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The map label for this gene is hoxY [H]

Identifier: 17228259

GI number: 17228259

Start: 885335

End: 885880

Strand: Direct

Name: hoxY [H]

Synonym: alr0764

Alternate gene names: 17228259

Gene position: 885335-885880 (Clockwise)

Preceding gene: 17228258

Following gene: 17228260

Centisome position: 13.8

GC content: 44.32

Gene sequence:

>546_bases
ATGTCTCGCCTGAAGTTAGCAACAGTATGGTTAGGTGGATGTTCTGGCTGTCATATGTCCTTTCTTGATTTGGACGAATG
GCTGATTGATTTAGCTGCACAGGCAGATATAGTCTTTAGTCCCTTTGCAGATATTAAAGAATATCCAGAGGGTGTAGATG
TGGTATTGGTGGAAGGAGCGATCGCCAATGAAGAACATCTGACTACAATCAAGATTGTCAGGGAACGTTCTCAAATATTG
ATTTCCTTTGGTGACTGTGCGGTAACTGGTAACGTCACCGCCTTACGTAATCCCTTGGGTAGTGCTGAATCAGTCTTACA
ACGTTGTTACATCCAAGCAGCCGATATCAACCCTCAAATTCCTCACGAGCCAGGAATCGTACCGTCTTTATTGGATAGAG
TCACACCTGTACACTCCATAGTCCCCGTAGATATTTATTTACCAGGTTGTCCACCCTCTGCAACCCGGATTAGAGCAGCT
TTAGAACCACTGTTACAAGGCGAAACACCACATTTAGCAGGGCGGGAATTTATCAAATTTGGCTAA

Upstream 100 bases:

>100_bases
ATGAGTGCTGAGTGGGGAGGCAGGGGAAGTAAAGAAGAATGACTATGGACTATGGACTAATGACCTTTTTTGAATTTTGA
ATTTTGAATTTTGAATTATT

Downstream 100 bases:

>100_bases
TATATTGATTTTGAATTTTGTTGGCGCAGCCTTGCCGTAGGCTATTTTGAATTCCCCAAAGGGGTTAACAGGGTAATTAT
GTTAAAAGCATCAGACGTTA

Product: hydrogenase small subunit

Products: H+; NADH

Alternate protein names: Methyl viologen-reducing hydrogenase subunit gamma; MVH subunit G [H]

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MSRLKLATVWLGGCSGCHMSFLDLDEWLIDLAAQADIVFSPFADIKEYPEGVDVVLVEGAIANEEHLTTIKIVRERSQIL
ISFGDCAVTGNVTALRNPLGSAESVLQRCYIQAADINPQIPHEPGIVPSLLDRVTPVHSIVPVDIYLPGCPPSATRIRAA
LEPLLQGETPHLAGREFIKFG

Sequences:

>Translated_181_residues
MSRLKLATVWLGGCSGCHMSFLDLDEWLIDLAAQADIVFSPFADIKEYPEGVDVVLVEGAIANEEHLTTIKIVRERSQIL
ISFGDCAVTGNVTALRNPLGSAESVLQRCYIQAADINPQIPHEPGIVPSLLDRVTPVHSIVPVDIYLPGCPPSATRIRAA
LEPLLQGETPHLAGREFIKFG
>Mature_180_residues
SRLKLATVWLGGCSGCHMSFLDLDEWLIDLAAQADIVFSPFADIKEYPEGVDVVLVEGAIANEEHLTTIKIVRERSQILI
SFGDCAVTGNVTALRNPLGSAESVLQRCYIQAADINPQIPHEPGIVPSLLDRVTPVHSIVPVDIYLPGCPPSATRIRAAL
EPLLQGETPHLAGREFIKFG

Specific function: Part of a complex that provides reducing equivalents for heterodisulfide reductase [H]

COG id: COG1941

COG function: function code C; Coenzyme F420-reducing hydrogenase, gamma subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the [NiFe]/[NiFeSe] hydrogenase small subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006137 [H]

Pfam domain/function: PF01058 Oxidored_q6 [H]

EC number: 1.12.1.2

Molecular weight: Translated: 19637; Mature: 19506

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLKLATVWLGGCSGCHMSFLDLDEWLIDLAAQADIVFSPFADIKEYPEGVDVVLVEGA
CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCCHHHHHCCCCCEEEEEECC
IANEEHLTTIKIVRERSQILISFGDCAVTGNVTALRNPLGSAESVLQRCYIQAADINPQI
CCCCCHHHHHHHHHHCCCEEEEECCEEEECCHHHHHCCCCCHHHHHHHHHHHCCCCCCCC
PHEPGIVPSLLDRVTPVHSIVPVDIYLPGCPPSATRIRAALEPLLQGETPHLAGREFIKF
CCCCCCHHHHHHHCCCHHHEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCC
G
C
>Mature Secondary Structure 
SRLKLATVWLGGCSGCHMSFLDLDEWLIDLAAQADIVFSPFADIKEYPEGVDVVLVEGA
CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEECCCHHHHHCCCCCEEEEEECC
IANEEHLTTIKIVRERSQILISFGDCAVTGNVTALRNPLGSAESVLQRCYIQAADINPQI
CCCCCHHHHHHHHHHCCCEEEEECCEEEECCHHHHHCCCCCHHHHHHHHHHHCCCCCCCC
PHEPGIVPSLLDRVTPVHSIVPVDIYLPGCPPSATRIRAALEPLLQGETPHLAGREFIKF
CCCCCCHHHHHHHCCCHHHEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2; NAD+

Specific reaction: H2 + NAD+ = H+ + NADH

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2654933; 9371463 [H]