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The map label for this gene is ycfQ [C]

Identifier: 17228305

GI number: 17228305

Start: 936227

End: 936844

Strand: Direct

Name: ycfQ [C]

Synonym: alr0810

Alternate gene names: 17228305

Gene position: 936227-936844 (Clockwise)

Preceding gene: 17228301

Following gene: 17228306

Centisome position: 14.6

GC content: 42.23

Gene sequence:

>618_bases
ATGGCACGCCCAAAAATTGGGGAAACAGATCGTTCAAATTCTACCGATAAAGTTGAGAAGATTCTGCAAGGTGCGATGCA
GGAATTTTTAGCCAACGGCTATGCTGCCACTAGTATGGATAAAGTAGCGGAAGCGGCTGGGGTTTCCAAAGCAACAGTAT
ATAGTCACTTTCAAGATAAAGAAGGTTTATTTAAAGCATTAATAGAGAAACTGGCCAAAAAACGCTTCCAGACAATTTTG
GGAACTCAAGCCTTGCAAGGGGACCCTTATATAGTGCTGAGAAGGTTAGCGAAAACAGCCTTACATCAGATGATAGACGA
TCCAGAATATCAGTCATTTGAGCGCTTGTTGATTGGTGAGTCAGCACGTTTTCCAGGGTTGGCGCAGATTTTTATCGGTA
GCATTGCCAAGCCAGCCATCGAAACCATTAGTAAATATATAGCTTCTCGTCCTGAACTCAACATCCCCGATCCAGAAGCT
ACAGCCAGAATTTTGATTGGTTCATTAGTGCATTTTGTGATGACACAAGAGATTATGCACGGTAAAGATATTATGCCAAT
GGAGAGCGATCGCCTAATTGATGCCCTAACACACCTAATTATTAACTGTGCTGAGTAA

Upstream 100 bases:

>100_bases
AAACCGACTAGTTTAGTCAATAGTTATTTATTGCTTTGGGCTATAAACTATTGACTGTAGGCTATGGACTCTATTGATAA
CGTTTCAGGATTATTGAAAA

Downstream 100 bases:

>100_bases
AAAATTAGGGGGGTAAGGGAAGTTCACGACCACAATTCCACTCGGCTTTAAACCTTATCTTTTGGTGAAAAAGAGCTTTT
TAGTAAAAGCGTACTACACT

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; TetR Family Transcriptional Regulatory Protein; TetR/AcrR Family Transcriptional Regulator; Transcriptional Regulatory Protein; Calsymin Transcriptional Regulator; Transcriptional Regulator Tetr Family; TetR-Family Transcriptional Regulator; Transcription Regulator Protein; Transcriptional Regulator TetR/AcrR Family; Bacterial Regulatory Protein TetR Family Protein; Transcriptional Regulator Protein; TetR Family Regulatory Protein; Transcriptional Regulator TetR; TRANSCRIPTIONal REGULATOR PROTEIN TetR/AcrR-Family

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MARPKIGETDRSNSTDKVEKILQGAMQEFLANGYAATSMDKVAEAAGVSKATVYSHFQDKEGLFKALIEKLAKKRFQTIL
GTQALQGDPYIVLRRLAKTALHQMIDDPEYQSFERLLIGESARFPGLAQIFIGSIAKPAIETISKYIASRPELNIPDPEA
TARILIGSLVHFVMTQEIMHGKDIMPMESDRLIDALTHLIINCAE

Sequences:

>Translated_205_residues
MARPKIGETDRSNSTDKVEKILQGAMQEFLANGYAATSMDKVAEAAGVSKATVYSHFQDKEGLFKALIEKLAKKRFQTIL
GTQALQGDPYIVLRRLAKTALHQMIDDPEYQSFERLLIGESARFPGLAQIFIGSIAKPAIETISKYIASRPELNIPDPEA
TARILIGSLVHFVMTQEIMHGKDIMPMESDRLIDALTHLIINCAE
>Mature_204_residues
ARPKIGETDRSNSTDKVEKILQGAMQEFLANGYAATSMDKVAEAAGVSKATVYSHFQDKEGLFKALIEKLAKKRFQTILG
TQALQGDPYIVLRRLAKTALHQMIDDPEYQSFERLLIGESARFPGLAQIFIGSIAKPAIETISKYIASRPELNIPDPEAT
ARILIGSLVHFVMTQEIMHGKDIMPMESDRLIDALTHLIINCAE

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22718; Mature: 22586

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARPKIGETDRSNSTDKVEKILQGAMQEFLANGYAATSMDKVAEAAGVSKATVYSHFQDK
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
EGLFKALIEKLAKKRFQTILGTQALQGDPYIVLRRLAKTALHQMIDDPEYQSFERLLIGE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
SARFPGLAQIFIGSIAKPAIETISKYIASRPELNIPDPEATARILIGSLVHFVMTQEIMH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
GKDIMPMESDRLIDALTHLIINCAE
CCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ARPKIGETDRSNSTDKVEKILQGAMQEFLANGYAATSMDKVAEAAGVSKATVYSHFQDK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
EGLFKALIEKLAKKRFQTILGTQALQGDPYIVLRRLAKTALHQMIDDPEYQSFERLLIGE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
SARFPGLAQIFIGSIAKPAIETISKYIASRPELNIPDPEATARILIGSLVHFVMTQEIMH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
GKDIMPMESDRLIDALTHLIINCAE
CCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA