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The map label for this gene is ycfH [C]

Identifier: 17229085

GI number: 17229085

Start: 1865536

End: 1866321

Strand: Direct

Name: ycfH [C]

Synonym: alr1593

Alternate gene names: 17229085

Gene position: 1865536-1866321 (Clockwise)

Preceding gene: 17229084

Following gene: 17229086

Centisome position: 29.09

GC content: 47.33

Gene sequence:

>786_bases
ATGCAGCTAATTGATACCCACGTACACCTAAATTTTGACACCTTCCAGCCAGATTTGGCAGAGGTGCGATCGCGTTGGCA
AGAAGCAGGAGTTGTGCATTTAGTTCATTCCTGTGTTGAACCGGAGGAGTTTCCTAGTATTCAAGCCATCGCTCACCAAT
TTCCCGAACTAAGTTTTGCTGTAGGCCTGCATCCTTTAGATGCGGATAAATGGCAAAGTGACACAGGCGAGCAAATCTTA
TCTTTAGCTCGTTCCGATTCTAAGGTAGTGGCAATTGGCGAGACGGGGCTGGATTTCTATAAAGCCGATAACGATGAGCA
ACAGCGCATGGTATTTGAGGCACAATTAGCGATCGCCTCCCAACTTAACTTACCAGTAATTATTCACTGTCGGGATGCGG
CGGTGGCGGTAAGAGAAGTCTTGCAAACATGGCAGGAGCGTACAGGCGCTAAAATTCGGGGTGTCATGCACTGTTGGGGC
GGAACGCCGGAAGAAACCCAGTGGTTTCTCGATTTAGGCTTTTATATTAGCTTTAGCGGTACAGTTACGTTCAAAAGCGC
CAAGAGTATTCAAGCCTCAGCTGCAATGGTAAAAAGCGATCGCCTACTGATTGAAACAGACTGCCCTTTTTTATCACCGG
TTCCCAAACGCGGAGAAAAGCGGAATGAGCCTGCTTATGTACGCCATGTAGCCGAACAAGTAGCCGCGTTACGTGGAGAA
ACACTAGAGGTAATTTCTGCTCAAACTGCCCAAAATGCCTGTGAATTATTCGGTCTGGTGTTATAA

Upstream 100 bases:

>100_bases
CCCATCGAGCAAACAGCATAATGGTCAGTTGTCAGTGGCTAGTTGTCAGTTATTTTTTTACTACTGACGACCAATAACTG
ACAACTGACAACTAACAAAA

Downstream 100 bases:

>100_bases
AACTCACTAAGTAGAAACAAGGCAGAGTGTAGGGAGAAAAATTCTTAAATTCTGAATTGATTCTTCCCCATTCCCCGCTA
CCCAATCCCCGATCCCTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MQLIDTHVHLNFDTFQPDLAEVRSRWQEAGVVHLVHSCVEPEEFPSIQAIAHQFPELSFAVGLHPLDADKWQSDTGEQIL
SLARSDSKVVAIGETGLDFYKADNDEQQRMVFEAQLAIASQLNLPVIIHCRDAAVAVREVLQTWQERTGAKIRGVMHCWG
GTPEETQWFLDLGFYISFSGTVTFKSAKSIQASAAMVKSDRLLIETDCPFLSPVPKRGEKRNEPAYVRHVAEQVAALRGE
TLEVISAQTAQNACELFGLVL

Sequences:

>Translated_261_residues
MQLIDTHVHLNFDTFQPDLAEVRSRWQEAGVVHLVHSCVEPEEFPSIQAIAHQFPELSFAVGLHPLDADKWQSDTGEQIL
SLARSDSKVVAIGETGLDFYKADNDEQQRMVFEAQLAIASQLNLPVIIHCRDAAVAVREVLQTWQERTGAKIRGVMHCWG
GTPEETQWFLDLGFYISFSGTVTFKSAKSIQASAAMVKSDRLLIETDCPFLSPVPKRGEKRNEPAYVRHVAEQVAALRGE
TLEVISAQTAQNACELFGLVL
>Mature_261_residues
MQLIDTHVHLNFDTFQPDLAEVRSRWQEAGVVHLVHSCVEPEEFPSIQAIAHQFPELSFAVGLHPLDADKWQSDTGEQIL
SLARSDSKVVAIGETGLDFYKADNDEQQRMVFEAQLAIASQLNLPVIIHCRDAAVAVREVLQTWQERTGAKIRGVMHCWG
GTPEETQWFLDLGFYISFSGTVTFKSAKSIQASAAMVKSDRLLIETDCPFLSPVPKRGEKRNEPAYVRHVAEQVAALRGE
TLEVISAQTAQNACELFGLVL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=270, Percent_Identity=26.2962962962963, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI225903439, Length=226, Percent_Identity=27.4336283185841, Blast_Score=91, Evalue=8e-19,
Organism=Homo sapiens, GI110349730, Length=268, Percent_Identity=28.7313432835821, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI110349734, Length=268, Percent_Identity=27.9850746268657, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI226061853, Length=277, Percent_Identity=28.5198555956679, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI225903424, Length=206, Percent_Identity=28.6407766990291, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI226061614, Length=261, Percent_Identity=27.9693486590038, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI226061595, Length=233, Percent_Identity=27.4678111587983, Blast_Score=68, Evalue=6e-12,
Organism=Escherichia coli, GI1787342, Length=263, Percent_Identity=36.5019011406844, Blast_Score=154, Evalue=4e-39,
Organism=Escherichia coli, GI48994985, Length=264, Percent_Identity=35.6060606060606, Blast_Score=151, Evalue=5e-38,
Organism=Escherichia coli, GI87082439, Length=260, Percent_Identity=31.1538461538462, Blast_Score=117, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI17559024, Length=286, Percent_Identity=28.3216783216783, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71980746, Length=266, Percent_Identity=26.3157894736842, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17565396, Length=170, Percent_Identity=31.1764705882353, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17543026, Length=214, Percent_Identity=29.4392523364486, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24648690, Length=287, Percent_Identity=27.8745644599303, Blast_Score=100, Evalue=8e-22,
Organism=Drosophila melanogaster, GI221330018, Length=298, Percent_Identity=27.5167785234899, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24586117, Length=273, Percent_Identity=27.8388278388278, Blast_Score=95, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29058; Mature: 29058

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLIDTHVHLNFDTFQPDLAEVRSRWQEAGVVHLVHSCVEPEEFPSIQAIAHQFPELSFA
CCEEEEEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHCCHHHCCCHHHHHHHCCCCEEE
VGLHPLDADKWQSDTGEQILSLARSDSKVVAIGETGLDFYKADNDEQQRMVFEAQLAIAS
ECCCCCCCHHCCCCHHHHHHHHHCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHHHHH
QLNLPVIIHCRDAAVAVREVLQTWQERTGAKIRGVMHCWGGTPEETQWFLDLGFYISFSG
HCCCCEEEEECHHHHHHHHHHHHHHHHCCCHHHHEEEECCCCCCCCEEEEEEEEEEEECC
TVTFKSAKSIQASAAMVKSDRLLIETDCPFLSPVPKRGEKRNEPAYVRHVAEQVAALRGE
EEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
TLEVISAQTAQNACELFGLVL
HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQLIDTHVHLNFDTFQPDLAEVRSRWQEAGVVHLVHSCVEPEEFPSIQAIAHQFPELSFA
CCEEEEEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHCCHHHCCCHHHHHHHCCCCEEE
VGLHPLDADKWQSDTGEQILSLARSDSKVVAIGETGLDFYKADNDEQQRMVFEAQLAIAS
ECCCCCCCHHCCCCHHHHHHHHHCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHHHHH
QLNLPVIIHCRDAAVAVREVLQTWQERTGAKIRGVMHCWGGTPEETQWFLDLGFYISFSG
HCCCCEEEEECHHHHHHHHHHHHHHHHCCCHHHHEEEECCCCCCCCEEEEEEEEEEEECC
TVTFKSAKSIQASAAMVKSDRLLIETDCPFLSPVPKRGEKRNEPAYVRHVAEQVAALRGE
EEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
TLEVISAQTAQNACELFGLVL
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]