| Definition | Nostoc sp. PCC 7120, complete genome. |
|---|---|
| Accession | NC_003272 |
| Length | 6,413,771 |
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The map label for this gene is rhtA [H]
Identifier: 17227893
GI number: 17227893
Start: 466625
End: 469228
Strand: Direct
Name: rhtA [H]
Synonym: alr0397
Alternate gene names: 17227893
Gene position: 466625-469228 (Clockwise)
Preceding gene: 17227882
Following gene: 17227898
Centisome position: 7.28
GC content: 44.7
Gene sequence:
>2604_bases ATGGATTGTGTCACTAGCCATAATCCAGTCGCAACTTTTAGGTGCGAAGTGAAAATGAAACCCGGAAAAATCCTTTTTCT TCTCTTGCTCACAGGTTCTGTTTGGTCATTAATCAGCCATCCTGGCAAAACTCAGGAAGCCCCATCCCCAACACAACTAA ATACACAATCACCAGCACCTAACGCTCAGGAATTGACACAAGTAACTGGCGTGAGAGTTGTTCCTACAGTTCAAGGTCTA GAGGTGATATTAGATAGTACAGCCGCCGAAAAATTGCAGGTATCAACGCAAAATCAAGGCAATAGTTTGATTGCTGATAT CACTAACGCTCAACTCAACTTGTCTGAGGGAAATACATTCAGCCAAAATAATCCAGCCACAGGTGTAACTAATGTGACTG TGGTTAATCACAATGACAATACAATCCGGGTGACTGTGACGGGAGAGAAAAGCCTTCCCAAATTTGAGCTATTCGATAGT GATACAGGTTTGATTTTGGCATTCACGGCTACTGAAGTAGCTCAAGATTCCCCCGCAGAAGTAGATGAACCAATTGAACT GGTGGTGACAGCAACGCGTACCGAAACACCTATACAAAATGTTCCGCGTTCCATCACTGTCATTGACCGCGAACAAATCG CCGCACAAGCCAGCACTTCCCGCAACCTCATAGAAATTCTGGGGAAAACAGTTCCCGGTTTAGCACCGCCAGCCCAAGGC GCTAGTAATTTTGGTCTAACTCTCAGGGGCAGGAATCCCCAAGTGTTGATTGATGGGGTTCCCCAATCGACAACCAGAAA TGCGTCGCGGGATTTGCGAACAATTGACGCGGCGGCGATTGAACGAATTGAAGTAGTACGCGGCCCCAGTGCAATTTATG GTGATGGTGCAACAGGGGGTGTGATTAATATCATCACCAGGCGACCGACTGAAGAAAAATTAACTTCCCGGACAGAAGTT GGTGTAAGTGCAGCTTTAGGTAATTTGGAAGGGGACAGTTTTAGCACTAACCTACAGCATTTTATCTCCGCGAAACAAGG GAACTTTGATTTTACCTTTAACTTTGCAGTGGCTAAAAATGGCGGATTCTTTGATGCTCAAGGCGATCGCATTCCCTCTG ATCCTAATGCCCAAGGTGGCTTTGCTGATGCTTCTAGTATTAACTTGTTTGGTAAGTTTGGTATTGATATAGACGCAAAT CAACGTCTACAACTCACCTTTAATCGCTTCGACGAAAAACAAGATACAGATATCGCTAGTGACCCCAGGGTCAATACTAT CCCTGGAAGACAAAAGGCTCGTGCTTTAGAAGGGTTGAGTTTGGATGAAAGGCCAGGGAATGAGAACACATTCATCAACC TGCAATACACCCATGACGATTTATTCAATAGCAAACTACAAGCCCAGTTATATTACCGGGATTACCTGACACGCTTCTTT CCCTTTGATGGTCGTAGCTTTGCTAGTTTGGGTAACGAAATCTTTCAATCGCGGGTGGAGTCAGAAAAGTATGGCGGACG CTTGCAGATAGAAACACCTTTATTTAATCAAGGTGCGGCCAAACTACTTTGGGGTGTAGATTACTCCCAGGAAGATACCT CCCAACCTGTCTCTGTATTCGACCAAGCTGCCTTTGTCGCCAGTGGGGGGTTAGCATTTCGTAAAACAGGCGATCGCTCT TGGACTCCTCCTTTAGAATTAAGGAGTCTGGGATTATTCGCTCAGTTGAATTGGGAAATAAGCGATCGCTTCGTCTTCAA TGGTGGTGTACGCTACGAAAACGCTGATGTAAGTGTCAATGATTTCCGCACCTTAGCCAATCCCAACGTCACTATTGGCG GCGGTGATTTGAACTTTAACGCCACACTGTTTAATGTAGGAGCAGTATACGCCCTCAATCCCCAACTGAGTGTATTTGCT AACTATGCTCAAGGTTTCTCACTATCAGATATTGGTTTAGCACTCCGCAACGCCCCACCAGGATTTTCTGTAGAATCTCT CAATCCCGAACCGCAAAAAGTAGATAACTATGAAATTGGCATTCGCGGACAATGGGATACTGTACAAGCATCACTCTCAG CTTTTTATAACGAGTCCGACTTGGGTACAACTTTCACCGCGCCGGGGACTGTCATCCGCGCCCCAGAGAGAATTTATGGT CTAGAAGCAGCCATTGACGCACAACCTAGTTCTACATGGCAAGTTGGCGGGACATTCACTCTCATTGGTGGTGAAATTGA CAGCAATAATGATGGCGATTACGAATCATTAGATGGGTTTAGGATTCCCCCGTTGAAACTTACAGCCTATGTAGAAAATG AGACTTTACCCGGTTGGCGAAATCGTCTACAAGCTTTGTACTCTGGTAATAGAGAAGTCTTTGGTAATAACAATACGGCC TTTGGTAGGAGACCTGTAGAAAGTTATTTAACAGTAGACTACATCAGTAGTATTAAACTCGGTGCCGGAACATTACAACT GGGATTAGAAAACCTATTTAATAGTCAATATTTCCCCGTAGTTTCCCAATTGCAAGCAAATGATAGCGCCTATGCTGCTG CTAGAGGAAGGACTTTGAGTATTAAGTATTCTTTTGATTGGTAA
Upstream 100 bases:
>100_bases TTGAGATACTTCTTCAAGAAAATACTTGTATAAGTACTGAAATAGATATATTTTAATAAAATCAAAAACTATTGCTAATG CAAGTCAATAATAATAGGCG
Downstream 100 bases:
>100_bases ATTCTTTTCTTGATGAAGTAACTGAGGGAGGCGGAAAGCTTGATCATCCGCACTCCCAAATGAATCAATTCAAAATTCAA AATACCAATATTCAAATCTC
Product: hypothetical protein
Products: NA
Alternate protein names: TonB-dependent siderophore receptor rhtA [H]
Number of amino acids: Translated: 867; Mature: 867
Protein sequence:
>867_residues MDCVTSHNPVATFRCEVKMKPGKILFLLLLTGSVWSLISHPGKTQEAPSPTQLNTQSPAPNAQELTQVTGVRVVPTVQGL EVILDSTAAEKLQVSTQNQGNSLIADITNAQLNLSEGNTFSQNNPATGVTNVTVVNHNDNTIRVTVTGEKSLPKFELFDS DTGLILAFTATEVAQDSPAEVDEPIELVVTATRTETPIQNVPRSITVIDREQIAAQASTSRNLIEILGKTVPGLAPPAQG ASNFGLTLRGRNPQVLIDGVPQSTTRNASRDLRTIDAAAIERIEVVRGPSAIYGDGATGGVINIITRRPTEEKLTSRTEV GVSAALGNLEGDSFSTNLQHFISAKQGNFDFTFNFAVAKNGGFFDAQGDRIPSDPNAQGGFADASSINLFGKFGIDIDAN QRLQLTFNRFDEKQDTDIASDPRVNTIPGRQKARALEGLSLDERPGNENTFINLQYTHDDLFNSKLQAQLYYRDYLTRFF PFDGRSFASLGNEIFQSRVESEKYGGRLQIETPLFNQGAAKLLWGVDYSQEDTSQPVSVFDQAAFVASGGLAFRKTGDRS WTPPLELRSLGLFAQLNWEISDRFVFNGGVRYENADVSVNDFRTLANPNVTIGGGDLNFNATLFNVGAVYALNPQLSVFA NYAQGFSLSDIGLALRNAPPGFSVESLNPEPQKVDNYEIGIRGQWDTVQASLSAFYNESDLGTTFTAPGTVIRAPERIYG LEAAIDAQPSSTWQVGGTFTLIGGEIDSNNDGDYESLDGFRIPPLKLTAYVENETLPGWRNRLQALYSGNREVFGNNNTA FGRRPVESYLTVDYISSIKLGAGTLQLGLENLFNSQYFPVVSQLQANDSAYAAARGRTLSIKYSFDW
Sequences:
>Translated_867_residues MDCVTSHNPVATFRCEVKMKPGKILFLLLLTGSVWSLISHPGKTQEAPSPTQLNTQSPAPNAQELTQVTGVRVVPTVQGL EVILDSTAAEKLQVSTQNQGNSLIADITNAQLNLSEGNTFSQNNPATGVTNVTVVNHNDNTIRVTVTGEKSLPKFELFDS DTGLILAFTATEVAQDSPAEVDEPIELVVTATRTETPIQNVPRSITVIDREQIAAQASTSRNLIEILGKTVPGLAPPAQG ASNFGLTLRGRNPQVLIDGVPQSTTRNASRDLRTIDAAAIERIEVVRGPSAIYGDGATGGVINIITRRPTEEKLTSRTEV GVSAALGNLEGDSFSTNLQHFISAKQGNFDFTFNFAVAKNGGFFDAQGDRIPSDPNAQGGFADASSINLFGKFGIDIDAN QRLQLTFNRFDEKQDTDIASDPRVNTIPGRQKARALEGLSLDERPGNENTFINLQYTHDDLFNSKLQAQLYYRDYLTRFF PFDGRSFASLGNEIFQSRVESEKYGGRLQIETPLFNQGAAKLLWGVDYSQEDTSQPVSVFDQAAFVASGGLAFRKTGDRS WTPPLELRSLGLFAQLNWEISDRFVFNGGVRYENADVSVNDFRTLANPNVTIGGGDLNFNATLFNVGAVYALNPQLSVFA NYAQGFSLSDIGLALRNAPPGFSVESLNPEPQKVDNYEIGIRGQWDTVQASLSAFYNESDLGTTFTAPGTVIRAPERIYG LEAAIDAQPSSTWQVGGTFTLIGGEIDSNNDGDYESLDGFRIPPLKLTAYVENETLPGWRNRLQALYSGNREVFGNNNTA FGRRPVESYLTVDYISSIKLGAGTLQLGLENLFNSQYFPVVSQLQANDSAYAAARGRTLSIKYSFDW >Mature_867_residues MDCVTSHNPVATFRCEVKMKPGKILFLLLLTGSVWSLISHPGKTQEAPSPTQLNTQSPAPNAQELTQVTGVRVVPTVQGL EVILDSTAAEKLQVSTQNQGNSLIADITNAQLNLSEGNTFSQNNPATGVTNVTVVNHNDNTIRVTVTGEKSLPKFELFDS DTGLILAFTATEVAQDSPAEVDEPIELVVTATRTETPIQNVPRSITVIDREQIAAQASTSRNLIEILGKTVPGLAPPAQG ASNFGLTLRGRNPQVLIDGVPQSTTRNASRDLRTIDAAAIERIEVVRGPSAIYGDGATGGVINIITRRPTEEKLTSRTEV GVSAALGNLEGDSFSTNLQHFISAKQGNFDFTFNFAVAKNGGFFDAQGDRIPSDPNAQGGFADASSINLFGKFGIDIDAN QRLQLTFNRFDEKQDTDIASDPRVNTIPGRQKARALEGLSLDERPGNENTFINLQYTHDDLFNSKLQAQLYYRDYLTRFF PFDGRSFASLGNEIFQSRVESEKYGGRLQIETPLFNQGAAKLLWGVDYSQEDTSQPVSVFDQAAFVASGGLAFRKTGDRS WTPPLELRSLGLFAQLNWEISDRFVFNGGVRYENADVSVNDFRTLANPNVTIGGGDLNFNATLFNVGAVYALNPQLSVFA NYAQGFSLSDIGLALRNAPPGFSVESLNPEPQKVDNYEIGIRGQWDTVQASLSAFYNESDLGTTFTAPGTVIRAPERIYG LEAAIDAQPSSTWQVGGTFTLIGGEIDSNNDGDYESLDGFRIPPLKLTAYVENETLPGWRNRLQALYSGNREVFGNNNTA FGRRPVESYLTVDYISSIKLGAGTLQLGLENLFNSQYFPVVSQLQANDSAYAAARGRTLSIKYSFDW
Specific function: Receptor for the siderophore rhizobactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=188, Percent_Identity=35.1063829787234, Blast_Score=82, Evalue=2e-16, Organism=Escherichia coli, GI1790405, Length=151, Percent_Identity=39.7350993377483, Blast_Score=72, Evalue=2e-13, Organism=Escherichia coli, GI1786344, Length=134, Percent_Identity=35.8208955223881, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1786798, Length=226, Percent_Identity=27.8761061946903, Blast_Score=64, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 94334; Mature: 94334
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.2 %Met (Translated Protein) 0.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDCVTSHNPVATFRCEVKMKPGKILFLLLLTGSVWSLISHPGKTQEAPSPTQLNTQSPAP CCCCCCCCCEEEEEEEEEECCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC NAQELTQVTGVRVVPTVQGLEVILDSTAAEKLQVSTQNQGNSLIADITNAQLNLSEGNTF CHHHHHHHCCEEEEECCCCHHHHHCCCCHHEEEEECCCCCCEEEEEECCCEEEECCCCCC SQNNPATGVTNVTVVNHNDNTIRVTVTGEKSLPKFELFDSDTGLILAFTATEVAQDSPAE CCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCEEEECCCCCEEEEEEEHHHCCCCCCC VDEPIELVVTATRTETPIQNVPRSITVIDREQIAAQASTSRNLIEILGKTVPGLAPPAQG CCCCEEEEEEECCCCCCHHHCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC ASNFGLTLRGRNPQVLIDGVPQSTTRNASRDLRTIDAAAIERIEVVRGPSAIYGDGATGG CCCCCEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCEEECCCCCCC VINIITRRPTEEKLTSRTEVGVSAALGNLEGDSFSTNLQHFISAKQGNFDFTFNFAVAKN EEEEEECCCCHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEECC GGFFDAQGDRIPSDPNAQGGFADASSINLFGKFGIDIDANQRLQLTFNRFDEKQDTDIAS CCEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECEEECCCCEEEEEEECCCCCCCCCCCC DPRVNTIPGRQKARALEGLSLDERPGNENTFINLQYTHDDLFNSKLQAQLYYRDYLTRFF CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHCCCHHHEEHHHHHHHHHHC PFDGRSFASLGNEIFQSRVESEKYGGRLQIETPLFNQGAAKLLWGVDYSQEDTSQPVSVF CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCHHHH DQAAFVASGGLAFRKTGDRSWTPPLELRSLGLFAQLNWEISDRFVFNGGVRYENADVSVN HHHHHHCCCCEEEEECCCCCCCCCHHHHHCCEEEEEEEEEEEEEEEECCEEEECCCCCHH DFRTLANPNVTIGGGDLNFNATLFNVGAVYALNPQLSVFANYAQGFSLSDIGLALRNAPP HHHHHCCCCEEEECCCEEEEEEEEECCEEEEECCCCEEHHHHHCCCCCHHHHHEEECCCC GFSVESLNPEPQKVDNYEIGIRGQWDTVQASLSAFYNESDLGTTFTAPGTVIRAPERIYG CCEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCEEECCCCEEECCHHHCC LEAAIDAQPSSTWQVGGTFTLIGGEIDSNNDGDYESLDGFRIPPLKLTAYVENETLPGWR CEEEECCCCCCCEECCCEEEEEECEECCCCCCCHHCCCCCCCCCEEEEEEEECCCCCCHH NRLQALYSGNREVFGNNNTAFGRRPVESYLTVDYISSIKLGAGTLQLGLENLFNSQYFPV HHHHHHHCCCEEEECCCCCCCCCCCHHHHEEHHHHHCEECCCCHHHHHHHHHCCCCCCHH VSQLQANDSAYAAARGRTLSIKYSFDW HHHHHCCCCEEEEECCCEEEEEEECCC >Mature Secondary Structure MDCVTSHNPVATFRCEVKMKPGKILFLLLLTGSVWSLISHPGKTQEAPSPTQLNTQSPAP CCCCCCCCCEEEEEEEEEECCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC NAQELTQVTGVRVVPTVQGLEVILDSTAAEKLQVSTQNQGNSLIADITNAQLNLSEGNTF CHHHHHHHCCEEEEECCCCHHHHHCCCCHHEEEEECCCCCCEEEEEECCCEEEECCCCCC SQNNPATGVTNVTVVNHNDNTIRVTVTGEKSLPKFELFDSDTGLILAFTATEVAQDSPAE CCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCEEEECCCCCEEEEEEEHHHCCCCCCC VDEPIELVVTATRTETPIQNVPRSITVIDREQIAAQASTSRNLIEILGKTVPGLAPPAQG CCCCEEEEEEECCCCCCHHHCCCEEEEEEHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC ASNFGLTLRGRNPQVLIDGVPQSTTRNASRDLRTIDAAAIERIEVVRGPSAIYGDGATGG CCCCCEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHEECCCCEEECCCCCCC VINIITRRPTEEKLTSRTEVGVSAALGNLEGDSFSTNLQHFISAKQGNFDFTFNFAVAKN EEEEEECCCCHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEECC GGFFDAQGDRIPSDPNAQGGFADASSINLFGKFGIDIDANQRLQLTFNRFDEKQDTDIAS CCEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECEEECCCCEEEEEEECCCCCCCCCCCC DPRVNTIPGRQKARALEGLSLDERPGNENTFINLQYTHDDLFNSKLQAQLYYRDYLTRFF CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHCCCHHHEEHHHHHHHHHHC PFDGRSFASLGNEIFQSRVESEKYGGRLQIETPLFNQGAAKLLWGVDYSQEDTSQPVSVF CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCHHHH DQAAFVASGGLAFRKTGDRSWTPPLELRSLGLFAQLNWEISDRFVFNGGVRYENADVSVN HHHHHHCCCCEEEEECCCCCCCCCHHHHHCCEEEEEEEEEEEEEEEECCEEEECCCCCHH DFRTLANPNVTIGGGDLNFNATLFNVGAVYALNPQLSVFANYAQGFSLSDIGLALRNAPP HHHHHCCCCEEEECCCEEEEEEEEECCEEEEECCCCEEHHHHHCCCCCHHHHHEEECCCC GFSVESLNPEPQKVDNYEIGIRGQWDTVQASLSAFYNESDLGTTFTAPGTVIRAPERIYG CCEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCEEECCCCEEECCHHHCC LEAAIDAQPSSTWQVGGTFTLIGGEIDSNNDGDYESLDGFRIPPLKLTAYVENETLPGWR CEEEECCCCCCCEECCCEEEEEECEECCCCCCCHHCCCCCCCCCEEEEEEEECCCCCCHH NRLQALYSGNREVFGNNNTAFGRRPVESYLTVDYISSIKLGAGTLQLGLENLFNSQYFPV HHHHHHHCCCEEEECCCCCCCCCCCHHHHEEHHHHHCEECCCCHHHHHHHHHCCCCCCHH VSQLQANDSAYAAARGRTLSIKYSFDW HHHHHCCCCEEEEECCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11274118; 11481432 [H]