Click here to switch to the map view.

The map label for this gene is pchR [H]

Identifier: 17229651

GI number: 17229651

Start: 2592076

End: 2593098

Strand: Reverse

Name: pchR [H]

Synonym: all2159

Alternate gene names: 17229651

Gene position: 2593098-2592076 (Counterclockwise)

Preceding gene: 17229653

Following gene: 17229650

Centisome position: 40.43

GC content: 45.16

Gene sequence:

>1023_bases
ATGACATTAATCCTCAATAAATCGGACTGGGATGAGATGTGGCAGCAGACTGCCGCTTCTCATGTGCAGAAGTTTGTCTC
TGATGGGTTTGAGGAAGTTTTGCAGATGCCGCAAGTTGCTGGTCAGGGTTATTCTTGTTACATAGAGCTATCACCTGGGG
TATCGTTGGGTTTCGCGGATTGCGAATACCACCAGGATTTGATGATCAAGATACCTGCCCACGACCATTTAATTCAAATT
AATATTTTGTTATCGGGATTCTTTGACTGTGATGAGGTTCACCCGCGTTTGGATGGGACGCGCAGTTATTTTTCTGGTAG
TGGGGTTTCGCCCGGCGTTACCGAAAAGCATCAAGGTGGAGGGCGTTTGAGTTTTGTGAATGTAGAAATTGAGCCAGAGG
TGCTGGAATCTTTTTTGGACGATGGACAACGGCAGCTAGACAATATCAAGCAACTATTCCAGGGTGAGGATTGGAAGGTG
GCTTTTTACCCAAAGGTGACAGCAAAAGTGCGATCGCTTGCTCAAGAATTATGGCATCCACCCTATCGCGGTGCAGCCAA
ACGCCTCTATTTACAAGCCAAAGTGTTTGAGTTATTAGCCTTGTATCTAGATTTAATTGCTGACAATCAAGAACCGATTC
GCAACTTACCAAAACTCAAACCAGATACAATTGCCCGTATCCACCACGCCAAAGAAATTTTAACCGCTCAAATCGAGCAT
CCACCATCACTATCAACATTAGCTCAACTGGTAGGCGTGAGCGATCGCACCCTACAACGCGGTTTTCAAATAATTTTTCA
GACAACGGTTGTAGGCTATTTGACACAGTTGCGCTTAGATAAAGCCGAACAATTATTACGCCAAGGAGATGTCTGCAACA
AGCAACGCCAACCAACAGTAGCAGAAGTAGCAAATCTCGTAGGCTATGGGCATTTAGGTCATTTTTCGGCGGCATTTAAG
CGGCGATTTGGCATCACACCTAGACAATGTTTGGCAGGTCACAAGACGGTTTTTGGATCATAA

Upstream 100 bases:

>100_bases
GTTAGGAGGTTGCTGCATCGGATTAATGAATGAAGATGAGCAGGTGTGATATGATAATTGCTAATTAATAGCAACTATCT
AGTTTTGCGTCTGTAGCCCC

Downstream 100 bases:

>100_bases
CTGGCGGTTTTTGGATAGACACCCTGCGAGTAACTTCCCTATACTACTTTAACTGCTATTAAGAATTATTAGCAGTAATA
GGCTGACTTTGATAAGTTTA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MTLILNKSDWDEMWQQTAASHVQKFVSDGFEEVLQMPQVAGQGYSCYIELSPGVSLGFADCEYHQDLMIKIPAHDHLIQI
NILLSGFFDCDEVHPRLDGTRSYFSGSGVSPGVTEKHQGGGRLSFVNVEIEPEVLESFLDDGQRQLDNIKQLFQGEDWKV
AFYPKVTAKVRSLAQELWHPPYRGAAKRLYLQAKVFELLALYLDLIADNQEPIRNLPKLKPDTIARIHHAKEILTAQIEH
PPSLSTLAQLVGVSDRTLQRGFQIIFQTTVVGYLTQLRLDKAEQLLRQGDVCNKQRQPTVAEVANLVGYGHLGHFSAAFK
RRFGITPRQCLAGHKTVFGS

Sequences:

>Translated_340_residues
MTLILNKSDWDEMWQQTAASHVQKFVSDGFEEVLQMPQVAGQGYSCYIELSPGVSLGFADCEYHQDLMIKIPAHDHLIQI
NILLSGFFDCDEVHPRLDGTRSYFSGSGVSPGVTEKHQGGGRLSFVNVEIEPEVLESFLDDGQRQLDNIKQLFQGEDWKV
AFYPKVTAKVRSLAQELWHPPYRGAAKRLYLQAKVFELLALYLDLIADNQEPIRNLPKLKPDTIARIHHAKEILTAQIEH
PPSLSTLAQLVGVSDRTLQRGFQIIFQTTVVGYLTQLRLDKAEQLLRQGDVCNKQRQPTVAEVANLVGYGHLGHFSAAFK
RRFGITPRQCLAGHKTVFGS
>Mature_339_residues
TLILNKSDWDEMWQQTAASHVQKFVSDGFEEVLQMPQVAGQGYSCYIELSPGVSLGFADCEYHQDLMIKIPAHDHLIQIN
ILLSGFFDCDEVHPRLDGTRSYFSGSGVSPGVTEKHQGGGRLSFVNVEIEPEVLESFLDDGQRQLDNIKQLFQGEDWKVA
FYPKVTAKVRSLAQELWHPPYRGAAKRLYLQAKVFELLALYLDLIADNQEPIRNLPKLKPDTIARIHHAKEILTAQIEHP
PSLSTLAQLVGVSDRTLQRGFQIIFQTTVVGYLTQLRLDKAEQLLRQGDVCNKQRQPTVAEVANLVGYGHLGHFSAAFKR
RFGITPRQCLAGHKTVFGS

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38239; Mature: 38108

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLILNKSDWDEMWQQTAASHVQKFVSDGFEEVLQMPQVAGQGYSCYIELSPGVSLGFAD
CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEECCCC
CEYHQDLMIKIPAHDHLIQINILLSGFFDCDEVHPRLDGTRSYFSGSGVSPGVTEKHQGG
CCCCCCEEEEECCCCCEEEEEEEECCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCC
GRLSFVNVEIEPEVLESFLDDGQRQLDNIKQLFQGEDWKVAFYPKVTAKVRSLAQELWHP
CEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCC
PYRGAAKRLYLQAKVFELLALYLDLIADNQEPIRNLPKLKPDTIARIHHAKEILTAQIEH
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
PPSLSTLAQLVGVSDRTLQRGFQIIFQTTVVGYLTQLRLDKAEQLLRQGDVCNKQRQPTV
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
AEVANLVGYGHLGHFSAAFKRRFGITPRQCLAGHKTVFGS
HHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCC
>Mature Secondary Structure 
TLILNKSDWDEMWQQTAASHVQKFVSDGFEEVLQMPQVAGQGYSCYIELSPGVSLGFAD
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEECCCC
CEYHQDLMIKIPAHDHLIQINILLSGFFDCDEVHPRLDGTRSYFSGSGVSPGVTEKHQGG
CCCCCCEEEEECCCCCEEEEEEEECCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCC
GRLSFVNVEIEPEVLESFLDDGQRQLDNIKQLFQGEDWKVAFYPKVTAKVRSLAQELWHP
CEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCC
PYRGAAKRLYLQAKVFELLALYLDLIADNQEPIRNLPKLKPDTIARIHHAKEILTAQIEH
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
PPSLSTLAQLVGVSDRTLQRGFQIIFQTTVVGYLTQLRLDKAEQLLRQGDVCNKQRQPTV
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
AEVANLVGYGHLGHFSAAFKRRFGITPRQCLAGHKTVFGS
HHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]