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The map label for this gene is rbfA [H]

Identifier: 17227559

GI number: 17227559

Start: 68534

End: 68935

Strand: Direct

Name: rbfA [H]

Synonym: alr0063

Alternate gene names: 17227559

Gene position: 68534-68935 (Clockwise)

Preceding gene: 17227558

Following gene: 17227560

Centisome position: 1.07

GC content: 44.28

Gene sequence:

>402_bases
ATGGCTACAAATCGCCGCGTCTCCCGTGTTGCTGAATTGATCAAACGGGAAGTTAGCCAAATGCTAATTAACGGTATTAA
AGATGATCGTGTGGGTACAGGCATGGTCAGTGTCACAGATGTAGATGTTTCTGGGGATCTGCAACACGCCAAAATCTACG
TCAGTATATATGGTACAGAAGAAGCTAAAGCAGAAACAATGGCGGGGTTGAAATCAGCCACTGGTTTTGTCCGTAGTGAA
CTAGGGGCAAGGGTAAGGTTACGTCGTACTCCCGAAGTGACTTTCATCGAAGATCGTTCAATAGAACGCGGAACAAAAGT
ACTAACTTTGTTGAACAAACTTGAGAATGCGCGATCACCTGATGATATACCATCAGCAGATGACTCTTTAGACGAAGATT
AG

Upstream 100 bases:

>100_bases
TGTAGGCGGATTTTTCTTGAGGGTGTTCCCCATAGTTTTGCTGTCCTATCTAACTGAAATTTATGTTGTTGTCCAACCTC
TGTGAGGAGGGAAAGTTTTT

Downstream 100 bases:

>100_bases
GCATAATTTTTTGTGGGATTGGGGATTGAGAGAAAGCAGGAGACATGGAGCCACCAGCAATCACTCTCAGCGTTCTTCAC
TTCCCTGTAGCCTCAATCAC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MATNRRVSRVAELIKREVSQMLINGIKDDRVGTGMVSVTDVDVSGDLQHAKIYVSIYGTEEAKAETMAGLKSATGFVRSE
LGARVRLRRTPEVTFIEDRSIERGTKVLTLLNKLENARSPDDIPSADDSLDED

Sequences:

>Translated_133_residues
MATNRRVSRVAELIKREVSQMLINGIKDDRVGTGMVSVTDVDVSGDLQHAKIYVSIYGTEEAKAETMAGLKSATGFVRSE
LGARVRLRRTPEVTFIEDRSIERGTKVLTLLNKLENARSPDDIPSADDSLDED
>Mature_132_residues
ATNRRVSRVAELIKREVSQMLINGIKDDRVGTGMVSVTDVDVSGDLQHAKIYVSIYGTEEAKAETMAGLKSATGFVRSEL
GARVRLRRTPEVTFIEDRSIERGTKVLTLLNKLENARSPDDIPSADDSLDED

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=124, Percent_Identity=37.0967741935484, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 14666; Mature: 14535

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATNRRVSRVAELIKREVSQMLINGIKDDRVGTGMVSVTDVDVSGDLQHAKIYVSIYGTE
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCC
EAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVLTLLNKLENARSP
HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCCCC
DDIPSADDSLDED
CCCCCCCCCCCCC
>Mature Secondary Structure 
ATNRRVSRVAELIKREVSQMLINGIKDDRVGTGMVSVTDVDVSGDLQHAKIYVSIYGTE
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCC
EAKAETMAGLKSATGFVRSELGARVRLRRTPEVTFIEDRSIERGTKVLTLLNKLENARSP
HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCCCC
DDIPSADDSLDED
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA