Click here to switch to the map view.

The map label for this gene is ndhM

Identifier: 17229224

GI number: 17229224

Start: 2085135

End: 2085491

Strand: Reverse

Name: ndhM

Synonym: all1732

Alternate gene names: 17229224

Gene position: 2085491-2085135 (Counterclockwise)

Preceding gene: 17229227

Following gene: 17229223

Centisome position: 32.52

GC content: 47.9

Gene sequence:

>357_bases
ATGGAAAACGCAACGCTGCTCAAGTCTACAACCCGACACATCCGCATTTTTGCAGCAGAAATTGACCGGGATGGCGAACT
AGTCCCCAGCAATCAGGTCTTGACCTTGGATATCGACCCGGACAACGAGTTCAACTGGAATGAAGATGCTTTGCAAAAGA
TTTATCGTAAGTTCGATGAATTAGTCGAAGCCTCAAGCGGTGCAGACCTGACAGACTACAACTTACGCCGCATTGGGTCA
GACTTAGAACATTATCTGCGATCGCTCCTCCAAAAAGGCGAAATCAGCTACAATCTCTCTGCTCGCGTCACTAACTACAG
CTTAGGGCTTCCTCAAGTGGCCGTTGAGGATAAATAG

Upstream 100 bases:

>100_bases
ACTACTAGCCTCCAGCACCCATTTAATTTGAGTGCTTTGCAGCCCATATATAGCGTCTACAATTATTTCAGTGTAATTAA
CCTGAATCTGACACCCTGCT

Downstream 100 bases:

>100_bases
TACGCGATATCCCCAGAACCCCGACTTCTTGAAGAAGTAGAAGTCGGGGTTCTGACTTATTTTAATAAATGTGTTAATTT
GAACAGCACTAAATCAATTA

Product: hypothetical protein

Products: NAD+; ubiquinol

Alternate protein names: NAD(P)H dehydrogenase I subunit M; NDH-1 subunit M; NDH-M

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MENATLLKSTTRHIRIFAAEIDRDGELVPSNQVLTLDIDPDNEFNWNEDALQKIYRKFDELVEASSGADLTDYNLRRIGS
DLEHYLRSLLQKGEISYNLSARVTNYSLGLPQVAVEDK

Sequences:

>Translated_118_residues
MENATLLKSTTRHIRIFAAEIDRDGELVPSNQVLTLDIDPDNEFNWNEDALQKIYRKFDELVEASSGADLTDYNLRRIGS
DLEHYLRSLLQKGEISYNLSARVTNYSLGLPQVAVEDK
>Mature_118_residues
MENATLLKSTTRHIRIFAAEIDRDGELVPSNQVLTLDIDPDNEFNWNEDALQKIYRKFDELVEASSGADLTDYNLRRIGS
DLEHYLRSLLQKGEISYNLSARVTNYSLGLPQVAVEDK

Specific function: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I ndhM subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NDHM_ANAVT (Q3MGF7)

Other databases:

- EMBL:   CP000117
- RefSeq:   YP_320824.1
- STRING:   Q3MGF7
- GeneID:   3682892
- GenomeReviews:   CP000117_GR
- KEGG:   ava:Ava_0303
- eggNOG:   NOG08035
- HOGENOM:   HBG286965
- OMA:   NYSMGLP
- ProtClustDB:   CLSK893267
- BioCyc:   AVAR240292:AVA_0303-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_01352
- InterPro:   IPR018922

Pfam domain/function: PF10664 DUF2485

EC number: 1.6.5.3

Molecular weight: Translated: 13473; Mature: 13473

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENATLLKSTTRHIRIFAAEIDRDGELVPSNQVLTLDIDPDNEFNWNEDALQKIYRKFDE
CCCCHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH
LVEASSGADLTDYNLRRIGSDLEHYLRSLLQKGEISYNLSARVTNYSLGLPQVAVEDK
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCEEECCC
>Mature Secondary Structure
MENATLLKSTTRHIRIFAAEIDRDGELVPSNQVLTLDIDPDNEFNWNEDALQKIYRKFDE
CCCCHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHH
LVEASSGADLTDYNLRRIGSDLEHYLRSLLQKGEISYNLSARVTNYSLGLPQVAVEDK
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA