTFFFTSDLALPQSAAAYPFWAQQTYPETPREP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
TGRIVCANCHLAAKPTEVEVPQSVLPDTVFKAVVKIPYDTSVQQVGADGSKVGLNVGAVL
CCCEEEECCEEECCCCCCCCCHHHCHHHHHHHHHCCCCCCCHHHHCCCCCEECCCCCEEE
MLPEGFKIAPEDRIPEELKEEIGDVYFQPYGEDKDNIVIVGPLPGEQYQEIVFPVLSPNP
ECCCCCEECCCCCCCHHHHHHHHHEEECCCCCCCCCEEEEECCCCHHHHHHEEEEECCCC
ANDKNIHFGKYSVHVGGNRGRGQVYPTGEKSNNNLYSAAATGTISKIAKQEGEDGSVKYL
CCCCCEEEEEEEEEECCCCCCCCEEECCCCCCCCEEEEHHHHHHHHHHHHCCCCCCEEEE
VDIKTESGEVVSDTIPAGPELIVSEGQAVTAGDALTNNPNVGGFGQLDAEIVLQDANRVG
EEEECCCCCEEECCCCCCCCEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCHHH
WLIAFVALVMLAQVMLVLKKKQVEKVQAAEMNF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRNACTRARLTRTARAMVKTLFIAIASVTFFFTSDLALPQSAAAYPFWAQQTYPETPREP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
TGRIVCANCHLAAKPTEVEVPQSVLPDTVFKAVVKIPYDTSVQQVGADGSKVGLNVGAVL
CCCEEEECCEEECCCCCCCCCHHHCHHHHHHHHHCCCCCCCHHHHCCCCCEECCCCCEEE
MLPEGFKIAPEDRIPEELKEEIGDVYFQPYGEDKDNIVIVGPLPGEQYQEIVFPVLSPNP
ECCCCCEECCCCCCCHHHHHHHHHEEECCCCCCCCCEEEEECCCCHHHHHHEEEEECCCC
ANDKNIHFGKYSVHVGGNRGRGQVYPTGEKSNNNLYSAAATGTISKIAKQEGEDGSVKYL
CCCCCEEEEEEEEEECCCCCCCCEEECCCCCCCCEEEEHHHHHHHHHHHHCCCCCCEEEE
VDIKTESGEVVSDTIPAGPELIVSEGQAVTAGDALTNNPNVGGFGQLDAEIVLQDANRVG
EEEECCCCCEEECCCCCCCCEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCHHH
WLIAFVALVMLAQVMLVLKKKQVEKVQAAEMNF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA