| Definition | Nostoc sp. PCC 7120, complete genome. |
|---|---|
| Accession | NC_003272 |
| Length | 6,413,771 |
Click here to switch to the map view.
The map label for this gene is 17229469
Identifier: 17229469
GI number: 17229469
Start: 2363478
End: 2364023
Strand: Direct
Name: 17229469
Synonym: alr1977
Alternate gene names: NA
Gene position: 2363478-2364023 (Clockwise)
Preceding gene: 17229468
Following gene: 17229470
Centisome position: 36.85
GC content: 40.48
Gene sequence:
>546_bases ATGTCATTAATTGAAAAACTGTCGACAGACTTTAGACAACGCTGTGAGGTAATCACTACTGAACAACGCAGCTTAATTCA ATTGAAAGCTTTTGAGCGATTGCCAGCAAACACCCTAGCCGCTAAATTAGGGGCAACAGTCTTGACACCTGATCAGTTTC CCAATTTACCAGCAGAGCAAGTACAAAGATTACTTGCCAGTGATGAGTGGTCAGGAGCAATTGTATGCGATCGCCCCCTA ATAATTGTTTATAATCCCCTTCACGCAGATACAAGATACGAATCAAATGTGATGCACGAAATAGCTCATGTATTGTTAAA TCATAAGCGGGTTGGTTTCGATCCATTAACAGGGCTACCAAAACGTCAACAAATTAACGAAGATGAAGCCACTTATTTAG GAGGATGCCTGCAAATTCCCAAACGTGGTTTACTATGGGCAACACAAAGAAAAATGCTCTTATCTGAGATTGCGGTATAT TTTGGTGCTAGTGAAGCTATGGTACAGTTTCGCAGTAATGTAACTAACGTACCTGTAAGATACTAA
Upstream 100 bases:
>100_bases AACTTGATCCAGCGATCGCCAATGCTTTAGCGTCCTTAGTCAAAGCAGCCTATCGAGACCTTTCGCAACAAGATGACGAA TTGAAGCAAGACCCATAACT
Downstream 100 bases:
>100_bases GGTTCTATCAAATACAAACTATTATCTGCTTGCCATTGTGATTGAGAGATGGCGTAGTAAGCTAGCTTTTGATACTTCAT GGCTATTTTCTCAATTACTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 181; Mature: 180
Protein sequence:
>181_residues MSLIEKLSTDFRQRCEVITTEQRSLIQLKAFERLPANTLAAKLGATVLTPDQFPNLPAEQVQRLLASDEWSGAIVCDRPL IIVYNPLHADTRYESNVMHEIAHVLLNHKRVGFDPLTGLPKRQQINEDEATYLGGCLQIPKRGLLWATQRKMLLSEIAVY FGASEAMVQFRSNVTNVPVRY
Sequences:
>Translated_181_residues MSLIEKLSTDFRQRCEVITTEQRSLIQLKAFERLPANTLAAKLGATVLTPDQFPNLPAEQVQRLLASDEWSGAIVCDRPL IIVYNPLHADTRYESNVMHEIAHVLLNHKRVGFDPLTGLPKRQQINEDEATYLGGCLQIPKRGLLWATQRKMLLSEIAVY FGASEAMVQFRSNVTNVPVRY >Mature_180_residues SLIEKLSTDFRQRCEVITTEQRSLIQLKAFERLPANTLAAKLGATVLTPDQFPNLPAEQVQRLLASDEWSGAIVCDRPLI IVYNPLHADTRYESNVMHEIAHVLLNHKRVGFDPLTGLPKRQQINEDEATYLGGCLQIPKRGLLWATQRKMLLSEIAVYF GASEAMVQFRSNVTNVPVRY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20490; Mature: 20359
Theoretical pI: Translated: 8.07; Mature: 8.07
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLIEKLSTDFRQRCEVITTEQRSLIQLKAFERLPANTLAAKLGATVLTPDQFPNLPAEQ CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHCCEEECCCCCCCCCHHH VQRLLASDEWSGAIVCDRPLIIVYNPLHADTRYESNVMHEIAHVLLNHKRVGFDPLTGLP HHHHHHCCCCCCEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC KRQQINEDEATYLGGCLQIPKRGLLWATQRKMLLSEIAVYFGASEAMVQFRSNVTNVPVR CHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC Y C >Mature Secondary Structure SLIEKLSTDFRQRCEVITTEQRSLIQLKAFERLPANTLAAKLGATVLTPDQFPNLPAEQ CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHCCEEECCCCCCCCCHHH VQRLLASDEWSGAIVCDRPLIIVYNPLHADTRYESNVMHEIAHVLLNHKRVGFDPLTGLP HHHHHHCCCCCCEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC KRQQINEDEATYLGGCLQIPKRGLLWATQRKMLLSEIAVYFGASEAMVQFRSNVTNVPVR CHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC Y C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA