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The map label for this gene is yggS [C]

Identifier: 17227982

GI number: 17227982

Start: 581002

End: 581670

Strand: Direct

Name: yggS [C]

Synonym: alr0486

Alternate gene names: 17227982

Gene position: 581002-581670 (Clockwise)

Preceding gene: 17227981

Following gene: 17227983

Centisome position: 9.06

GC content: 41.41

Gene sequence:

>669_bases
ATGATTAGTTCGATCAACGAACGTATTACTCAAATTCGGGCTTCCCTACCGCCTTCAGTCAGGCTAATTGCTGTCACAAA
GCAAATGCCGACTGAAGTTATTCGTGCTGCTTATGCTGCTGGTATCCGCGATTTTGGCGAAAATCGTATCCAAGAAGCTG
CTAGTAAAAAAGCCCAGTTACATGACTTACCGGATATTACTTGGCACTTTATTGGACATTTGCAAGCGAACAAAGCCAAA
AAAGCTCTAGAACAATTTCAATGGATTCACTCTGTAGATAATTTGAAACTAGCACAGCGTTTAGACCAACTAGCGCAACA
GCTAGGAGTCAATCCTCAAGTTTGTCTACAGGTGAAAATCCTCCCAGATCCGAATAAGTCTGGTTGGACTGTACCAGAAC
TGCTGACAGATTTACCTGCACTCAACCACTGTAAAACTTTACAAATTCAGGGTTTAATGACAATTCCGCCTTTTGGCTTA
AATGATGCGGAAATTTTTTATGTATTTAATACTACTTACAAATTAGCCAAAGATATTGCTGAACAAAACTGGGATCATAT
TCACATGGGTCAGTTGTCGATGGGTATGTCAGGGGACTACCAACTTGCAGTACAAGCTGGGGCGACGATGGTAAGATTGG
GGACTATATTATTTGGGCAGCGTACTTAA

Upstream 100 bases:

>100_bases
AGGCGAGAATGTTGTTAGAAAATCGCTTGCGTAATTTGCGTCGCAATGGTCAATCACAGGAGTACGATCAGCTTCAGAGT
GTTTTCCAACGCACCTTCCA

Downstream 100 bases:

>100_bases
GCAATATTACTCGGATTTTTTTCTAGTATCAAATAGCCATGGGTATGGAATACGGACAATTATTTTCCATAATAGTGCAA
TAAGTTACAAGATTTCCACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MISSINERITQIRASLPPSVRLIAVTKQMPTEVIRAAYAAGIRDFGENRIQEAASKKAQLHDLPDITWHFIGHLQANKAK
KALEQFQWIHSVDNLKLAQRLDQLAQQLGVNPQVCLQVKILPDPNKSGWTVPELLTDLPALNHCKTLQIQGLMTIPPFGL
NDAEIFYVFNTTYKLAKDIAEQNWDHIHMGQLSMGMSGDYQLAVQAGATMVRLGTILFGQRT

Sequences:

>Translated_222_residues
MISSINERITQIRASLPPSVRLIAVTKQMPTEVIRAAYAAGIRDFGENRIQEAASKKAQLHDLPDITWHFIGHLQANKAK
KALEQFQWIHSVDNLKLAQRLDQLAQQLGVNPQVCLQVKILPDPNKSGWTVPELLTDLPALNHCKTLQIQGLMTIPPFGL
NDAEIFYVFNTTYKLAKDIAEQNWDHIHMGQLSMGMSGDYQLAVQAGATMVRLGTILFGQRT
>Mature_222_residues
MISSINERITQIRASLPPSVRLIAVTKQMPTEVIRAAYAAGIRDFGENRIQEAASKKAQLHDLPDITWHFIGHLQANKAK
KALEQFQWIHSVDNLKLAQRLDQLAQQLGVNPQVCLQVKILPDPNKSGWTVPELLTDLPALNHCKTLQIQGLMTIPPFGL
NDAEIFYVFNTTYKLAKDIAEQNWDHIHMGQLSMGMSGDYQLAVQAGATMVRLGTILFGQRT

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=238, Percent_Identity=34.453781512605, Blast_Score=119, Evalue=2e-27,
Organism=Escherichia coli, GI1789321, Length=210, Percent_Identity=37.6190476190476, Blast_Score=130, Evalue=9e-32,
Organism=Caenorhabditis elegans, GI17533025, Length=233, Percent_Identity=33.0472103004292, Blast_Score=103, Evalue=6e-23,
Organism=Saccharomyces cerevisiae, GI6319435, Length=211, Percent_Identity=33.6492890995261, Blast_Score=101, Evalue=9e-23,
Organism=Drosophila melanogaster, GI45550861, Length=229, Percent_Identity=36.2445414847162, Blast_Score=117, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24834; Mature: 24834

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSINERITQIRASLPPSVRLIAVTKQMPTEVIRAAYAAGIRDFGENRIQEAASKKAQL
CCCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HDLPDITWHFIGHLQANKAKKALEQFQWIHSVDNLKLAQRLDQLAQQLGVNPQVCLQVKI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
LPDPNKSGWTVPELLTDLPALNHCKTLQIQGLMTIPPFGLNDAEIFYVFNTTYKLAKDIA
ECCCCCCCCCHHHHHHHCCCCCCCCEEEECEEEECCCCCCCCCEEEEEECCHHHHHHHHH
EQNWDHIHMGQLSMGMSGDYQLAVQAGATMVRLGTILFGQRT
HCCCCEEEECCEECCCCCCEEEEEECCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MISSINERITQIRASLPPSVRLIAVTKQMPTEVIRAAYAAGIRDFGENRIQEAASKKAQL
CCCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HDLPDITWHFIGHLQANKAKKALEQFQWIHSVDNLKLAQRLDQLAQQLGVNPQVCLQVKI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
LPDPNKSGWTVPELLTDLPALNHCKTLQIQGLMTIPPFGLNDAEIFYVFNTTYKLAKDIA
ECCCCCCCCCHHHHHHHCCCCCCCCEEEECEEEECCCCCCCCCEEEEEECCHHHHHHHHH
EQNWDHIHMGQLSMGMSGDYQLAVQAGATMVRLGTILFGQRT
HCCCCEEEECCEECCCCCCEEEEEECCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]