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The map label for this gene is ydcM [C]

Identifier: 17229660

GI number: 17229660

Start: 2603383

End: 2604570

Strand: Direct

Name: ydcM [C]

Synonym: alr2168

Alternate gene names: 17229660

Gene position: 2603383-2604570 (Clockwise)

Preceding gene: 17229652

Following gene: 17229661

Centisome position: 40.59

GC content: 41.67

Gene sequence:

>1188_bases
ATGAAAGCCAGATATCAATTCCGGTTCTACCCGACAGACCAACAAAAGCAACTGTTAGCGCAGTTGTTTGGTTGCGTTCG
CGTAGTCTGGAATGATGCTCTGGCTGTTTGCAAACAGTCCGAAAAGCTTCCTAGTAACAACGACTTGCAAAAGCTGGTGA
TTACGCAAGCTAAAAAGACTGATGAGCGTTCATGGTTATCTGATGTTTCTAATATCCCTTTACAACAATCTGTTGCTGAT
TTAGGAGTTGCTTACAAAAACTTTTTTGATTCACTCAAGGGTAAACGCAAAGGCAAAAAAGTAGGCACACCCAAGTTTAA
GAAGAAGACAAGTAAACAATCAGCCAGATTTAGAATTGGTGGTTTTTCGATTAAAGGAGATGAAGTCTACCTAGCTAAAA
TTGGCAACGTCAAGCCTCTAAAGTCAAGACAATTACCATCTGCACCAAGTAGTGTAACAGTCATTAAAGACTGTGCTAAT
CGTTATTTTCTTAGCTTTGTCGTAGAAGTAGAGCCTATTCAATCTGAAGCTAAAAACCAAAGCATTGGTATTGATTTAGG
AATCAAAACTTTTGCGGTTATGAGTAATGGAGAAAAAGCAATCAGTCCCGATTACTCAAAGAAAGACCGCAAAATTCGCA
AACTGCAACGCAAGATAGCAAGACAACAGAAGGGGTCTAAGCGTCGTGAACGAACCCGCTTAAGAATCGCCAAGCAACAC
AACAAAATTGCGGATACCCGAAAAGACTTCCTTCACAAACTTTCAACCAAAGTAGTTAGTGAAAACCAAGCTATTGTTTT
GGAAGATTTGAATGTGTCAGGAATGGTCAAGAATCGTAAGTTAGCAAGAATAATTAGCTTGCAGGGATGGAGAGAGTTTC
GGGTATTTTGTGAGAGTAAATCTGAAAAACTTAATCGGGATTTCAGGGTCATTAGTAGATGGGAACCTACTAGCCAAACT
TGTTCTTGTTGTGGGTATAGGTGGGGCAAGATTGATTTATCTGTGCGCTCAGTGTTGTGCTTAAACTGCAATACTGAACA
CGACAGAGATGAGAACGCATCCCAAAATATAAAAATGGTCGGCATGGGGCATCGGCACGACCTTAAACGGGCGCAGAGGA
CAGGTAAGACTGGTTCGCCAGCACAGTCCGGTGAAGCGTCAAGAATCACCGCACCTTTAGGTCGGTGA

Upstream 100 bases:

>100_bases
TGTAGACCCTTCGGGTGAGCAGTCGCTACAAGTCGGGGAACCCGCCCAACGCGCTGCTCACCAATGTATAATACTTCTAC
AGACCAATTATACATTATCA

Downstream 100 bases:

>100_bases
GTATGTCAAAATTCTAGCGACCCTCTGGGTAACCAGTGCTAGTAAGATTTGTAGTGAAGTATGTTGAGTTAAAGTTATTT
TGGGTCACACTTCTAGAATG

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MKARYQFRFYPTDQQKQLLAQLFGCVRVVWNDALAVCKQSEKLPSNNDLQKLVITQAKKTDERSWLSDVSNIPLQQSVAD
LGVAYKNFFDSLKGKRKGKKVGTPKFKKKTSKQSARFRIGGFSIKGDEVYLAKIGNVKPLKSRQLPSAPSSVTVIKDCAN
RYFLSFVVEVEPIQSEAKNQSIGIDLGIKTFAVMSNGEKAISPDYSKKDRKIRKLQRKIARQQKGSKRRERTRLRIAKQH
NKIADTRKDFLHKLSTKVVSENQAIVLEDLNVSGMVKNRKLARIISLQGWREFRVFCESKSEKLNRDFRVISRWEPTSQT
CSCCGYRWGKIDLSVRSVLCLNCNTEHDRDENASQNIKMVGMGHRHDLKRAQRTGKTGSPAQSGEASRITAPLGR

Sequences:

>Translated_395_residues
MKARYQFRFYPTDQQKQLLAQLFGCVRVVWNDALAVCKQSEKLPSNNDLQKLVITQAKKTDERSWLSDVSNIPLQQSVAD
LGVAYKNFFDSLKGKRKGKKVGTPKFKKKTSKQSARFRIGGFSIKGDEVYLAKIGNVKPLKSRQLPSAPSSVTVIKDCAN
RYFLSFVVEVEPIQSEAKNQSIGIDLGIKTFAVMSNGEKAISPDYSKKDRKIRKLQRKIARQQKGSKRRERTRLRIAKQH
NKIADTRKDFLHKLSTKVVSENQAIVLEDLNVSGMVKNRKLARIISLQGWREFRVFCESKSEKLNRDFRVISRWEPTSQT
CSCCGYRWGKIDLSVRSVLCLNCNTEHDRDENASQNIKMVGMGHRHDLKRAQRTGKTGSPAQSGEASRITAPLGR
>Mature_395_residues
MKARYQFRFYPTDQQKQLLAQLFGCVRVVWNDALAVCKQSEKLPSNNDLQKLVITQAKKTDERSWLSDVSNIPLQQSVAD
LGVAYKNFFDSLKGKRKGKKVGTPKFKKKTSKQSARFRIGGFSIKGDEVYLAKIGNVKPLKSRQLPSAPSSVTVIKDCAN
RYFLSFVVEVEPIQSEAKNQSIGIDLGIKTFAVMSNGEKAISPDYSKKDRKIRKLQRKIARQQKGSKRRERTRLRIAKQH
NKIADTRKDFLHKLSTKVVSENQAIVLEDLNVSGMVKNRKLARIISLQGWREFRVFCESKSEKLNRDFRVISRWEPTSQT
CSCCGYRWGKIDLSVRSVLCLNCNTEHDRDENASQNIKMVGMGHRHDLKRAQRTGKTGSPAQSGEASRITAPLGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=369, Percent_Identity=31.4363143631436, Blast_Score=139, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44898; Mature: 44898

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKARYQFRFYPTDQQKQLLAQLFGCVRVVWNDALAVCKQSEKLPSNNDLQKLVITQAKKT
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
DERSWLSDVSNIPLQQSVADLGVAYKNFFDSLKGKRKGKKVGTPKFKKKTSKQSARFRIG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCHHHHHHCCCCCEEEEC
GFSIKGDEVYLAKIGNVKPLKSRQLPSAPSSVTVIKDCANRYFLSFVVEVEPIQSEAKNQ
CEEECCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEHHEEEECCHHHHCCCC
SIGIDLGIKTFAVMSNGEKAISPDYSKKDRKIRKLQRKIARQQKGSKRRERTRLRIAKQH
CCCEEECHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
NKIADTRKDFLHKLSTKVVSENQAIVLEDLNVSGMVKNRKLARIISLQGWREFRVFCESK
HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCHHHHHHHHHCH
SEKLNRDFRVISRWEPTSQTCSCCGYRWGKIDLSVRSVLCLNCNTEHDRDENASQNIKMV
HHHHCCCHHHHCCCCCCHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCEEEE
GMGHRHDLKRAQRTGKTGSPAQSGEASRITAPLGR
ECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKARYQFRFYPTDQQKQLLAQLFGCVRVVWNDALAVCKQSEKLPSNNDLQKLVITQAKKT
CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
DERSWLSDVSNIPLQQSVADLGVAYKNFFDSLKGKRKGKKVGTPKFKKKTSKQSARFRIG
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCCHHHHHHCCCCCEEEEC
GFSIKGDEVYLAKIGNVKPLKSRQLPSAPSSVTVIKDCANRYFLSFVVEVEPIQSEAKNQ
CEEECCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEHHEEEECCHHHHCCCC
SIGIDLGIKTFAVMSNGEKAISPDYSKKDRKIRKLQRKIARQQKGSKRRERTRLRIAKQH
CCCEEECHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
NKIADTRKDFLHKLSTKVVSENQAIVLEDLNVSGMVKNRKLARIISLQGWREFRVFCESK
HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCHHHHHHHHHCH
SEKLNRDFRVISRWEPTSQTCSCCGYRWGKIDLSVRSVLCLNCNTEHDRDENASQNIKMV
HHHHCCCHHHHCCCCCCHHHHHHHCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCEEEE
GMGHRHDLKRAQRTGKTGSPAQSGEASRITAPLGR
ECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]