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The map label for this gene is yhfR [C]

Identifier: 17229718

GI number: 17229718

Start: 2669096

End: 2669836

Strand: Direct

Name: yhfR [C]

Synonym: alr2226

Alternate gene names: 17229718

Gene position: 2669096-2669836 (Clockwise)

Preceding gene: 17229707

Following gene: 17229723

Centisome position: 41.62

GC content: 42.24

Gene sequence:

>741_bases
ATGAACGAAATAATGCCAATTTATGCCCAGATTGCTGACAAACTACGACAAAAGATTCATCAAGGGATTTATCAACTAGG
GGAACAACTACCAACGGAAACCAAGTTAGCAGAACAGTTTGCAGTCAATCGCCATACCCTCAGACAAGCGATCGCTCTCC
TGAAAACTGAAGGATTGTTACGAGTTGACCGAGGACGGGGGACTTTTGTCGCAGCCAAAACCATCCGCTATGCTATTGGT
AAGCGTGTGCGTTATAACCAAACCCTGAAAGCGCAAGGGTTACAAGCAAGGTTTCAACTGCTACGGGTTTTAGAAGTACC
TGCTGATGATGCTGTTGCGAAAGGATTAGAGATTTCTTTTGGTGAGCCAGTAGCGTTAATTGAACGTTTAGGTTTAGCAG
ATGAAGAACCCATTAGTGTGGGTAGTGGATATTTTCCCCTCAAGCGATTCCCTGATTTTTTAGAACCGGAAAATATCAAG
ATTTTGCAAGAACAGCAATCAATTTCTCAGTTTTTACAGCAGGTATATGGATGTGATCATATCCGCCGTAGTACCTGCGT
TTCGGCTCGTCTAGTCCAACCTCAAGATGCAAAATGGCTACAAATACCACTCAATCAACCCATCTTGTTAGCAGAATCAG
TCAACGTTGATCAAGCAGGTAATGTGATTGAATATGGCGTAACTCGACTGCGAGGCGATCGTATGGAGTTATTTTTTGAA
AATAATTTATTTGATGATTGA

Upstream 100 bases:

>100_bases
AGGGGGAAAAGTTAAAGCCTCTCTCCTTGTAGGGGAGAGGTTTGGAGAGGGGTTTTCCAGATCCCGTCATCAGTCAACCC
TATTTATTGATAATCGATAC

Downstream 100 bases:

>100_bases
TGACTGATGACTGGTGACTGGTGACTGATAACTATGGTCGTTATAATTTACAGGATAATCAAAGATTTATAAAAATTGCT
AGAGGTTCTTTAAACGAAAG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MNEIMPIYAQIADKLRQKIHQGIYQLGEQLPTETKLAEQFAVNRHTLRQAIALLKTEGLLRVDRGRGTFVAAKTIRYAIG
KRVRYNQTLKAQGLQARFQLLRVLEVPADDAVAKGLEISFGEPVALIERLGLADEEPISVGSGYFPLKRFPDFLEPENIK
ILQEQQSISQFLQQVYGCDHIRRSTCVSARLVQPQDAKWLQIPLNQPILLAESVNVDQAGNVIEYGVTRLRGDRMELFFE
NNLFDD

Sequences:

>Translated_246_residues
MNEIMPIYAQIADKLRQKIHQGIYQLGEQLPTETKLAEQFAVNRHTLRQAIALLKTEGLLRVDRGRGTFVAAKTIRYAIG
KRVRYNQTLKAQGLQARFQLLRVLEVPADDAVAKGLEISFGEPVALIERLGLADEEPISVGSGYFPLKRFPDFLEPENIK
ILQEQQSISQFLQQVYGCDHIRRSTCVSARLVQPQDAKWLQIPLNQPILLAESVNVDQAGNVIEYGVTRLRGDRMELFFE
NNLFDD
>Mature_246_residues
MNEIMPIYAQIADKLRQKIHQGIYQLGEQLPTETKLAEQFAVNRHTLRQAIALLKTEGLLRVDRGRGTFVAAKTIRYAIG
KRVRYNQTLKAQGLQARFQLLRVLEVPADDAVAKGLEISFGEPVALIERLGLADEEPISVGSGYFPLKRFPDFLEPENIK
ILQEQQSISQFLQQVYGCDHIRRSTCVSARLVQPQDAKWLQIPLNQPILLAESVNVDQAGNVIEYGVTRLRGDRMELFFE
NNLFDD

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=235, Percent_Identity=28.5106382978723, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1790540, Length=242, Percent_Identity=30.9917355371901, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786950, Length=228, Percent_Identity=26.7543859649123, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790118, Length=225, Percent_Identity=27.5555555555556, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788418, Length=231, Percent_Identity=24.6753246753247, Blast_Score=77, Evalue=9e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012702
- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27933; Mature: 27933

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEIMPIYAQIADKLRQKIHQGIYQLGEQLPTETKLAEQFAVNRHTLRQAIALLKTEGLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCE
RVDRGRGTFVAAKTIRYAIGKRVRYNQTLKAQGLQARFQLLRVLEVPADDAVAKGLEISF
EEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC
GEPVALIERLGLADEEPISVGSGYFPLKRFPDFLEPENIKILQEQQSISQFLQQVYGCDH
CCHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHH
IRRSTCVSARLVQPQDAKWLQIPLNQPILLAESVNVDQAGNVIEYGVTRLRGDRMELFFE
HHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEC
NNLFDD
CCCCCC
>Mature Secondary Structure
MNEIMPIYAQIADKLRQKIHQGIYQLGEQLPTETKLAEQFAVNRHTLRQAIALLKTEGLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCE
RVDRGRGTFVAAKTIRYAIGKRVRYNQTLKAQGLQARFQLLRVLEVPADDAVAKGLEISF
EEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC
GEPVALIERLGLADEEPISVGSGYFPLKRFPDFLEPENIKILQEQQSISQFLQQVYGCDH
CCHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHH
IRRSTCVSARLVQPQDAKWLQIPLNQPILLAESVNVDQAGNVIEYGVTRLRGDRMELFFE
HHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEC
NNLFDD
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481431; 9889346 [H]