| Definition | Nostoc sp. PCC 7120, complete genome. |
|---|---|
| Accession | NC_003272 |
| Length | 6,413,771 |
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The map label for this gene is 17227800
Identifier: 17227800
GI number: 17227800
Start: 344951
End: 347893
Strand: Direct
Name: 17227800
Synonym: alr0304
Alternate gene names: NA
Gene position: 344951-347893 (Clockwise)
Preceding gene: 17227799
Following gene: 17227804
Centisome position: 5.38
GC content: 44.55
Gene sequence:
>2943_bases GTGCAGATTCGTGATGTCAACAATGTGATTGTTGGCACCGGTTTTGTAGTTTCCCCTACAGGAAAAATCGTCACCTGTTG TCATGTGGTGCGGGATGCAGGGGGACAAGTTGCTGAGGGAGTAGAAATTAATGTCTACTTCCCGAAAGCGATAAAGCCAG AACAGAAAGCACATACAGCTAAAGTTACAGCTTGTTTTTTAGACCATGATGATGATGTGGTTGTGTTGCAACTGGACACG ACTACACTCCCAGATGGGATAGAACCTGCAATTATGGGGATGGCTGAAGGTTCAGCAGGTCACAAATTTCGGAGTTTTGG CTACCGCCGACTACAAAATTACCAAGGACTACCAGCTCATGGTGAAATAGTAGACTTTGCCGAATCACCAGAGACGCTGA TTTTGCATAGCGACCCTGTAATGTTGAATAGCCAGCATATCGACAGTGGTATGAGTGGTTCCGCCGTTCTGGATATCGAA CGCAACTTAGTAGTGGGTGTAATTGCGGAAACTTGGGACTCTGGGGAAAGTGAAAAAGACCGGGACACAAGTTTTGCAGT TGATTGTCGAGTCCTCACTTTTGACCCCATGTGTTTACCATTAGCAGATGCACCACCTACACCCCAGCCTACAATTAACT CAAACCCTACAGGAGAGCAACCAGTGTCTCAACCAGGGATAATCTCGAACCTGAATAATGCACCAGCACCTTTAGAAGAA TGGGTGGGTAGAGTAGATTTTCTCAAAACACTAAATCAGGATTGGGTTGACTCTAATTGCTCAATTGTGGGACTTATTGG TTTTGGAGGGGAAGGTAAAAGTTCCCTCACTCGTCGCTGGCTGGAAGATTTGCTACACGACTCATCTTTACCTCAACCTA CTGGCGTGTTTTGGTGGGGTTTTTATGAAAAAGCTAGTGCAGATGAATTTTTTGAGGCGGCGCTAAGGTTTCTTAATAAC AAAATTGACCCCCGTATATTGACCTCAACTACTATTAAAGTCCAAGTGATATTGGCAATGCTCAACAGTGGTCGCTATCT CTTTATCTTGGATGGATTGGAAGTGCTGCAACAGCAAGAAGGAGATAATTACGGCGAGTTAACTAGCGTAGACTTGCGGG AGTTTTTACGAGAGTTTGCGGCTGGGAGACATGAATCATTTTGTTTAATTAACAGCCGTGCGCCACTGGTAGACTTAATT GATTTCACCACCTACACCCATCGAGATGTAGACCGGCTAACAGTCTATGAGGGAAGAGAATTACTAAAAAAATTTGGAGT CAAAGGTACACATGATCAGTTAAACCGAGTGGTGCAGCAGTGGGATGGTTATGCCTTGGTTTTGAGTCTGTTAGGGTCTT ATCTAGTAGATAATTATGGAGGCAAAATTGAACATATCGTCGGAATTCCAGCACCAACGGCTGATGAACCTCGATATGAG CGAGTGCGGCGAGTGTTGCGACGCTATGACGAAAATCTAACACTAGCAGAAAAGGAATTAATGAAGTGGTTTAGTGCCTT TCGTCTACCAGTACCAGAATCAGCATTACAGCAGATATTTCCACAATTTGGCGCTAGTTTGTCAACTTTCACCCCATCAG AACATATATCGTCATTAAATAGCGACTCCTTGCTGACAATGGTGCAGCGATTGGTAAACTATCGGATTTTGCGACACAAT CAGCAAGAATATTACTACACTATTCATCCCCTCATCCGCGCTCACTATTTGGCAATACTGCACAATGATCGTGAGGAAGC AGTGGTAGTTCATCAACAAATTGCAGATTACTATCTTGAAACGGCTGGGGAAACACCAGAAAACCCAACCTTGGATGATT TAGCACCACTGATTGAAGCTGTGCATCACCTCTGCCAAGGACAAAATTATGATGAAGCGATTAGCTTATTTTGGAAGCGC ATTTACCAAGATGATCACTCTATAATTACCCACAAACTTGGAGCATACGAAACTAACTTAACCTTAATACAAGAGTTTTT TCCCAAAGGCGATACATCCCAAGAACCACAGGTGAGTAACTATAACCATAAACGTTTCATCCTCAACGCAGTTGGTTTAT CTTTGATGTATGTGGGACGTATCGAGAAAGCTCCAACTTTTTATGAGCGTGCTAATGCGATTGCTCTTAACAGACAAGAC TGGGAAAACGCCAGTGCTGGCTATCAAAATCTAGCAGAGCAACACATATATCTCGGCAACCTTTCAGCTAGTACTGATGC TGCCAAAGAAGCATTAAATCTTGCTCATCGCTCTCCAAATAAGAGACATGAGTGTAATTCATTGGCTCTTAAAGGGTGGG CTGTAAACTTGCAGGGTGATAATAAGACAGCAGATAAAGCCTTTCTACAAGCAGAGGCATTGGAACAAAAAATTGACTCA AGTGAGCTTTATCTATACGGCTTAAGGGGTATCTGGCACGCTGATTACCTACTGCGAGTAGGAAGTAGAAACGATGCACG ACAGATGACAGAGGCAAACCTAGAGAGTTGTCAACGCAATAACTGGGTTAATAGTATCAGCAGATGTCACCGTGTGTTGG GCGACCTAGATGCAGATGCTGGACAAAACGAAAATGCCCGCGAACACTATAACGAAGCCCTCAAGATTGCTCGTAGCATT TCTCATCGACCCGTCCTGATTGAAGCGCTACTAGCGCGGGGACGCTGGGCAGCGCGACGGGGTGAAGTTGCGGCGGCGCG TGGTGATTTAGAAGAAGCGCTGAATTATGCCTGTACTGGTGGTTATCGCATTTATGAAGCAGATATCCGGGTTGCTTTGG GGTGGATGCACCTGGCAAACCACAATTACTCAGCAGCGACGGCGGAGGCAAAAAAGGCGCGTTTAATGAGTGATGAGATG GGCTATTATTGGGGTCGCGTTGATGCTGATGAAGTTTTGCAAGCTTTAAAACAGAATTTCTAA
Upstream 100 bases:
>100_bases ATTGCCAAAACTTCGGGAGAAGCCAGCCTCAAGGTAAAGTTACTCTGGGAGCGCAAAGATTCCAATAATGAGCCAGATTC AAAATCTGCGTAACTTTACC
Downstream 100 bases:
>100_bases ATTTTGTTCTGACTTATTTACGAGCAATAGGGTTCGGTTGGTGTGAGTTTGATAGATTTGGAAGAACCCCTCTCCAAACC TCTCCCCGACGCGGGGATAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 980; Mature: 980
Protein sequence:
>980_residues MQIRDVNNVIVGTGFVVSPTGKIVTCCHVVRDAGGQVAEGVEINVYFPKAIKPEQKAHTAKVTACFLDHDDDVVVLQLDT TTLPDGIEPAIMGMAEGSAGHKFRSFGYRRLQNYQGLPAHGEIVDFAESPETLILHSDPVMLNSQHIDSGMSGSAVLDIE RNLVVGVIAETWDSGESEKDRDTSFAVDCRVLTFDPMCLPLADAPPTPQPTINSNPTGEQPVSQPGIISNLNNAPAPLEE WVGRVDFLKTLNQDWVDSNCSIVGLIGFGGEGKSSLTRRWLEDLLHDSSLPQPTGVFWWGFYEKASADEFFEAALRFLNN KIDPRILTSTTIKVQVILAMLNSGRYLFILDGLEVLQQQEGDNYGELTSVDLREFLREFAAGRHESFCLINSRAPLVDLI DFTTYTHRDVDRLTVYEGRELLKKFGVKGTHDQLNRVVQQWDGYALVLSLLGSYLVDNYGGKIEHIVGIPAPTADEPRYE RVRRVLRRYDENLTLAEKELMKWFSAFRLPVPESALQQIFPQFGASLSTFTPSEHISSLNSDSLLTMVQRLVNYRILRHN QQEYYYTIHPLIRAHYLAILHNDREEAVVVHQQIADYYLETAGETPENPTLDDLAPLIEAVHHLCQGQNYDEAISLFWKR IYQDDHSIITHKLGAYETNLTLIQEFFPKGDTSQEPQVSNYNHKRFILNAVGLSLMYVGRIEKAPTFYERANAIALNRQD WENASAGYQNLAEQHIYLGNLSASTDAAKEALNLAHRSPNKRHECNSLALKGWAVNLQGDNKTADKAFLQAEALEQKIDS SELYLYGLRGIWHADYLLRVGSRNDARQMTEANLESCQRNNWVNSISRCHRVLGDLDADAGQNENAREHYNEALKIARSI SHRPVLIEALLARGRWAARRGEVAAARGDLEEALNYACTGGYRIYEADIRVALGWMHLANHNYSAATAEAKKARLMSDEM GYYWGRVDADEVLQALKQNF
Sequences:
>Translated_980_residues MQIRDVNNVIVGTGFVVSPTGKIVTCCHVVRDAGGQVAEGVEINVYFPKAIKPEQKAHTAKVTACFLDHDDDVVVLQLDT TTLPDGIEPAIMGMAEGSAGHKFRSFGYRRLQNYQGLPAHGEIVDFAESPETLILHSDPVMLNSQHIDSGMSGSAVLDIE RNLVVGVIAETWDSGESEKDRDTSFAVDCRVLTFDPMCLPLADAPPTPQPTINSNPTGEQPVSQPGIISNLNNAPAPLEE WVGRVDFLKTLNQDWVDSNCSIVGLIGFGGEGKSSLTRRWLEDLLHDSSLPQPTGVFWWGFYEKASADEFFEAALRFLNN KIDPRILTSTTIKVQVILAMLNSGRYLFILDGLEVLQQQEGDNYGELTSVDLREFLREFAAGRHESFCLINSRAPLVDLI DFTTYTHRDVDRLTVYEGRELLKKFGVKGTHDQLNRVVQQWDGYALVLSLLGSYLVDNYGGKIEHIVGIPAPTADEPRYE RVRRVLRRYDENLTLAEKELMKWFSAFRLPVPESALQQIFPQFGASLSTFTPSEHISSLNSDSLLTMVQRLVNYRILRHN QQEYYYTIHPLIRAHYLAILHNDREEAVVVHQQIADYYLETAGETPENPTLDDLAPLIEAVHHLCQGQNYDEAISLFWKR IYQDDHSIITHKLGAYETNLTLIQEFFPKGDTSQEPQVSNYNHKRFILNAVGLSLMYVGRIEKAPTFYERANAIALNRQD WENASAGYQNLAEQHIYLGNLSASTDAAKEALNLAHRSPNKRHECNSLALKGWAVNLQGDNKTADKAFLQAEALEQKIDS SELYLYGLRGIWHADYLLRVGSRNDARQMTEANLESCQRNNWVNSISRCHRVLGDLDADAGQNENAREHYNEALKIARSI SHRPVLIEALLARGRWAARRGEVAAARGDLEEALNYACTGGYRIYEADIRVALGWMHLANHNYSAATAEAKKARLMSDEM GYYWGRVDADEVLQALKQNF >Mature_980_residues MQIRDVNNVIVGTGFVVSPTGKIVTCCHVVRDAGGQVAEGVEINVYFPKAIKPEQKAHTAKVTACFLDHDDDVVVLQLDT TTLPDGIEPAIMGMAEGSAGHKFRSFGYRRLQNYQGLPAHGEIVDFAESPETLILHSDPVMLNSQHIDSGMSGSAVLDIE RNLVVGVIAETWDSGESEKDRDTSFAVDCRVLTFDPMCLPLADAPPTPQPTINSNPTGEQPVSQPGIISNLNNAPAPLEE WVGRVDFLKTLNQDWVDSNCSIVGLIGFGGEGKSSLTRRWLEDLLHDSSLPQPTGVFWWGFYEKASADEFFEAALRFLNN KIDPRILTSTTIKVQVILAMLNSGRYLFILDGLEVLQQQEGDNYGELTSVDLREFLREFAAGRHESFCLINSRAPLVDLI DFTTYTHRDVDRLTVYEGRELLKKFGVKGTHDQLNRVVQQWDGYALVLSLLGSYLVDNYGGKIEHIVGIPAPTADEPRYE RVRRVLRRYDENLTLAEKELMKWFSAFRLPVPESALQQIFPQFGASLSTFTPSEHISSLNSDSLLTMVQRLVNYRILRHN QQEYYYTIHPLIRAHYLAILHNDREEAVVVHQQIADYYLETAGETPENPTLDDLAPLIEAVHHLCQGQNYDEAISLFWKR IYQDDHSIITHKLGAYETNLTLIQEFFPKGDTSQEPQVSNYNHKRFILNAVGLSLMYVGRIEKAPTFYERANAIALNRQD WENASAGYQNLAEQHIYLGNLSASTDAAKEALNLAHRSPNKRHECNSLALKGWAVNLQGDNKTADKAFLQAEALEQKIDS SELYLYGLRGIWHADYLLRVGSRNDARQMTEANLESCQRNNWVNSISRCHRVLGDLDADAGQNENAREHYNEALKIARSI SHRPVLIEALLARGRWAARRGEVAAARGDLEEALNYACTGGYRIYEADIRVALGWMHLANHNYSAATAEAKKARLMSDEM GYYWGRVDADEVLQALKQNF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 15 WD repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000767 - InterPro: IPR020472 - InterPro: IPR002182 - InterPro: IPR015943 - InterPro: IPR001680 - InterPro: IPR011046 - InterPro: IPR019782 - InterPro: IPR019775 - InterPro: IPR017986 - InterPro: IPR019781 [H]
Pfam domain/function: PF00931 NB-ARC; PF00400 WD40 [H]
EC number: NA
Molecular weight: Translated: 110141; Mature: 110141
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQIRDVNNVIVGTGFVVSPTGKIVTCCHVVRDAGGQVAEGVEINVYFPKAIKPEQKAHTA CCCCCCCCEEEECCEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHE KVTACFLDHDDDVVVLQLDTTTLPDGIEPAIMGMAEGSAGHKFRSFGYRRLQNYQGLPAH EEEEEEECCCCCEEEEEEECCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCC GEIVDFAESPETLILHSDPVMLNSQHIDSGMSGSAVLDIERNLVVGVIAETWDSGESEKD CCEEECCCCCCEEEEECCCCEEECHHCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCC RDTSFAVDCRVLTFDPMCLPLADAPPTPQPTINSNPTGEQPVSQPGIISNLNNAPAPLEE CCCCEEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH WVGRVDFLKTLNQDWVDSNCSIVGLIGFGGEGKSSLTRRWLEDLLHDSSLPQPTGVFWWG HHHHHHHHHHHCHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEE FYEKASADEFFEAALRFLNNKIDPRILTSTTIKVQVILAMLNSGRYLFILDGLEVLQQQE CCCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEECCHHHHHHHC GDNYGELTSVDLREFLREFAAGRHESFCLINSRAPLVDLIDFTTYTHRDVDRLTVYEGRE CCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCEEHHHHHHHHCCCCCHHHHHHHHHH LLKKFGVKGTHDQLNRVVQQWDGYALVLSLLGSYLVDNYGGKIEHIVGIPAPTADEPRYE HHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHH RVRRVLRRYDENLTLAEKELMKWFSAFRLPVPESALQQIFPQFGASLSTFTPSEHISSLN HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHCCC SDSLLTMVQRLVNYRILRHNQQEYYYTIHPLIRAHYLAILHNDREEAVVVHQQIADYYLE CCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH TAGETPENPTLDDLAPLIEAVHHLCQGQNYDEAISLFWKRIYQDDHSIITHKLGAYETNL HCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHH TLIQEFFPKGDTSQEPQVSNYNHKRFILNAVGLSLMYVGRIEKAPTFYERANAIALNRQD HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEECCCC WENASAGYQNLAEQHIYLGNLSASTDAAKEALNLAHRSPNKRHECNSLALKGWAVNLQGD CCCHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC NKTADKAFLQAEALEQKIDSSELYLYGLRGIWHADYLLRVGSRNDARQMTEANLESCQRN CCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHEECCCCHHHHHHHHHHHHHHHC NWVNSISRCHRVLGDLDADAGQNENAREHYNEALKIARSISHRPVLIEALLARGRWAARR CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHC GEVAAARGDLEEALNYACTGGYRIYEADIRVALGWMHLANHNYSAATAEAKKARLMSDEM CCHHHHHCCHHHHHHHHCCCCEEEEEECEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHC GYYWGRVDADEVLQALKQNF CCEECCCCHHHHHHHHHHCC >Mature Secondary Structure MQIRDVNNVIVGTGFVVSPTGKIVTCCHVVRDAGGQVAEGVEINVYFPKAIKPEQKAHTA CCCCCCCCEEEECCEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHE KVTACFLDHDDDVVVLQLDTTTLPDGIEPAIMGMAEGSAGHKFRSFGYRRLQNYQGLPAH EEEEEEECCCCCEEEEEEECCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCC GEIVDFAESPETLILHSDPVMLNSQHIDSGMSGSAVLDIERNLVVGVIAETWDSGESEKD CCEEECCCCCCEEEEECCCCEEECHHCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCC RDTSFAVDCRVLTFDPMCLPLADAPPTPQPTINSNPTGEQPVSQPGIISNLNNAPAPLEE CCCCEEEEEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH WVGRVDFLKTLNQDWVDSNCSIVGLIGFGGEGKSSLTRRWLEDLLHDSSLPQPTGVFWWG HHHHHHHHHHHCHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEE FYEKASADEFFEAALRFLNNKIDPRILTSTTIKVQVILAMLNSGRYLFILDGLEVLQQQE CCCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEECCHHHHHHHC GDNYGELTSVDLREFLREFAAGRHESFCLINSRAPLVDLIDFTTYTHRDVDRLTVYEGRE CCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCEEHHHHHHHHCCCCCHHHHHHHHHH LLKKFGVKGTHDQLNRVVQQWDGYALVLSLLGSYLVDNYGGKIEHIVGIPAPTADEPRYE HHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHH RVRRVLRRYDENLTLAEKELMKWFSAFRLPVPESALQQIFPQFGASLSTFTPSEHISSLN HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHCCC SDSLLTMVQRLVNYRILRHNQQEYYYTIHPLIRAHYLAILHNDREEAVVVHQQIADYYLE CCHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH TAGETPENPTLDDLAPLIEAVHHLCQGQNYDEAISLFWKRIYQDDHSIITHKLGAYETNL HCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHH TLIQEFFPKGDTSQEPQVSNYNHKRFILNAVGLSLMYVGRIEKAPTFYERANAIALNRQD HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEECCCC WENASAGYQNLAEQHIYLGNLSASTDAAKEALNLAHRSPNKRHECNSLALKGWAVNLQGD CCCHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCC NKTADKAFLQAEALEQKIDSSELYLYGLRGIWHADYLLRVGSRNDARQMTEANLESCQRN CCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHEECCCCHHHHHHHHHHHHHHHC NWVNSISRCHRVLGDLDADAGQNENAREHYNEALKIARSISHRPVLIEALLARGRWAARR CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHC GEVAAARGDLEEALNYACTGGYRIYEADIRVALGWMHLANHNYSAATAEAKKARLMSDEM CCHHHHHCCHHHHHHHHCCCCEEEEEECEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHC GYYWGRVDADEVLQALKQNF CCEECCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]