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The map label for this gene is pchR [H]

Identifier: 17229670

GI number: 17229670

Start: 2618247

End: 2619245

Strand: Direct

Name: pchR [H]

Synonym: alr2178

Alternate gene names: 17229670

Gene position: 2618247-2619245 (Clockwise)

Preceding gene: 17229668

Following gene: 17229671

Centisome position: 40.82

GC content: 40.94

Gene sequence:

>999_bases
ATGGCGATCGCACTCACACAACGCGAGGAAGAGGAACTTTGGGATGAAGCAGAACAAACTAGTCTGCAACCTTCATCTAT
AGAACCATTTGAATTTTACGTGGAAATGCCGAGTTTTTTGGGAAGTGGCTATCATAAAGAAATTGAATTGCATCCCGAAC
TTTATCTGATAATTATTGATTGTGAGTACCGCGATGACTATGTACTCAAACGTCCAGCTTCAAATCATCCCTTGCAATTT
GGTGTATTCCTCTCAGGAATAATTAAAGATGACGATAGTAGCTGGATTGGGGAAAGAAATGCGGTTATTTCTGGGGCTGG
AATTCAACGGGAGATGAAGGTAAAACACTTTCAATCTCCCCGGATATTGGGGATTAACATTGAGATGTCCCCTGATTTAT
TAGCAACTTTTTTCCCTGGAAAAGATGGAGGGATTCCCCCAGAATTAAAATTATTGGCAAAGGAGGATGATTGGCAAACC
TTAGTTTATCCAGAAATGACTCCAGCCGTAAGATTTTTGACACAACAAATATTTAATTGTCCCTATCAAGGAATCACAAA
ACGAATTTATTTACAAGCGAAGGTGCTGGAGTTAATTGCTTTACAGGTATCTCCTCTCCTTACTGGTGAAGGATTTTCCC
AACCATTACCATTAAAATCAGATACCATTGCCAGGATTCACCATGCCAAACAAATCCTTCTTTCTCGCTTAGAAAATCCT
CCGTTGTTGATAGAATTAGCTGGGTTGGTGGGGGTAAGCGATCGCACTTTACGCAGAGGTTTTCGAGAATTATTTGGCAC
AACTGTATTCGGTTATCTTACTCAAATGCGGATGGAGAAAGCCGAACAGTTGTTGCGCGGAACTAATACGAATGTTGCCG
AAGTTGCCAATTTAGTCGGTTATAGCCATCTTGGTCACTTTGCAGCAGCCTTTAAAAGAAAGTATGGCATTACACCAAGT
CAATGTTTGTTGGGTAAAAAGTCCGTTTCGGGACTGTGA

Upstream 100 bases:

>100_bases
GCTTATGCACACCAAGCAACAGAGTCGCCTAACTAACTTTCCTTATTAATTGCGAAATAGTATCATTAAGTTGAACTACT
TCAGCAGTAATCATGGCACT

Downstream 100 bases:

>100_bases
TGCCGTTTGGGGATAGACTCATAGATTGGCATTTCCTTACACTATTTGCTGTGACTGTTAGAACTTTTATGCAATAAGCT
GGCTGGATGGGACAGGCTTG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MAIALTQREEEELWDEAEQTSLQPSSIEPFEFYVEMPSFLGSGYHKEIELHPELYLIIIDCEYRDDYVLKRPASNHPLQF
GVFLSGIIKDDDSSWIGERNAVISGAGIQREMKVKHFQSPRILGINIEMSPDLLATFFPGKDGGIPPELKLLAKEDDWQT
LVYPEMTPAVRFLTQQIFNCPYQGITKRIYLQAKVLELIALQVSPLLTGEGFSQPLPLKSDTIARIHHAKQILLSRLENP
PLLIELAGLVGVSDRTLRRGFRELFGTTVFGYLTQMRMEKAEQLLRGTNTNVAEVANLVGYSHLGHFAAAFKRKYGITPS
QCLLGKKSVSGL

Sequences:

>Translated_332_residues
MAIALTQREEEELWDEAEQTSLQPSSIEPFEFYVEMPSFLGSGYHKEIELHPELYLIIIDCEYRDDYVLKRPASNHPLQF
GVFLSGIIKDDDSSWIGERNAVISGAGIQREMKVKHFQSPRILGINIEMSPDLLATFFPGKDGGIPPELKLLAKEDDWQT
LVYPEMTPAVRFLTQQIFNCPYQGITKRIYLQAKVLELIALQVSPLLTGEGFSQPLPLKSDTIARIHHAKQILLSRLENP
PLLIELAGLVGVSDRTLRRGFRELFGTTVFGYLTQMRMEKAEQLLRGTNTNVAEVANLVGYSHLGHFAAAFKRKYGITPS
QCLLGKKSVSGL
>Mature_331_residues
AIALTQREEEELWDEAEQTSLQPSSIEPFEFYVEMPSFLGSGYHKEIELHPELYLIIIDCEYRDDYVLKRPASNHPLQFG
VFLSGIIKDDDSSWIGERNAVISGAGIQREMKVKHFQSPRILGINIEMSPDLLATFFPGKDGGIPPELKLLAKEDDWQTL
VYPEMTPAVRFLTQQIFNCPYQGITKRIYLQAKVLELIALQVSPLLTGEGFSQPLPLKSDTIARIHHAKQILLSRLENPP
LLIELAGLVGVSDRTLRRGFRELFGTTVFGYLTQMRMEKAEQLLRGTNTNVAEVANLVGYSHLGHFAAAFKRKYGITPSQ
CLLGKKSVSGL

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37364; Mature: 37232

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIALTQREEEELWDEAEQTSLQPSSIEPFEFYVEMPSFLGSGYHKEIELHPELYLIIID
CEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHEEECHHHHCCCCCCEEEECCEEEEEEEE
CEYRDDYVLKRPASNHPLQFGVFLSGIIKDDDSSWIGERNAVISGAGIQREMKVKHFQSP
ECCCCCEEEECCCCCCCEEEEEEEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHCCCC
RILGINIEMSPDLLATFFPGKDGGIPPELKLLAKEDDWQTLVYPEMTPAVRFLTQQIFNC
CEEEEEEEECCCCEEEECCCCCCCCCHHEEEEEECCCCCEEECCCCCHHHHHHHHHHHCC
PYQGITKRIYLQAKVLELIALQVSPLLTGEGFSQPLPLKSDTIARIHHAKQILLSRLENP
CHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
PLLIELAGLVGVSDRTLRRGFRELFGTTVFGYLTQMRMEKAEQLLRGTNTNVAEVANLVG
CEEEEECCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
YSHLGHFAAAFKRKYGITPSQCLLGKKSVSGL
HHHHHHHHHHHHHHCCCCHHHHHCCCHHCCCC
>Mature Secondary Structure 
AIALTQREEEELWDEAEQTSLQPSSIEPFEFYVEMPSFLGSGYHKEIELHPELYLIIID
EEEECCCHHHHHHHHHHHCCCCCCCCCCHHHEEECHHHHCCCCCCEEEECCEEEEEEEE
CEYRDDYVLKRPASNHPLQFGVFLSGIIKDDDSSWIGERNAVISGAGIQREMKVKHFQSP
ECCCCCEEEECCCCCCCEEEEEEEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHCCCC
RILGINIEMSPDLLATFFPGKDGGIPPELKLLAKEDDWQTLVYPEMTPAVRFLTQQIFNC
CEEEEEEEECCCCEEEECCCCCCCCCHHEEEEEECCCCCEEECCCCCHHHHHHHHHHHCC
PYQGITKRIYLQAKVLELIALQVSPLLTGEGFSQPLPLKSDTIARIHHAKQILLSRLENP
CHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
PLLIELAGLVGVSDRTLRRGFRELFGTTVFGYLTQMRMEKAEQLLRGTNTNVAEVANLVG
CEEEEECCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
YSHLGHFAAAFKRKYGITPSQCLLGKKSVSGL
HHHHHHHHHHHHHHCCCCHHHHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]