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The map label for this gene is yjcF [C]

Identifier: 17229071

GI number: 17229071

Start: 1847710

End: 1848378

Strand: Direct

Name: yjcF [C]

Synonym: alr1579

Alternate gene names: 17229071

Gene position: 1847710-1848378 (Clockwise)

Preceding gene: 17229070

Following gene: 17229072

Centisome position: 28.81

GC content: 39.61

Gene sequence:

>669_bases
ATGAGTATTAAATCCTGGTTTCTTAGAATCTCTACTATTGCCCTCTCAATTTTCTTTAGCTTAACGATCTTTATCTCACC
CGCTAACGCTTTTGTTCCTTCAGATCAGACTAAGTTACTGGTAACAAACGCCTGTGTTAATTGCGATCTATCAGGAGCTG
ATCTATCGAATAAAGATTTATATGGTAGCGCACTTGCTGGGGCAAATTTATCCAAAGCAAATCTTTCCGGTTCTCTACTC
AATGATGCCAAGCTAGAAGGAGCTAACCTCACAGGAGCTAATCTATCAGAGGCTATCATGATGGGAACTGACTTATCAAG
TGCCAATCTAACGGAGGCTAATCTTTCTCATGCAGATTTGTATAATGCCCTTCTGAGTAAGACAAAATTGTTAAACGCTA
ATTTAGGCGATGCAGATTTAACAGAGGCAGTTATCTCTGACGCAGATTTGTCTAATGCTTCGGGGAAAAATACAAAGCTC
AAAGCGGCAGTTCTTTCTAGAGCAAATTTATCGAATGCAGATTTTTCCAGTAGCTACATGAGAAATACGAGATTATCATC
TGCCATTCTTAAGGGAACTAATTTCTATAGAACCGATCTGTCCAATTCGCTAATGCCTGACGGAACTACTTATAACGGAG
ATGTCGCTAAGTTTGGAGCTACTCAGTAA

Upstream 100 bases:

>100_bases
TCTTCTGTGTAGGGGTTAACCTCAACCTCACCCAAGGGTAAAAAAAGACCCGTCTTTGATTTTGAAAAAATTGCACAATT
TTCTAGTTTAAAGAGCAAAC

Downstream 100 bases:

>100_bases
AACCTGAATCCTAACGATAATCTTGATGATGAGTCCTGAGAATATTTGAACACTCATCCTCGCAAAGGCATATCAATGAA
TTCTTCACTTGAAGCGGTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MSIKSWFLRISTIALSIFFSLTIFISPANAFVPSDQTKLLVTNACVNCDLSGADLSNKDLYGSALAGANLSKANLSGSLL
NDAKLEGANLTGANLSEAIMMGTDLSSANLTEANLSHADLYNALLSKTKLLNANLGDADLTEAVISDADLSNASGKNTKL
KAAVLSRANLSNADFSSSYMRNTRLSSAILKGTNFYRTDLSNSLMPDGTTYNGDVAKFGATQ

Sequences:

>Translated_222_residues
MSIKSWFLRISTIALSIFFSLTIFISPANAFVPSDQTKLLVTNACVNCDLSGADLSNKDLYGSALAGANLSKANLSGSLL
NDAKLEGANLTGANLSEAIMMGTDLSSANLTEANLSHADLYNALLSKTKLLNANLGDADLTEAVISDADLSNASGKNTKL
KAAVLSRANLSNADFSSSYMRNTRLSSAILKGTNFYRTDLSNSLMPDGTTYNGDVAKFGATQ
>Mature_221_residues
SIKSWFLRISTIALSIFFSLTIFISPANAFVPSDQTKLLVTNACVNCDLSGADLSNKDLYGSALAGANLSKANLSGSLLN
DAKLEGANLTGANLSEAIMMGTDLSSANLTEANLSHADLYNALLSKTKLLNANLGDADLTEAVISDADLSNASGKNTKLK
AAVLSRANLSNADFSSSYMRNTRLSSAILKGTNFYRTDLSNSLMPDGTTYNGDVAKFGATQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 23310; Mature: 23179

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKSWFLRISTIALSIFFSLTIFISPANAFVPSDQTKLLVTNACVNCDLSGADLSNKDL
CCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCC
YGSALAGANLSKANLSGSLLNDAKLEGANLTGANLSEAIMMGTDLSSANLTEANLSHADL
CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCCCCCCCCCCHHHH
YNALLSKTKLLNANLGDADLTEAVISDADLSNASGKNTKLKAAVLSRANLSNADFSSSYM
HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHCCCCCCCCCHHHH
RNTRLSSAILKGTNFYRTDLSNSLMPDGTTYNGDVAKFGATQ
HHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIKSWFLRISTIALSIFFSLTIFISPANAFVPSDQTKLLVTNACVNCDLSGADLSNKDL
CHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCC
YGSALAGANLSKANLSGSLLNDAKLEGANLTGANLSEAIMMGTDLSSANLTEANLSHADL
CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEECCCCCCCCCCCCCCCHHHH
YNALLSKTKLLNANLGDADLTEAVISDADLSNASGKNTKLKAAVLSRANLSNADFSSSYM
HHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHCCCCCCCCCHHHH
RNTRLSSAILKGTNFYRTDLSNSLMPDGTTYNGDVAKFGATQ
HHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA