| Definition | Nostoc sp. PCC 7120, complete genome. |
|---|---|
| Accession | NC_003272 |
| Length | 6,413,771 |
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The map label for this gene is recJ [H]
Identifier: 17229481
GI number: 17229481
Start: 2383665
End: 2386004
Strand: Reverse
Name: recJ [H]
Synonym: all1989
Alternate gene names: 17229481
Gene position: 2386004-2383665 (Counterclockwise)
Preceding gene: 17229482
Following gene: 17229480
Centisome position: 37.2
GC content: 42.56
Gene sequence:
>2340_bases ATGCAGTGGATTATAACAGCAACTGAACAGCCACCAGAATGGTTTATTCAAGCAGTGAAAAAGTATGTATCTGCATCTAA AGGGATATATGCAGCACAATTACTATGGCAACGGGGAGTAAAAGAAGAATCACAATTAGCAGCCTTTATTAACTTTAAAA ATTATCAACCAGCCAGCGCCTTTGAGTTTGCTCAAGAGATGCAGTTGGCAGTGGCAAGATTACAACAGGCACGCAACAAA GGTGAAAAAATTACCATTTGGGGAGACTTTGACGCTGATGGAATTACTTCGACTGCTGTTTTGTGGGATGGTTTAGGTCA ATTTTTTCAGCAACATCAACAGTTGAATTATTACATTCCTAATCGACTCAAAGAATCCCACGGATTGAATGAATCTGGTA TCGCTAATTTAGCCAAACAAGGCTGTACATTAATCGTCACCTGCGACACAGGTAGTACAAATATTGATGAAATTATCTAT GCCCAAAAATTAGGTATAGATGTCATAGTTACAGACCATCACACCTTACCTACAGAACGTCCACCAGTCACAGCAATTAT TAATCCCCGTTATTTACCCAACGAACATCAGCTATTTCATTTATCGGGCGTGGGAGTAGCTTATAAATTAATAGAAGCCC TTTATAAATCCTTACCTGATGTACCCCAAAATCCTTTAGAAGATTTACTCGATTTAGTTGCAGTCGGATTAATCGCTGAT TTGGTGCAACTTAGTGGTGATTGTCGTTATTTAGCACAGTTGGGTATTCAGAGACTGCAAACTGATTTTCAACAACCACC AGCCGCCAGGCGTAGACCAGGAGTAGGGCGATTATTAGAATTGTGCCAAAGGAATGGCGATCGCCCCACAGATATTTCTT TTGGTTTAGGACCACGCATTAACGCCGTTAGCCGCATTCAAGGCGATGCTAGTTTCTGCGTAGAACTTTTAACCAGTCGT GATATCAATCGCTGTCATCAATTAGCCGAAGTCACAGAACTAGCAAACACCAGGCGCAAATCTTTACAGAAAGATGTACA AGCACAAGTCACCCAAAAACTCACTCAGTTAGACTTATCCACCACCAGCGTCATTGTCCTTGAAGACCCCCAATGGCCAG CAGGCGTATTAGGCTTAGTCGCTGGACAAGTCGCCCAAGAAACAGGTCGCCCCACTATCTTGTTAAGTACTGAGGGACTG GGCAATGAGGAGGATTCTTCCCCATCTCCAATCCCTAATCTCCAACTCCTCGCTCGTGGTTCCGCCCGTTCAGTGAATTC CGTCGATTTATACCAATTGGTGAAACACCAAGCACATCTATTACATCGCTTTGGCGGTCATCCTTTTGCTGCTGGGTTGA GTTTGTTAGCCGAAAACATCCCTCTCTTTACCCAAGCAATTAATCAGCAACTACGGCAAACCTTGGGTAGTGTCAATCTC ACCCCAGCAGTACAAGCAGATATAGTAGTCACAGTTGCAGACTTAGGTAAAGAGCTATTTTTAGAATTAAAACTGCTAGA ACCTTGCGGTATGGGCAACCCCGTTCCCAAACTCTTGATTCAAAATTGCTGGTTTGAAAATGCTTGGCATCGCAATCAAC AAGATTGGCAAGGTAAAAAAGTACAATATATTAAAGCCGAATTTGATATCCGTGACGACTCCAGCAAAAATCCCTTTCCC GGTATTTGGTGGGGACATTACAAAGATGAATTACCCATAGGTAGATGTGATTGCATAGCGGAATTAGACTACAACACCTT CAAAAAACGCTACGAAATCAGATTAATCGCCCTCCGTCCCAATCCCAACTCAGAACTCAAAACCCAACACTCAACTCAAA TTCTTGACTGGCGCAACCTCCCCAATCCCCAATACCCAGTACCCAATCCCCAGTCCCTCATCCTAGAAGAATGCCCCATG AATTGGGATGATTTACGCGCCTGGTGGCGGCGATCGCTCTACAATAATCAACAATTAGTCCTTGCTTGGTCTAAACCCAA TCTGCAACCACCGCAAGAAATTTGGTTGACCCTAGTTGGTATTGCCAAATATCTCAGTCGAACAAATCAATTAGCCACCC GCACACAAATTTTAGAAAAACTGAAAATTAGCGACAGAAGCTTACTTTTAGGCATCAAAGCTTTAAAATATTGGGGATTT ACAGTCACAAGACAAGACCGGTCTTTGCAATTCATCTGGAGTTCTAATAGTGTAGTTGAAAGCAATGCCGACGCTGCTAT TGCAGAATTTTTAGCAACCATCAGCGAAGAACAATTTCAGCAGAAATATTTTGCAGAAGTACCTTTGTCTACTATTGTGG CAATGGTTAACAGGGTTTAA
Upstream 100 bases:
>100_bases AAAGCAGATGGAGGTGCTAACGAGGTAGTCATTAATCCCTTAATCAATGAAACCCAAATTAATGATGAACAAAGTCCAAT TTAGTTTTTGAATTAATTCA
Downstream 100 bases:
>100_bases CATGAATTAAATTTCATAAATTATGAATAATTTTGTGACAGCCAAAAATTCTTGGGATGCAACTTTATATCAAGATAAAC ACGATTTCGTATGGCAATAT
Product: single-strand-DNA-specific exonuclease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 779; Mature: 779
Protein sequence:
>779_residues MQWIITATEQPPEWFIQAVKKYVSASKGIYAAQLLWQRGVKEESQLAAFINFKNYQPASAFEFAQEMQLAVARLQQARNK GEKITIWGDFDADGITSTAVLWDGLGQFFQQHQQLNYYIPNRLKESHGLNESGIANLAKQGCTLIVTCDTGSTNIDEIIY AQKLGIDVIVTDHHTLPTERPPVTAIINPRYLPNEHQLFHLSGVGVAYKLIEALYKSLPDVPQNPLEDLLDLVAVGLIAD LVQLSGDCRYLAQLGIQRLQTDFQQPPAARRRPGVGRLLELCQRNGDRPTDISFGLGPRINAVSRIQGDASFCVELLTSR DINRCHQLAEVTELANTRRKSLQKDVQAQVTQKLTQLDLSTTSVIVLEDPQWPAGVLGLVAGQVAQETGRPTILLSTEGL GNEEDSSPSPIPNLQLLARGSARSVNSVDLYQLVKHQAHLLHRFGGHPFAAGLSLLAENIPLFTQAINQQLRQTLGSVNL TPAVQADIVVTVADLGKELFLELKLLEPCGMGNPVPKLLIQNCWFENAWHRNQQDWQGKKVQYIKAEFDIRDDSSKNPFP GIWWGHYKDELPIGRCDCIAELDYNTFKKRYEIRLIALRPNPNSELKTQHSTQILDWRNLPNPQYPVPNPQSLILEECPM NWDDLRAWWRRSLYNNQQLVLAWSKPNLQPPQEIWLTLVGIAKYLSRTNQLATRTQILEKLKISDRSLLLGIKALKYWGF TVTRQDRSLQFIWSSNSVVESNADAAIAEFLATISEEQFQQKYFAEVPLSTIVAMVNRV
Sequences:
>Translated_779_residues MQWIITATEQPPEWFIQAVKKYVSASKGIYAAQLLWQRGVKEESQLAAFINFKNYQPASAFEFAQEMQLAVARLQQARNK GEKITIWGDFDADGITSTAVLWDGLGQFFQQHQQLNYYIPNRLKESHGLNESGIANLAKQGCTLIVTCDTGSTNIDEIIY AQKLGIDVIVTDHHTLPTERPPVTAIINPRYLPNEHQLFHLSGVGVAYKLIEALYKSLPDVPQNPLEDLLDLVAVGLIAD LVQLSGDCRYLAQLGIQRLQTDFQQPPAARRRPGVGRLLELCQRNGDRPTDISFGLGPRINAVSRIQGDASFCVELLTSR DINRCHQLAEVTELANTRRKSLQKDVQAQVTQKLTQLDLSTTSVIVLEDPQWPAGVLGLVAGQVAQETGRPTILLSTEGL GNEEDSSPSPIPNLQLLARGSARSVNSVDLYQLVKHQAHLLHRFGGHPFAAGLSLLAENIPLFTQAINQQLRQTLGSVNL TPAVQADIVVTVADLGKELFLELKLLEPCGMGNPVPKLLIQNCWFENAWHRNQQDWQGKKVQYIKAEFDIRDDSSKNPFP GIWWGHYKDELPIGRCDCIAELDYNTFKKRYEIRLIALRPNPNSELKTQHSTQILDWRNLPNPQYPVPNPQSLILEECPM NWDDLRAWWRRSLYNNQQLVLAWSKPNLQPPQEIWLTLVGIAKYLSRTNQLATRTQILEKLKISDRSLLLGIKALKYWGF TVTRQDRSLQFIWSSNSVVESNADAAIAEFLATISEEQFQQKYFAEVPLSTIVAMVNRV >Mature_779_residues MQWIITATEQPPEWFIQAVKKYVSASKGIYAAQLLWQRGVKEESQLAAFINFKNYQPASAFEFAQEMQLAVARLQQARNK GEKITIWGDFDADGITSTAVLWDGLGQFFQQHQQLNYYIPNRLKESHGLNESGIANLAKQGCTLIVTCDTGSTNIDEIIY AQKLGIDVIVTDHHTLPTERPPVTAIINPRYLPNEHQLFHLSGVGVAYKLIEALYKSLPDVPQNPLEDLLDLVAVGLIAD LVQLSGDCRYLAQLGIQRLQTDFQQPPAARRRPGVGRLLELCQRNGDRPTDISFGLGPRINAVSRIQGDASFCVELLTSR DINRCHQLAEVTELANTRRKSLQKDVQAQVTQKLTQLDLSTTSVIVLEDPQWPAGVLGLVAGQVAQETGRPTILLSTEGL GNEEDSSPSPIPNLQLLARGSARSVNSVDLYQLVKHQAHLLHRFGGHPFAAGLSLLAENIPLFTQAINQQLRQTLGSVNL TPAVQADIVVTVADLGKELFLELKLLEPCGMGNPVPKLLIQNCWFENAWHRNQQDWQGKKVQYIKAEFDIRDDSSKNPFP GIWWGHYKDELPIGRCDCIAELDYNTFKKRYEIRLIALRPNPNSELKTQHSTQILDWRNLPNPQYPVPNPQSLILEECPM NWDDLRAWWRRSLYNNQQLVLAWSKPNLQPPQEIWLTLVGIAKYLSRTNQLATRTQILEKLKISDRSLLLGIKALKYWGF TVTRQDRSLQFIWSSNSVVESNADAAIAEFLATISEEQFQQKYFAEVPLSTIVAMVNRV
Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]
COG id: COG0608
COG function: function code L; Single-stranded DNA-specific exonuclease
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 OB DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1789259, Length=515, Percent_Identity=30.873786407767, Blast_Score=195, Evalue=9e-51,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003156 - InterPro: IPR001667 - InterPro: IPR004610 - InterPro: IPR018779 [H]
Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]
EC number: 3.1.-.- [C]
Molecular weight: Translated: 87779; Mature: 87779
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQWIITATEQPPEWFIQAVKKYVSASKGIYAAQLLWQRGVKEESQLAAFINFKNYQPASA CCEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHEEEEEECCCCCCHHH FEFAQEMQLAVARLQQARNKGEKITIWGDFDADGITSTAVLWDGLGQFFQQHQQLNYYIP HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC NRLKESHGLNESGIANLAKQGCTLIVTCDTGSTNIDEIIYAQKLGIDVIVTDHHTLPTER HHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCCC PPVTAIINPRYLPNEHQLFHLSGVGVAYKLIEALYKSLPDVPQNPLEDLLDLVAVGLIAD CCEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH LVQLSGDCRYLAQLGIQRLQTDFQQPPAARRRPGVGRLLELCQRNGDRPTDISFGLGPRI HHHHCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC NAVSRIQGDASFCVELLTSRDINRCHQLAEVTELANTRRKSLQKDVQAQVTQKLTQLDLS CHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TTSVIVLEDPQWPAGVLGLVAGQVAQETGRPTILLSTEGLGNEEDSSPSPIPNLQLLARG CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECC SARSVNSVDLYQLVKHQAHLLHRFGGHPFAAGLSLLAENIPLFTQAINQQLRQTLGSVNL CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC TPAVQADIVVTVADLGKELFLELKLLEPCGMGNPVPKLLIQNCWFENAWHRNQQDWQGKK CCCCCCCEEEEHHHCCHHHHHHHHEECCCCCCCCHHHHHHHHHCCCCHHCCCCCCCCCCC VQYIKAEFDIRDDSSKNPFPGIWWGHYKDELPIGRCDCIAELDYNTFKKRYEIRLIALRP EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHEEECCHHHHHCEEEEEEEEECC NPNSELKTQHSTQILDWRNLPNPQYPVPNPQSLILEECPMNWDDLRAWWRRSLYNNQQLV CCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEE LAWSKPNLQPPQEIWLTLVGIAKYLSRTNQLATRTQILEKLKISDRSLLLGIKALKYWGF EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCE TVTRQDRSLQFIWSSNSVVESNADAAIAEFLATISEEQFQQKYFAEVPLSTIVAMVNRV EEEECCCCEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC >Mature Secondary Structure MQWIITATEQPPEWFIQAVKKYVSASKGIYAAQLLWQRGVKEESQLAAFINFKNYQPASA CCEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHEEEEEECCCCCCHHH FEFAQEMQLAVARLQQARNKGEKITIWGDFDADGITSTAVLWDGLGQFFQQHQQLNYYIP HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC NRLKESHGLNESGIANLAKQGCTLIVTCDTGSTNIDEIIYAQKLGIDVIVTDHHTLPTER HHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCCC PPVTAIINPRYLPNEHQLFHLSGVGVAYKLIEALYKSLPDVPQNPLEDLLDLVAVGLIAD CCEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH LVQLSGDCRYLAQLGIQRLQTDFQQPPAARRRPGVGRLLELCQRNGDRPTDISFGLGPRI HHHHCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC NAVSRIQGDASFCVELLTSRDINRCHQLAEVTELANTRRKSLQKDVQAQVTQKLTQLDLS CHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TTSVIVLEDPQWPAGVLGLVAGQVAQETGRPTILLSTEGLGNEEDSSPSPIPNLQLLARG CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECC SARSVNSVDLYQLVKHQAHLLHRFGGHPFAAGLSLLAENIPLFTQAINQQLRQTLGSVNL CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC TPAVQADIVVTVADLGKELFLELKLLEPCGMGNPVPKLLIQNCWFENAWHRNQQDWQGKK CCCCCCCEEEEHHHCCHHHHHHHHEECCCCCCCCHHHHHHHHHCCCCHHCCCCCCCCCCC VQYIKAEFDIRDDSSKNPFPGIWWGHYKDELPIGRCDCIAELDYNTFKKRYEIRLIALRP EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHEEECCHHHHHCEEEEEEEEECC NPNSELKTQHSTQILDWRNLPNPQYPVPNPQSLILEECPMNWDDLRAWWRRSLYNNQQLV CCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEE LAWSKPNLQPPQEIWLTLVGIAKYLSRTNQLATRTQILEKLKISDRSLLLGIKALKYWGF EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCE TVTRQDRSLQFIWSSNSVVESNADAAIAEFLATISEEQFQQKYFAEVPLSTIVAMVNRV EEEECCCCEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]