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The map label for this gene is 17229104

Identifier: 17229104

GI number: 17229104

Start: 1893438

End: 1894235

Strand: Direct

Name: 17229104

Synonym: alr1612

Alternate gene names: NA

Gene position: 1893438-1894235 (Clockwise)

Preceding gene: 17229103

Following gene: 17229105

Centisome position: 29.52

GC content: 44.11

Gene sequence:

>798_bases
ATGTTTTCATTTATTAGCTCTGCCAATCCTTGGTTAGTAGGACTAGGACTAAATACTATTTTATTGAGTTTAGTCTGGTT
CGCCCCTAAAAAACTGCTCACCCCAGCAGGTGTGTTTCATGCTTGGTTATTGGGCATATTGATTTGGGGTACTTTAGGCT
GGCAAGGATATTTAGTAGTTACCTTTTATTTTCTTGTAGGTTCTGGTGTCACACGTATCGGGATGGCACAAAAAGAAGCT
CTTGGTATTGCCGAAAAGCGTTCGGGCGCAAGAGGCCCGGAAAATGTGTGGGGTTCTGCTTTAACTGCGGCGCTGTGTGC
TGTAGGCATAGGAATTATAAATGCTGGTCTTTTTTCACCCAGTCCCCAATCCCTAGTCCCCAGTCCCCAGTCCCTCTTGT
TACTCGGTTACGTCGCCAGTTTTAGTACGAAACTTTCTGATACCTGCGCTAGTGAAGTGGGTAAAGCTTACGGCAAAAGT
ACTTTCTTAATTACGACTTTGCAACCAGTTCCTAGAGGTACAGAGGGGGCTGTGAGTTTAGAGGGGACTTTAGCTGGTGT
GGTGGGTTCTGTGGCGATCGCTATTATAGGTTGGGGAGTCGGTTTAATTTCTCCCTTGGGAATTGTTTGGTGTGTGTTGG
CTGCTTTGATTGCCACAAATTTAGAAAGTGTAATTGGTGCAACATTGCAATCGAAATACACATGGTTAACTAATGAAATT
GTTAATATTCTTAACACCTTAATTGGGGCGATCGCTGCCATGTTAGTTGCCTTTGTTTGGGCAAGCTCTTTTGGTTAG

Upstream 100 bases:

>100_bases
TATGCGCTGTTTGGATGGAAGTAAAGGAAATTAACCACAGAAGTCCTAAAATTCGTTATTCTTTTGATATCCTGGCGAAA
CTACTCGTGGTTTTTTGCTG

Downstream 100 bases:

>100_bases
GGTAATAGTTTTATGTACTGGAGACTAAAAAATTATTTTTAGACCAAAGACTTAGGACTCACTACTTAATATTACTGAAA
ATATGCTTAAATTCTTTCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MFSFISSANPWLVGLGLNTILLSLVWFAPKKLLTPAGVFHAWLLGILIWGTLGWQGYLVVTFYFLVGSGVTRIGMAQKEA
LGIAEKRSGARGPENVWGSALTAALCAVGIGIINAGLFSPSPQSLVPSPQSLLLLGYVASFSTKLSDTCASEVGKAYGKS
TFLITTLQPVPRGTEGAVSLEGTLAGVVGSVAIAIIGWGVGLISPLGIVWCVLAALIATNLESVIGATLQSKYTWLTNEI
VNILNTLIGAIAAMLVAFVWASSFG

Sequences:

>Translated_265_residues
MFSFISSANPWLVGLGLNTILLSLVWFAPKKLLTPAGVFHAWLLGILIWGTLGWQGYLVVTFYFLVGSGVTRIGMAQKEA
LGIAEKRSGARGPENVWGSALTAALCAVGIGIINAGLFSPSPQSLVPSPQSLLLLGYVASFSTKLSDTCASEVGKAYGKS
TFLITTLQPVPRGTEGAVSLEGTLAGVVGSVAIAIIGWGVGLISPLGIVWCVLAALIATNLESVIGATLQSKYTWLTNEI
VNILNTLIGAIAAMLVAFVWASSFG
>Mature_265_residues
MFSFISSANPWLVGLGLNTILLSLVWFAPKKLLTPAGVFHAWLLGILIWGTLGWQGYLVVTFYFLVGSGVTRIGMAQKEA
LGIAEKRSGARGPENVWGSALTAALCAVGIGIINAGLFSPSPQSLVPSPQSLLLLGYVASFSTKLSDTCASEVGKAYGKS
TFLITTLQPVPRGTEGAVSLEGTLAGVVGSVAIAIIGWGVGLISPLGIVWCVLAALIATNLESVIGATLQSKYTWLTNEI
VNILNTLIGAIAAMLVAFVWASSFG

Specific function: Unknown

COG id: COG1836

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TMEM19 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002794 [H]

Pfam domain/function: PF01940 DUF92 [H]

EC number: NA

Molecular weight: Translated: 27556; Mature: 27556

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSFISSANPWLVGLGLNTILLSLVWFAPKKLLTPAGVFHAWLLGILIWGTLGWQGYLVV
CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHH
TFYFLVGSGVTRIGMAQKEALGIAEKRSGARGPENVWGSALTAALCAVGIGIINAGLFSP
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
SPQSLVPSPQSLLLLGYVASFSTKLSDTCASEVGKAYGKSTFLITTLQPVPRGTEGAVSL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEE
EGTLAGVVGSVAIAIIGWGVGLISPLGIVWCVLAALIATNLESVIGATLQSKYTWLTNEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNILNTLIGAIAAMLVAFVWASSFG
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFSFISSANPWLVGLGLNTILLSLVWFAPKKLLTPAGVFHAWLLGILIWGTLGWQGYLVV
CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHH
TFYFLVGSGVTRIGMAQKEALGIAEKRSGARGPENVWGSALTAALCAVGIGIINAGLFSP
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
SPQSLVPSPQSLLLLGYVASFSTKLSDTCASEVGKAYGKSTFLITTLQPVPRGTEGAVSL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEE
EGTLAGVVGSVAIAIIGWGVGLISPLGIVWCVLAALIATNLESVIGATLQSKYTWLTNEI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNILNTLIGAIAAMLVAFVWASSFG
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]