Click here to switch to the map view.

The map label for this gene is ctpA [H]

Identifier: 17229230

GI number: 17229230

Start: 2089262

End: 2090599

Strand: Reverse

Name: ctpA [H]

Synonym: all1738

Alternate gene names: 17229230

Gene position: 2090599-2089262 (Counterclockwise)

Preceding gene: 17229231

Following gene: 17229229

Centisome position: 32.6

GC content: 45.37

Gene sequence:

>1338_bases
ATGAACTCATCTGCGAAACATCACTCGCTGCTCCAGGTTGCTATGATTGGAGGAGCGATCGCTACAACAGCAACTGTATC
TGTATTTGGCCCGGCTTGGACTCGTAGCGTTCGTGCCGCTTTACAAGACAGCCCCAAAGCGGTAGTAGACCAAGTATGGC
AATTAGTAAATAACGAATATGTTGACGGCAAGTTTAATCAACAAGATTGGCTGGCAGTTAGAAAAAGTTTATTAAGCAAA
GATTATTCATCTAAAGAAGAAGCTTACGTGGCGATTCGGGAAGCCCTGCAAAGGCTCAACGATCCATATACAAGGTTTAT
GGACCCCAAGCAGTTTGAAGTCCTTACCAGTCAAACATCTGGGGAAGTATCTGGTATAGGTATCCGCATGGAGTTGAACG
AAACAACCAAGCGGCTGACTGTTTTAGAAGCCATAGAAAACTCTCCAGCCTTGAAAGCTGGGATTAAAGCAGGTGATGAA
ATCCTAGCAATTGACGGCAAACCCACTCAGCAAATGAAAGTGGATGATGCCTCTAAATTAATTCGCGGTAAAGAAGGTAC
AGCCATTACTTTACGTCTAGGACGTACTGGCCGCAACACTTTTGATTTGAAGCTCACAAGGGCCAAAATAGAAGTACCAA
CCGTTGTGTACAACCTCAAGCAAGAAGGTAGCAGACGGGTTGGTTACATCCGCTTACGGGAGTTTAGCGCCCATGCCGCC
GAGCAAATGGCACGAGCTATCCGCAATTTGAACGGTCAAAAAGTAGATTCTTATGTATTAGATTTACGGGGAAACCCTGG
TGGTTTATTACAAGCCAGTATTGAAATTGCTCGGATGTGGTTAGATGATGGTGGCATTGTCCGCACCGTTAACCGTCAGG
GATTTAACGAAGATACAAAAGCTAACCGGACTGCCTTAACAAAACTCCCCTTGGCAGTATTGGTAGATGGTAACTCAGCT
AGCGCCAGTGAGATTCTGACTGGTGCGCTCAAGGATAATAAACGAGCTGTAGTAATTGGTGGTCAAACCTTCGGCAAAGC
TTTAGTCCAGTCAGTTCATGAACTACCTGATGGTTCAGGTTTGGCAGTGACGATCGCTCACTACTATACCCCCAACGGCA
CAGACATCAACCATAAAGGTATTACACCAGACATCAAACTAGAGTTAACCGACGCACAGGAACGCCAATTAGCCACCAAC
CCCAAACTAATTGGAACTCAAAACGATCCGCAATATGCCCGTGCGATCGCTGTATTATCTAGCAATACCTTTGCTCGTCC
TCCCCTCAATCAAAACAATCAACCAATGAGTCTAGGTGCCAATGAGTTGAAGTTTTAA

Upstream 100 bases:

>100_bases
TGAGGGGAGTGTAGCTGAAAATTGAGTATAAAAACTTAAAACTTTACCGAAAGTCTGATTGCTAAACTGTCAAAATCACA
ATAAATCCCTGCTGATATAC

Downstream 100 bases:

>100_bases
AAATCTGTTCTATGAGTGATTAGTTACCAGGTGTTCATATATCAGCATTTTTTTGCTCCATAATTCTGGAGCCATAACCA
GAACCTGAGTGGTGCGGGAA

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 445; Mature: 445

Protein sequence:

>445_residues
MNSSAKHHSLLQVAMIGGAIATTATVSVFGPAWTRSVRAALQDSPKAVVDQVWQLVNNEYVDGKFNQQDWLAVRKSLLSK
DYSSKEEAYVAIREALQRLNDPYTRFMDPKQFEVLTSQTSGEVSGIGIRMELNETTKRLTVLEAIENSPALKAGIKAGDE
ILAIDGKPTQQMKVDDASKLIRGKEGTAITLRLGRTGRNTFDLKLTRAKIEVPTVVYNLKQEGSRRVGYIRLREFSAHAA
EQMARAIRNLNGQKVDSYVLDLRGNPGGLLQASIEIARMWLDDGGIVRTVNRQGFNEDTKANRTALTKLPLAVLVDGNSA
SASEILTGALKDNKRAVVIGGQTFGKALVQSVHELPDGSGLAVTIAHYYTPNGTDINHKGITPDIKLELTDAQERQLATN
PKLIGTQNDPQYARAIAVLSSNTFARPPLNQNNQPMSLGANELKF

Sequences:

>Translated_445_residues
MNSSAKHHSLLQVAMIGGAIATTATVSVFGPAWTRSVRAALQDSPKAVVDQVWQLVNNEYVDGKFNQQDWLAVRKSLLSK
DYSSKEEAYVAIREALQRLNDPYTRFMDPKQFEVLTSQTSGEVSGIGIRMELNETTKRLTVLEAIENSPALKAGIKAGDE
ILAIDGKPTQQMKVDDASKLIRGKEGTAITLRLGRTGRNTFDLKLTRAKIEVPTVVYNLKQEGSRRVGYIRLREFSAHAA
EQMARAIRNLNGQKVDSYVLDLRGNPGGLLQASIEIARMWLDDGGIVRTVNRQGFNEDTKANRTALTKLPLAVLVDGNSA
SASEILTGALKDNKRAVVIGGQTFGKALVQSVHELPDGSGLAVTIAHYYTPNGTDINHKGITPDIKLELTDAQERQLATN
PKLIGTQNDPQYARAIAVLSSNTFARPPLNQNNQPMSLGANELKF
>Mature_445_residues
MNSSAKHHSLLQVAMIGGAIATTATVSVFGPAWTRSVRAALQDSPKAVVDQVWQLVNNEYVDGKFNQQDWLAVRKSLLSK
DYSSKEEAYVAIREALQRLNDPYTRFMDPKQFEVLTSQTSGEVSGIGIRMELNETTKRLTVLEAIENSPALKAGIKAGDE
ILAIDGKPTQQMKVDDASKLIRGKEGTAITLRLGRTGRNTFDLKLTRAKIEVPTVVYNLKQEGSRRVGYIRLREFSAHAA
EQMARAIRNLNGQKVDSYVLDLRGNPGGLLQASIEIARMWLDDGGIVRTVNRQGFNEDTKANRTALTKLPLAVLVDGNSA
SASEILTGALKDNKRAVVIGGQTFGKALVQSVHELPDGSGLAVTIAHYYTPNGTDINHKGITPDIKLELTDAQERQLATN
PKLIGTQNDPQYARAIAVLSSNTFARPPLNQNNQPMSLGANELKF

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=327, Percent_Identity=29.9694189602446, Blast_Score=135, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 48616; Mature: 48616

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSSAKHHSLLQVAMIGGAIATTATVSVFGPAWTRSVRAALQDSPKAVVDQVWQLVNNEY
CCCCCHHHHHHHHHHHCCHHHHHEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
VDGKFNQQDWLAVRKSLLSKDYSSKEEAYVAIREALQRLNDPYTRFMDPKQFEVLTSQTS
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCHHEEEECCCC
GEVSGIGIRMELNETTKRLTVLEAIENSPALKAGIKAGDEILAIDGKPTQQMKVDDASKL
CCEEEEEEEEEECHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEECCCCCCCEECCCHHHH
IRGKEGTAITLRLGRTGRNTFDLKLTRAKIEVPTVVYNLKQEGSRRVGYIRLREFSAHAA
HCCCCCCEEEEEECCCCCCEEEEEEEEEEEECCCEEEECHHCCCCCEEEEEEEHHHHHHH
EQMARAIRNLNGQKVDSYVLDLRGNPGGLLQASIEIARMWLDDGGIVRTVNRQGFNEDTK
HHHHHHHHCCCCCEEEEEEEEECCCCCCEEHHHEEEEEEEECCCCEEEEECCCCCCCCCC
ANRTALTKLPLAVLVDGNSASASEILTGALKDNKRAVVIGGQTFGKALVQSVHELPDGSG
CCCHHHEECCEEEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCC
LAVTIAHYYTPNGTDINHKGITPDIKLELTDAQERQLATNPKLIGTQNDPQYARAIAVLS
EEEEEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCEEECCCCHHHHHEEHEEE
SNTFARPPLNQNNQPMSLGANELKF
CCCCCCCCCCCCCCCCCCCCHHCCC
>Mature Secondary Structure
MNSSAKHHSLLQVAMIGGAIATTATVSVFGPAWTRSVRAALQDSPKAVVDQVWQLVNNEY
CCCCCHHHHHHHHHHHCCHHHHHEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
VDGKFNQQDWLAVRKSLLSKDYSSKEEAYVAIREALQRLNDPYTRFMDPKQFEVLTSQTS
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCHHEEEECCCC
GEVSGIGIRMELNETTKRLTVLEAIENSPALKAGIKAGDEILAIDGKPTQQMKVDDASKL
CCEEEEEEEEEECHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEECCCCCCCEECCCHHHH
IRGKEGTAITLRLGRTGRNTFDLKLTRAKIEVPTVVYNLKQEGSRRVGYIRLREFSAHAA
HCCCCCCEEEEEECCCCCCEEEEEEEEEEEECCCEEEECHHCCCCCEEEEEEEHHHHHHH
EQMARAIRNLNGQKVDSYVLDLRGNPGGLLQASIEIARMWLDDGGIVRTVNRQGFNEDTK
HHHHHHHHCCCCCEEEEEEEEECCCCCCEEHHHEEEEEEEECCCCEEEEECCCCCCCCCC
ANRTALTKLPLAVLVDGNSASASEILTGALKDNKRAVVIGGQTFGKALVQSVHELPDGSG
CCCHHHEECCEEEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCC
LAVTIAHYYTPNGTDINHKGITPDIKLELTDAQERQLATNPKLIGTQNDPQYARAIAVLS
EEEEEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHCCCCCEEECCCCHHHHHEEHEEE
SNTFARPPLNQNNQPMSLGANELKF
CCCCCCCCCCCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1421151 [H]