Click here to switch to the map view.

The map label for this gene is yddE [C]

Identifier: 17229436

GI number: 17229436

Start: 2327191

End: 2328012

Strand: Reverse

Name: yddE [C]

Synonym: all1944

Alternate gene names: 17229436

Gene position: 2328012-2327191 (Counterclockwise)

Preceding gene: 17229439

Following gene: 17229435

Centisome position: 36.3

GC content: 47.57

Gene sequence:

>822_bases
ATGGGACAACAAATTATTCAAGTAGATGCTTTCACCGCTAAACCATTCGCGGGTAATCCTGCGGCTGTCTGTGTTTTGCC
TACTCCCCAAGATGACTCTTGGATGCAAAATGTAGCCCAGGAAATGAATTTATCGGAGACGGCTTTCTTAGTCAAACAAG
ATGATGGCTTCAATCTGCGGTGGTTCACGCCGACAGTGGAAGTACCGCTTTGTGGTCATGCAACCTTAGCCAGCGCTCAT
GTTTTGTGGTCAGAGGGGCATTTGTCCCCCGATGAAGTTGCTCATTTTCATACCAAAAGTGGTTTACTCATTGCCAAGCG
CCAAGGTGATTGGATTGAGTTAGATTTTCCGGTAAATCATTCACAAGCAATAACAACGCCGCCTGAACTAGGTGAGGCTT
TGGGTGTGCCATTGAAAGTAGTTGTACAGAACTCTTTGGGCTATTTGGTAGAGGTAGAGTCTGAGGATTTAGTGCGGCAA
ATGCAGCCGAATTTCTCTAAACTGGCAACCTTACTAACTGGTAATGCTATTGTAACCAGCCAAACTCGGACTGATTCCCA
GTATGATTTTGTTTCTCGTTTTTTTGCTCCTGGTTTGGGTATAAATGAAGATCCAGTTACAGGGGCGGCTCATTGCTGCT
TGGCTGCTTATTGGCGCGATCGCCTGGGTAAAGATGAGTTTGTGGCTTATCAAGCCTCTAGCCGTGGTGGGGTGGTGAAG
GTGCGTTATGGGGGAGGCGATGCCTACGGCGGTTCGCAAAGCGACCATCGGGTATTTCTCGCAGGACAGGCGGTTACAGT
TTTACGGGGGGAGTTAATTTAA

Upstream 100 bases:

>100_bases
CTTGTGGAGATAGTTTACTAATTTCTAAGGTACTGCATAGCCCGTTATTCATGCTCAATAGGACTTACCTTGTTAATTAC
GAATTATATTTTTAAACTTT

Downstream 100 bases:

>100_bases
TGCAAAGGGGCGCAGAGGTACGCAAAGAGAAGTCTCCGCGTTCCTTTGCGTTTACCTCCGTGTTCCTCTGCGTTTGAAAA
TTAAGCGCCAGAATAGATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MGQQIIQVDAFTAKPFAGNPAAVCVLPTPQDDSWMQNVAQEMNLSETAFLVKQDDGFNLRWFTPTVEVPLCGHATLASAH
VLWSEGHLSPDEVAHFHTKSGLLIAKRQGDWIELDFPVNHSQAITTPPELGEALGVPLKVVVQNSLGYLVEVESEDLVRQ
MQPNFSKLATLLTGNAIVTSQTRTDSQYDFVSRFFAPGLGINEDPVTGAAHCCLAAYWRDRLGKDEFVAYQASSRGGVVK
VRYGGGDAYGGSQSDHRVFLAGQAVTVLRGELI

Sequences:

>Translated_273_residues
MGQQIIQVDAFTAKPFAGNPAAVCVLPTPQDDSWMQNVAQEMNLSETAFLVKQDDGFNLRWFTPTVEVPLCGHATLASAH
VLWSEGHLSPDEVAHFHTKSGLLIAKRQGDWIELDFPVNHSQAITTPPELGEALGVPLKVVVQNSLGYLVEVESEDLVRQ
MQPNFSKLATLLTGNAIVTSQTRTDSQYDFVSRFFAPGLGINEDPVTGAAHCCLAAYWRDRLGKDEFVAYQASSRGGVVK
VRYGGGDAYGGSQSDHRVFLAGQAVTVLRGELI
>Mature_272_residues
GQQIIQVDAFTAKPFAGNPAAVCVLPTPQDDSWMQNVAQEMNLSETAFLVKQDDGFNLRWFTPTVEVPLCGHATLASAHV
LWSEGHLSPDEVAHFHTKSGLLIAKRQGDWIELDFPVNHSQAITTPPELGEALGVPLKVVVQNSLGYLVEVESEDLVRQM
QPNFSKLATLLTGNAIVTSQTRTDSQYDFVSRFFAPGLGINEDPVTGAAHCCLAAYWRDRLGKDEFVAYQASSRGGVVKV
RYGGGDAYGGSQSDHRVFLAGQAVTVLRGELI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=301, Percent_Identity=39.202657807309, Blast_Score=168, Evalue=5e-42,
Organism=Homo sapiens, GI74316009, Length=255, Percent_Identity=40.3921568627451, Blast_Score=151, Evalue=6e-37,
Organism=Escherichia coli, GI1787737, Length=236, Percent_Identity=30.9322033898305, Blast_Score=97, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17542160, Length=316, Percent_Identity=37.3417721518987, Blast_Score=172, Evalue=2e-43,
Organism=Caenorhabditis elegans, GI17542154, Length=316, Percent_Identity=37.3417721518987, Blast_Score=172, Evalue=2e-43,
Organism=Caenorhabditis elegans, GI17542158, Length=315, Percent_Identity=36.8253968253968, Blast_Score=157, Evalue=4e-39,
Organism=Caenorhabditis elegans, GI17542152, Length=315, Percent_Identity=36.8253968253968, Blast_Score=157, Evalue=4e-39,
Organism=Saccharomyces cerevisiae, GI6321818, Length=286, Percent_Identity=28.3216783216783, Blast_Score=83, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29673; Mature: 29542

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQQIIQVDAFTAKPFAGNPAAVCVLPTPQDDSWMQNVAQEMNLSETAFLVKQDDGFNLR
CCCEEEEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEE
WFTPTVEVPLCGHATLASAHVLWSEGHLSPDEVAHFHTKSGLLIAKRQGDWIELDFPVNH
EECCEEEEECCCCHHHHEEEEEEECCCCCHHHHHEEECCCCEEEEECCCCEEEEECCCCC
SQAITTPPELGEALGVPLKVVVQNSLGYLVEVESEDLVRQMQPNFSKLATLLTGNAIVTS
CCEECCCHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHCCCHHHHHHHHCCCEEEEE
QTRTDSQYDFVSRFFAPGLGINEDPVTGAAHCCLAAYWRDRLGKDEFVAYQASSRGGVVK
CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEE
VRYGGGDAYGGSQSDHRVFLAGQAVTVLRGELI
EEECCCCCCCCCCCCCEEEEECCEEEEEECCCC
>Mature Secondary Structure 
GQQIIQVDAFTAKPFAGNPAAVCVLPTPQDDSWMQNVAQEMNLSETAFLVKQDDGFNLR
CCEEEEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEE
WFTPTVEVPLCGHATLASAHVLWSEGHLSPDEVAHFHTKSGLLIAKRQGDWIELDFPVNH
EECCEEEEECCCCHHHHEEEEEEECCCCCHHHHHEEECCCCEEEEECCCCEEEEECCCCC
SQAITTPPELGEALGVPLKVVVQNSLGYLVEVESEDLVRQMQPNFSKLATLLTGNAIVTS
CCEECCCHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHCCCHHHHHHHHCCCEEEEE
QTRTDSQYDFVSRFFAPGLGINEDPVTGAAHCCLAAYWRDRLGKDEFVAYQASSRGGVVK
CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEE
VRYGGGDAYGGSQSDHRVFLAGQAVTVLRGELI
EEECCCCCCCCCCCCCEEEEECCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]