Click here to switch to the map view.

The map label for this gene is ugpB [C]

Identifier: 17229408

GI number: 17229408

Start: 2298095

End: 2299351

Strand: Reverse

Name: ugpB [C]

Synonym: all1916

Alternate gene names: 17229408

Gene position: 2299351-2298095 (Counterclockwise)

Preceding gene: 17229411

Following gene: 17229406

Centisome position: 35.85

GC content: 42.16

Gene sequence:

>1257_bases
ATGAAAAAAAGTTGGTGGCAATTTTTGGGATTAGTGATGGCGATCGCGATCGCCATTGTTGCTTACCATAGTTGGCAAGT
GCAAAGTTCGTCTTCAGCATCTGCCCCAGTCACTGTTAAACTCAGTGGCTGGGGTGGTTCTCCAGTGGAGCAAAAACTAT
TGAAACAGGTTTTGCAAGACTTTGAAGCACAGCATCCACACATCAAGGTCAAATATGAGGTGATTTCTGACCAATATATG
GATGTGATCAAAACCCGCTTGATTGGAGAAGCTGCGCCTGATGTCTTCTACTTGGATGCCCTGGAGGCTCCTTTTTTGAT
GAGCCAGAATGTGCTGGAACCACTGGATAATTACATCACTCCTGAATTTGACTTAAGTGACTTTGAAGCTAATCTCCTAG
ATAACTTTAAATATCAGAACCATATCTACGGTTTTCCTAAGGATTATTCTACCTTGGCGCTGTTTTATAACAAAAAAGCC
TTTGCTGCTGCTGGTTTGAGCAGTCCCCCAGCGACGTGGACAGAATTACGCACCTACTCCCAGCAATTAACAGGTAAACT
CAACAAGTATGGCTTTGGGGAAGCACCGGAATTAGCCCGTCAAGTTTACAAAATTAAAGCTTTTGGTGGAGAAGTTATCA
ATCAGAATGGTTATGCTACCTTTGCCAGTGAAGCTGGTTTAAGGGGATTTCAATTAGTGATAGACCAGTATCAAAAAGAT
AAATCATCTGCTCAAAAATCTGACGTAGGGACAAACTCAGGTAGTGAGATGTTCGGTCAGGAGAAAGTGGCAATGGTAAT
TGAAGGTAATTGGGCGATTCCATATTTACAAGAAACCTTTCCGCAATTGGAGTTTGCAACTGCACAATTACCAACGATTA
ATAACAAGAAAGGCACAATGGTATTTACTGTTGCTTATGTGATGAGTAAGCAATCACAGCATAAAGCCGAAGCGTGGGAA
TTAATTTCCTATCTCACAGGTAAAGCCGGAATGCAGAAATGGACAAGTACAGGCTTTGCTTTACCTACACGCAAATCAGT
ATCTCAAAAATTTGGATATGAGCAAGACCCATTGCGATCGCCTTTAGTTGCCGGTGTTGATGATGCTACACCCTGGCAGG
TTGGTAAATACCCAGCGCCAATTGTGAATAATTTTGATAATCAATTTGTCAGTGCCTTACTGGGACAACAACCCTTAAAA
CAGGCGATGCTAAGGGCGCAGAATCAAGCAAATAAGCAAATTAGAGCAATGGAGTGA

Upstream 100 bases:

>100_bases
TAGTATAGCGGTAGATACCTGTAATTTTTTAGTCAATAGTCATTAGTCAGTAGTTATCTTTCCCAGATCCCTGCTTCTTC
CCTATCCTCTATCTCTGGCG

Downstream 100 bases:

>100_bases
AGCTAGCCAGGGGGAAGAACTAAATTGCTATGTACAAAAGTTGCACAGCAACGTCTCTATTAAATACTTGGTAGCGATCG
CCACCAAATAAAATCCTGTC

Product: sugar transport system, sugar-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MKKSWWQFLGLVMAIAIAIVAYHSWQVQSSSSASAPVTVKLSGWGGSPVEQKLLKQVLQDFEAQHPHIKVKYEVISDQYM
DVIKTRLIGEAAPDVFYLDALEAPFLMSQNVLEPLDNYITPEFDLSDFEANLLDNFKYQNHIYGFPKDYSTLALFYNKKA
FAAAGLSSPPATWTELRTYSQQLTGKLNKYGFGEAPELARQVYKIKAFGGEVINQNGYATFASEAGLRGFQLVIDQYQKD
KSSAQKSDVGTNSGSEMFGQEKVAMVIEGNWAIPYLQETFPQLEFATAQLPTINNKKGTMVFTVAYVMSKQSQHKAEAWE
LISYLTGKAGMQKWTSTGFALPTRKSVSQKFGYEQDPLRSPLVAGVDDATPWQVGKYPAPIVNNFDNQFVSALLGQQPLK
QAMLRAQNQANKQIRAME

Sequences:

>Translated_418_residues
MKKSWWQFLGLVMAIAIAIVAYHSWQVQSSSSASAPVTVKLSGWGGSPVEQKLLKQVLQDFEAQHPHIKVKYEVISDQYM
DVIKTRLIGEAAPDVFYLDALEAPFLMSQNVLEPLDNYITPEFDLSDFEANLLDNFKYQNHIYGFPKDYSTLALFYNKKA
FAAAGLSSPPATWTELRTYSQQLTGKLNKYGFGEAPELARQVYKIKAFGGEVINQNGYATFASEAGLRGFQLVIDQYQKD
KSSAQKSDVGTNSGSEMFGQEKVAMVIEGNWAIPYLQETFPQLEFATAQLPTINNKKGTMVFTVAYVMSKQSQHKAEAWE
LISYLTGKAGMQKWTSTGFALPTRKSVSQKFGYEQDPLRSPLVAGVDDATPWQVGKYPAPIVNNFDNQFVSALLGQQPLK
QAMLRAQNQANKQIRAME
>Mature_418_residues
MKKSWWQFLGLVMAIAIAIVAYHSWQVQSSSSASAPVTVKLSGWGGSPVEQKLLKQVLQDFEAQHPHIKVKYEVISDQYM
DVIKTRLIGEAAPDVFYLDALEAPFLMSQNVLEPLDNYITPEFDLSDFEANLLDNFKYQNHIYGFPKDYSTLALFYNKKA
FAAAGLSSPPATWTELRTYSQQLTGKLNKYGFGEAPELARQVYKIKAFGGEVINQNGYATFASEAGLRGFQLVIDQYQKD
KSSAQKSDVGTNSGSEMFGQEKVAMVIEGNWAIPYLQETFPQLEFATAQLPTINNKKGTMVFTVAYVMSKQSQHKAEAWE
LISYLTGKAGMQKWTSTGFALPTRKSVSQKFGYEQDPLRSPLVAGVDDATPWQVGKYPAPIVNNFDNQFVSALLGQQPLK
QAMLRAQNQANKQIRAME

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 46707; Mature: 46707

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSWWQFLGLVMAIAIAIVAYHSWQVQSSSSASAPVTVKLSGWGGSPVEQKLLKQVLQD
CCCHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
FEAQHPHIKVKYEVISDQYMDVIKTRLIGEAAPDVFYLDALEAPFLMSQNVLEPLDNYIT
HHCCCCEEEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCHHHHHHHHHHHHHHCC
PEFDLSDFEANLLDNFKYQNHIYGFPKDYSTLALFYNKKAFAAAGLSSPPATWTELRTYS
CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHCCCCCCCCHHHHHHHHH
QQLTGKLNKYGFGEAPELARQVYKIKAFGGEVINQNGYATFASEAGLRGFQLVIDQYQKD
HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHCCCCCCEEEHHHCCCCHHHHHHHHHHHH
KSSAQKSDVGTNSGSEMFGQEKVAMVIEGNWAIPYLQETFPQLEFATAQLPTINNKKGTM
HHHHHHHCCCCCCCHHHHCCCEEEEEEECCCCCCHHHHHCCCHHHHHCCCCCCCCCCCCE
VFTVAYVMSKQSQHKAEAWELISYLTGKAGMQKWTSTGFALPTRKSVSQKFGYEQDPLRS
EEEHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCC
PLVAGVDDATPWQVGKYPAPIVNNFDNQFVSALLGQQPLKQAMLRAQNQANKQIRAME
CCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHCCCC
>Mature Secondary Structure
MKKSWWQFLGLVMAIAIAIVAYHSWQVQSSSSASAPVTVKLSGWGGSPVEQKLLKQVLQD
CCCHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHH
FEAQHPHIKVKYEVISDQYMDVIKTRLIGEAAPDVFYLDALEAPFLMSQNVLEPLDNYIT
HHCCCCEEEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCHHHHHHHHHHHHHHCC
PEFDLSDFEANLLDNFKYQNHIYGFPKDYSTLALFYNKKAFAAAGLSSPPATWTELRTYS
CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHCCCCCCCCHHHHHHHHH
QQLTGKLNKYGFGEAPELARQVYKIKAFGGEVINQNGYATFASEAGLRGFQLVIDQYQKD
HHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHCCCCCCEEEHHHCCCCHHHHHHHHHHHH
KSSAQKSDVGTNSGSEMFGQEKVAMVIEGNWAIPYLQETFPQLEFATAQLPTINNKKGTM
HHHHHHHCCCCCCCHHHHCCCEEEEEEECCCCCCHHHHHCCCHHHHHCCCCCCCCCCCCE
VFTVAYVMSKQSQHKAEAWELISYLTGKAGMQKWTSTGFALPTRKSVSQKFGYEQDPLRS
EEEHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCC
PLVAGVDDATPWQVGKYPAPIVNNFDNQFVSALLGQQPLKQAMLRAQNQANKQIRAME
CCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA