Click here to switch to the map view.

The map label for this gene is 17229688

Identifier: 17229688

GI number: 17229688

Start: 2637832

End: 2638230

Strand: Reverse

Name: 17229688

Synonym: all2196

Alternate gene names: NA

Gene position: 2638230-2637832 (Counterclockwise)

Preceding gene: 17229689

Following gene: 17229687

Centisome position: 41.13

GC content: 45.86

Gene sequence:

>399_bases
ATGCTGCTGATTGATACATCGGTCTGGATTGGCGTGTTTCGCGATCGCAGTGATCAAGTTCGCCAACAACTTGAAACTCT
GATCGCCGAGCGTGAAGTTTTACTCACCCGATTCACTCAGCTTGAATTACTTCAAGGCAGCCTAAACGAGCAAGAATGGA
CTCTCCTTTCTACTTACCTCGAAACACAAAATTACGTTGAACTCACAGTTCAGTCTTGGCAAGCAGCAGCCCGCATCTAT
TTTGACTTGCGCCGCCAAGGGCTTATCGTTCGTAGTCCAATCGATTGCTGTATTGCTCAAGTAGCACTGGAAAATAATTT
GCTTTTGATCCATAATGATCGTGACTTTGAAACCATTGCTCAGGTGCGCGCTCTTCAACACCTTCGTTTTCAGCCTTGA

Upstream 100 bases:

>100_bases
GAACTCGTGCGATCGCGCCGCAAAAAAAATCTCCTCGACCTCGCGGGGCAAATTCAGTTCGCTCCTGACTTTGACCATAA
AGCCCTGCGTGAAACTCGTC

Downstream 100 bases:

>100_bases
ATCCTCTAATCGTACTTGAAGGCTATCTGTGGGGTAAGCCAGCTAACAATACGTTGGTGCGGACGGTACAAAGTTTGTCG
GTTGGTGTTCGAGTTTATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MLLIDTSVWIGVFRDRSDQVRQQLETLIAEREVLLTRFTQLELLQGSLNEQEWTLLSTYLETQNYVELTVQSWQAAARIY
FDLRRQGLIVRSPIDCCIAQVALENNLLLIHNDRDFETIAQVRALQHLRFQP

Sequences:

>Translated_132_residues
MLLIDTSVWIGVFRDRSDQVRQQLETLIAEREVLLTRFTQLELLQGSLNEQEWTLLSTYLETQNYVELTVQSWQAAARIY
FDLRRQGLIVRSPIDCCIAQVALENNLLLIHNDRDFETIAQVRALQHLRFQP
>Mature_132_residues
MLLIDTSVWIGVFRDRSDQVRQQLETLIAEREVLLTRFTQLELLQGSLNEQEWTLLSTYLETQNYVELTVQSWQAAARIY
FDLRRQGLIVRSPIDCCIAQVALENNLLLIHNDRDFETIAQVRALQHLRFQP

Specific function: Unknown

COG id: COG1487

COG function: function code R; Predicted nucleic acid-binding protein, contains PIN domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2010 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002716 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 15516; Mature: 15516

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLIDTSVWIGVFRDRSDQVRQQLETLIAEREVLLTRFTQLELLQGSLNEQEWTLLSTYL
CEEEECHHEEHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
ETQNYVELTVQSWQAAARIYFDLRRQGLIVRSPIDCCIAQVALENNLLLIHNDRDFETIA
HCCCCEEEHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCEEEEECCCCHHHHH
QVRALQHLRFQP
HHHHHHHHCCCC
>Mature Secondary Structure
MLLIDTSVWIGVFRDRSDQVRQQLETLIAEREVLLTRFTQLELLQGSLNEQEWTLLSTYL
CEEEECHHEEHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
ETQNYVELTVQSWQAAARIYFDLRRQGLIVRSPIDCCIAQVALENNLLLIHNDRDFETIA
HCCCCEEEHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCEEEEECCCCHHHHH
QVRALQHLRFQP
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]