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The map label for this gene is hupD [H]

Identifier: 17228191

GI number: 17228191

Start: 803285

End: 804436

Strand: Direct

Name: hupD [H]

Synonym: alr0696

Alternate gene names: 17228191

Gene position: 803285-804436 (Clockwise)

Preceding gene: 17228190

Following gene: 17228192

Centisome position: 12.52

GC content: 40.89

Gene sequence:

>1152_bases
ATGAAATATGTCGATGAATTTCGGGAACCAGAAAAAGCTGAAGCCTTACGCCGTGAGATAGAAAAACTCAGCCAGCAATT
AGATAAACATATCAAAATTATGGAAGTATGCGGCGGGCATACTCACTCTATTTTTAAATACGGTATTGAAGAAATCTTAC
CAGCCAACATAGAACTGATTCACGGGCCTGGTTGTCCAGTTTGTGTTATGCCTAAGGGGAGATTAGATGATGCGATCGCT
ATCTCCCAAAATCCCAATGTCATTTTAACAACATTTGGCGACACCATGCGCGTCCCTGGTTCCAAAACCACCTTGCTGCA
AGCCAAAGCCCAAGGCGCAGATATCCGCATGGTTTACTCTCCCCTAGATAGTCTGCAAATTGCCAGAAATCACCCTGATA
AAGAAATTGTATTCTTCGCTTTGGGCTTTGAAACCACAGCCCCCAGCACCGCCCTTACCATCCTCCAAGCTGCTTCGGAA
AATATTACTAACTTTAGTATGTTTTCTAATCACGTCCTCGTAATTCCCGCCTTGCAAGCTTTATTAAATAATCCTGATTT
GCAGCTAGATGGCTTTATTGGCCCTGGTCATGTGAGTATGGTAATTGGTACTGAACCTTATGAATTTATTGCCCAACAAT
ATCATAAGCCAATTGTTGTTTCCGGTTTTGAACCGTTAGATATTTTCCAATCCATTTGGATGTTGTTACAACAACTAGTA
GAAAATCGCTGTGAAGTAGAAAATCAATATAATAGATTAGTTCAAAAAGGTGGGAATCAAATAGCACTAGCAGCCATGCA
CAAAGTATTTGCAGTTCGGGAAAAATTTGCATGGCGTGGCTTAGATGAAATCCCGGATTCTGGGTTAAAAATTAGAGAAG
AATATGCCCAATTTGATGCAGAATTAAAATTTACTATTCCTAACCTAAAAGTAGCCGACCATAAAGCCTGTAAGTGCGGC
GAAATTCTTAAAGGAGTCCTCAAACCTTGGCAGTGTAAAGTATTTGGTACAGCTTGCACACCAGAAACACCAATAGGTAC
TTGCATGGTGTCCTCAGAAGGAGCTTGTGCAGCATACTATAAATATGGCAGATTTTCGACAACGTTGCAAAAACAAGCAG
CCGAAAAGCCAAAAGTGACTATCTCGTCATAA

Upstream 100 bases:

>100_bases
TAGAATCAACGAACAAGAAGCAGCCGAAACCCTAAAATTATTACAAGAAATCGCCGCCCTACAAGCATAAATATTTTCTA
ATAATTACGAATTAAGAACT

Downstream 100 bases:

>100_bases
CCTCCAAAAAAGCAGCAACACACTCCACACAACAACACTGCGAGGATATTTATATGCCATTTGTCACCGTTAAAATTGCC
AGAGGACACTCCATCGAAAA

Product: hydrogenase expression/formation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MKYVDEFREPEKAEALRREIEKLSQQLDKHIKIMEVCGGHTHSIFKYGIEEILPANIELIHGPGCPVCVMPKGRLDDAIA
ISQNPNVILTTFGDTMRVPGSKTTLLQAKAQGADIRMVYSPLDSLQIARNHPDKEIVFFALGFETTAPSTALTILQAASE
NITNFSMFSNHVLVIPALQALLNNPDLQLDGFIGPGHVSMVIGTEPYEFIAQQYHKPIVVSGFEPLDIFQSIWMLLQQLV
ENRCEVENQYNRLVQKGGNQIALAAMHKVFAVREKFAWRGLDEIPDSGLKIREEYAQFDAELKFTIPNLKVADHKACKCG
EILKGVLKPWQCKVFGTACTPETPIGTCMVSSEGACAAYYKYGRFSTTLQKQAAEKPKVTISS

Sequences:

>Translated_383_residues
MKYVDEFREPEKAEALRREIEKLSQQLDKHIKIMEVCGGHTHSIFKYGIEEILPANIELIHGPGCPVCVMPKGRLDDAIA
ISQNPNVILTTFGDTMRVPGSKTTLLQAKAQGADIRMVYSPLDSLQIARNHPDKEIVFFALGFETTAPSTALTILQAASE
NITNFSMFSNHVLVIPALQALLNNPDLQLDGFIGPGHVSMVIGTEPYEFIAQQYHKPIVVSGFEPLDIFQSIWMLLQQLV
ENRCEVENQYNRLVQKGGNQIALAAMHKVFAVREKFAWRGLDEIPDSGLKIREEYAQFDAELKFTIPNLKVADHKACKCG
EILKGVLKPWQCKVFGTACTPETPIGTCMVSSEGACAAYYKYGRFSTTLQKQAAEKPKVTISS
>Mature_383_residues
MKYVDEFREPEKAEALRREIEKLSQQLDKHIKIMEVCGGHTHSIFKYGIEEILPANIELIHGPGCPVCVMPKGRLDDAIA
ISQNPNVILTTFGDTMRVPGSKTTLLQAKAQGADIRMVYSPLDSLQIARNHPDKEIVFFALGFETTAPSTALTILQAASE
NITNFSMFSNHVLVIPALQALLNNPDLQLDGFIGPGHVSMVIGTEPYEFIAQQYHKPIVVSGFEPLDIFQSIWMLLQQLV
ENRCEVENQYNRLVQKGGNQIALAAMHKVFAVREKFAWRGLDEIPDSGLKIREEYAQFDAELKFTIPNLKVADHKACKCG
EILKGVLKPWQCKVFGTACTPETPIGTCMVSSEGACAAYYKYGRFSTTLQKQAAEKPKVTISS

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=366, Percent_Identity=51.3661202185792, Blast_Score=418, Evalue=1e-118,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 42588; Mature: 42588

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYVDEFREPEKAEALRREIEKLSQQLDKHIKIMEVCGGHTHSIFKYGIEEILPANIELI
CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEE
HGPGCPVCVMPKGRLDDAIAISQNPNVILTTFGDTMRVPGSKTTLLQAKAQGADIRMVYS
ECCCCCEEECCCCCCCCEEEECCCCCEEEEECCCEEECCCCCCEEEEEECCCCCEEEEEC
PLDSLQIARNHPDKEIVFFALGFETTAPSTALTILQAASENITNFSMFSNHVLVIPALQA
CHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEHHCCCEEEHHHHHH
LLNNPDLQLDGFIGPGHVSMVIGTEPYEFIAQQYHKPIVVSGFEPLDIFQSIWMLLQQLV
HHCCCCEEEECEECCCEEEEEECCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHH
ENRCEVENQYNRLVQKGGNQIALAAMHKVFAVREKFAWRGLDEIPDSGLKIREEYAQFDA
HHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHCCC
ELKFTIPNLKVADHKACKCGEILKGVLKPWQCKVFGTACTPETPIGTCMVSSEGACAAYY
EEEEECCCCEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCCCCEEEEE
KYGRFSTTLQKQAAEKPKVTISS
ECCCHHHHHHHHHCCCCCEEECC
>Mature Secondary Structure
MKYVDEFREPEKAEALRREIEKLSQQLDKHIKIMEVCGGHTHSIFKYGIEEILPANIELI
CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEE
HGPGCPVCVMPKGRLDDAIAISQNPNVILTTFGDTMRVPGSKTTLLQAKAQGADIRMVYS
ECCCCCEEECCCCCCCCEEEECCCCCEEEEECCCEEECCCCCCEEEEEECCCCCEEEEEC
PLDSLQIARNHPDKEIVFFALGFETTAPSTALTILQAASENITNFSMFSNHVLVIPALQA
CHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEHHCCCEEEHHHHHH
LLNNPDLQLDGFIGPGHVSMVIGTEPYEFIAQQYHKPIVVSGFEPLDIFQSIWMLLQQLV
HHCCCCEEEECEECCCEEEEEECCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHH
ENRCEVENQYNRLVQKGGNQIALAAMHKVFAVREKFAWRGLDEIPDSGLKIREEYAQFDA
HHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHCCC
ELKFTIPNLKVADHKACKCGEILKGVLKPWQCKVFGTACTPETPIGTCMVSSEGACAAYY
EEEEECCCCEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCCCCEEEEE
KYGRFSTTLQKQAAEKPKVTISS
ECCCHHHHHHHHHCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12597275; 8510650 [H]