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The map label for this gene is cpcG4

Identifier: 17228033

GI number: 17228033

Start: 627371

End: 628132

Strand: Direct

Name: cpcG4

Synonym: alr0537

Alternate gene names: 17228033

Gene position: 627371-628132 (Clockwise)

Preceding gene: 17228032

Following gene: 17228036

Centisome position: 9.78

GC content: 45.14

Gene sequence:

>762_bases
ATGGCACTGCCATTACTCCAATACAAACCAAGCTCTCAAAATCACCGGGTTACCAGCTTCGGTGCAGCTGACCAAAATGA
AGATACACCATACATCTATCGTATAGAAGATGTCAGCTCATACACTGATATTCAAAACATCATTTGGGCTTCCTATCGCC
AAGTCTTCAGCGAACATGAAATCCTCAAATTCAACCGCCAAAAAACCCTGGAATCCCAGGTAAAGAACGGTTCTATTTCT
GTCAGAGATTTCATTCGTGGTTTAGCTAAGTCTGAAGCCTTCTACCGTTTAGTAGTCTCCGTTAACAACAACTACCGCCT
AGTTGACATCACCCTCAAGCGCCTGTTGGGTCGTTCTTCTTACAACAAAGACGAGCAAATCGCTTGGTCTATTGTTATCG
GTACTAAAGGTTTTAGCGGTTTTGTTGATGCACTCATCGACAGTGAAGAGTACACCAAGAACTTTGGCGAAAATATTGTA
CCTTACCAACGCAAACGGATGGAAGGTCGTCCCCACAACTTGGTAACACCACGCTACGGCGAAGACTTCCAAGAAAAAGC
AGGCACAGTTCAAACCGACTGGCGCTTCACCTTGGACAAATTCTACAGCCGCAAGTCCCAAGAAAAACAACTGCGCGAAG
GCGACCCTCGGAAGTTTGCAGATTTGGCAGCGTCAGTTGGTAACCAAGGTAACTACGCTCAAAGAATCTCTGCTTTTGAT
ATTGACTATCTAAATGCAGTGCCAAACCGTAGCAGACGCTAA

Upstream 100 bases:

>100_bases
GGGAAAATAAGTAAAGCATGAAGGAGGATTTTGAGAAATCAAACCTCTTTCACTTAACAAAGCTAGCTGTTTAACTTTTT
AATAAGGGGAATAACTCAGC

Downstream 100 bases:

>100_bases
GATTTAAAATCTGAGTGTCTAAGTTTGATACTGGGTCTAGTTTTTGCGTTGATGTGACGAAAAGTTTGCAGTTTCTCTGT
TGGCTGGGCGTAACATTGGG

Product: phycobilisome rod-core linker protein

Products: NA

Alternate protein names: L-RC 29.2

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MALPLLQYKPSSQNHRVTSFGAADQNEDTPYIYRIEDVSSYTDIQNIIWASYRQVFSEHEILKFNRQKTLESQVKNGSIS
VRDFIRGLAKSEAFYRLVVSVNNNYRLVDITLKRLLGRSSYNKDEQIAWSIVIGTKGFSGFVDALIDSEEYTKNFGENIV
PYQRKRMEGRPHNLVTPRYGEDFQEKAGTVQTDWRFTLDKFYSRKSQEKQLREGDPRKFADLAASVGNQGNYAQRISAFD
IDYLNAVPNRSRR

Sequences:

>Translated_253_residues
MALPLLQYKPSSQNHRVTSFGAADQNEDTPYIYRIEDVSSYTDIQNIIWASYRQVFSEHEILKFNRQKTLESQVKNGSIS
VRDFIRGLAKSEAFYRLVVSVNNNYRLVDITLKRLLGRSSYNKDEQIAWSIVIGTKGFSGFVDALIDSEEYTKNFGENIV
PYQRKRMEGRPHNLVTPRYGEDFQEKAGTVQTDWRFTLDKFYSRKSQEKQLREGDPRKFADLAASVGNQGNYAQRISAFD
IDYLNAVPNRSRR
>Mature_252_residues
ALPLLQYKPSSQNHRVTSFGAADQNEDTPYIYRIEDVSSYTDIQNIIWASYRQVFSEHEILKFNRQKTLESQVKNGSISV
RDFIRGLAKSEAFYRLVVSVNNNYRLVDITLKRLLGRSSYNKDEQIAWSIVIGTKGFSGFVDALIDSEEYTKNFGENIVP
YQRKRMEGRPHNLVTPRYGEDFQEKAGTVQTDWRFTLDKFYSRKSQEKQLREGDPRKFADLAASVGNQGNYAQRISAFDI
DYLNAVPNRSRR

Specific function: Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PYG4_NOSS1 (P29989)

Other databases:

- EMBL:   M80435
- EMBL:   BA000019
- PIR:   AH1873
- PIR:   JS0595
- RefSeq:   NP_484581.1
- STRING:   P29989
- GeneID:   1104133
- GenomeReviews:   BA000019_GR
- KEGG:   ana:alr0537
- eggNOG:   NOG122923
- HOGENOM:   HBG287759
- OMA:   GELPFAR
- ProtClustDB:   CLSK391631
- BioCyc:   NSP103690:ALR0537-MONOMER
- GO:   GO:0030089
- GO:   GO:0015979
- InterPro:   IPR001297
- InterPro:   IPR016470
- PIRSF:   PIRSF005898
- ProDom:   PD000852

Pfam domain/function: PF00427 PBS_linker_poly

EC number: NA

Molecular weight: Translated: 29323; Mature: 29192

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS51445 PBS_LINKER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALPLLQYKPSSQNHRVTSFGAADQNEDTPYIYRIEDVSSYTDIQNIIWASYRQVFSEHE
CCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCHH
ILKFNRQKTLESQVKNGSISVRDFIRGLAKSEAFYRLVVSVNNNYRLVDITLKRLLGRSS
HHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCEEEEEEEECCCEEEEHHHHHHHHCCCC
YNKDEQIAWSIVIGTKGFSGFVDALIDSEEYTKNFGENIVPYQRKRMEGRPHNLVTPRYG
CCCCCCEEEEEEEECCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCC
EDFQEKAGTVQTDWRFTLDKFYSRKSQEKQLREGDPRKFADLAASVGNQGNYAQRISAFD
CCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHC
IDYLNAVPNRSRR
CHHHHCCCCCCCC
>Mature Secondary Structure 
ALPLLQYKPSSQNHRVTSFGAADQNEDTPYIYRIEDVSSYTDIQNIIWASYRQVFSEHE
CCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCHH
ILKFNRQKTLESQVKNGSISVRDFIRGLAKSEAFYRLVVSVNNNYRLVDITLKRLLGRSS
HHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCEEEEEEEECCCEEEEHHHHHHHHCCCC
YNKDEQIAWSIVIGTKGFSGFVDALIDSEEYTKNFGENIVPYQRKRMEGRPHNLVTPRYG
CCCCCCEEEEEEEECCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCC
EDFQEKAGTVQTDWRFTLDKFYSRKSQEKQLREGDPRKFADLAASVGNQGNYAQRISAFD
CCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHC
IDYLNAVPNRSRR
CHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1743523; 11759840