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The map label for this gene is rdoA [H]

Identifier: 172087785

GI number: 172087785

Start: 2873052

End: 2874041

Strand: Direct

Name: rdoA [H]

Synonym: VF_2552

Alternate gene names: 172087785

Gene position: 2873052-2874041 (Clockwise)

Preceding gene: 59713158

Following gene: 59713160

Centisome position: 99.16

GC content: 40.61

Gene sequence:

>990_bases
ATGACTATGTCTGAACACGCTTTTAATTTCAGTACGCTTACCCCTGATTTACTCTGGAATGCTCTTGCTGATATCGGCAT
TAGAGCAGAGTCAGGTTTTCTTGCTTTAAACAGTTATGAAAACCGTGTCTATCAATTTACCGACGAAGAACGACGTCGTT
ATGTTGTGAAGTTTTATCGCCCACAACGTTGGTCTGAAGCTCAAATACTTGAAGAACACTTATTTGCTCGACAACTTGTT
CAACAAGATATTCCAATCGCTGCTCCATTGGAAATTAACGGCAAAACCCTACACTCAGCCAATGGTTATTGGTTTGCACT
TTTTGATAGCTTAGGAGGCCGCACATTTGAGGTCGATAATTTTGATCAATTAGAGTGGGTGGGACGCTTTTTAGGCCGCA
TTCATAAAGTAGGGGAATCCGAGTTATTTCAACATCGTCCAACAATAGGGCTAGATGAGTACTTGTATCAACCAAGAAAA
CTATTAGAAAACAGCTCGTTTATCCCGACACATTTAGAAAATAGCTTTTTCTCTGATATGGATATGTTGATTCAACAAAT
CGAACAACACTGGCAACCAAGTAAATCCATTCGACTGCACGGTGATTGTCACCCTAGCAATATTTTATGGCGTGATGGTC
CATTATTTGTTGATTTAGATGACGCCAGAAATGGCCCAGCCGCACAAGATATCTGGATGCTGTTAAATGGTGATCGCCAA
GATAAGCTTGTTCAGTTAGATATTTTGTTGGAATCTTATTCTGAGTTTTGCGATTTTGACCACAACCAGTTGAAACTAAT
TGAACCTTTACGTGGTCTACGAATGGTGCACTACATGGCATGGCTTGCAAAACGTTGGCAAGATCCTGCTTTTCCTATTG
CATTTCCATGGTTTGCCGACGCAAAATACTGGGAAAGTCAGGTTCTCGGATTTAAAGAACAAATAGCCGCATTAAACGAT
GCACCTTTAGAACTGATGCCACAATGGTAA

Upstream 100 bases:

>100_bases
CTGATGGCCAAGTGATAAAAGCTGAAAGTCGATTCTTTAAAAAGCTATAATCACTTTATTACTGACACAAAAGGCTCGTA
ATGAGCCTTTTTTATTGAGA

Downstream 100 bases:

>100_bases
AATATAATACTAATCACAAATGGATTGGAGAGAGTTACACATGATGAAGAAAATGATGGCACTGTTTGGTGCTTTAGTAC
TGAGTTTTTCAGTAAATGCA

Product: serine/threonine protein kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MTMSEHAFNFSTLTPDLLWNALADIGIRAESGFLALNSYENRVYQFTDEERRRYVVKFYRPQRWSEAQILEEHLFARQLV
QQDIPIAAPLEINGKTLHSANGYWFALFDSLGGRTFEVDNFDQLEWVGRFLGRIHKVGESELFQHRPTIGLDEYLYQPRK
LLENSSFIPTHLENSFFSDMDMLIQQIEQHWQPSKSIRLHGDCHPSNILWRDGPLFVDLDDARNGPAAQDIWMLLNGDRQ
DKLVQLDILLESYSEFCDFDHNQLKLIEPLRGLRMVHYMAWLAKRWQDPAFPIAFPWFADAKYWESQVLGFKEQIAALND
APLELMPQW

Sequences:

>Translated_329_residues
MTMSEHAFNFSTLTPDLLWNALADIGIRAESGFLALNSYENRVYQFTDEERRRYVVKFYRPQRWSEAQILEEHLFARQLV
QQDIPIAAPLEINGKTLHSANGYWFALFDSLGGRTFEVDNFDQLEWVGRFLGRIHKVGESELFQHRPTIGLDEYLYQPRK
LLENSSFIPTHLENSFFSDMDMLIQQIEQHWQPSKSIRLHGDCHPSNILWRDGPLFVDLDDARNGPAAQDIWMLLNGDRQ
DKLVQLDILLESYSEFCDFDHNQLKLIEPLRGLRMVHYMAWLAKRWQDPAFPIAFPWFADAKYWESQVLGFKEQIAALND
APLELMPQW
>Mature_328_residues
TMSEHAFNFSTLTPDLLWNALADIGIRAESGFLALNSYENRVYQFTDEERRRYVVKFYRPQRWSEAQILEEHLFARQLVQ
QDIPIAAPLEINGKTLHSANGYWFALFDSLGGRTFEVDNFDQLEWVGRFLGRIHKVGESELFQHRPTIGLDEYLYQPRKL
LENSSFIPTHLENSFFSDMDMLIQQIEQHWQPSKSIRLHGDCHPSNILWRDGPLFVDLDDARNGPAAQDIWMLLNGDRQD
KLVQLDILLESYSEFCDFDHNQLKLIEPLRGLRMVHYMAWLAKRWQDPAFPIAFPWFADAKYWESQVLGFKEQIAALNDA
PLELMPQW

Specific function: Probably involved in the extracytoplasmic stress response [H]

COG id: COG2334

COG function: function code R; Putative homoserine kinase type II (protein kinase fold)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdoA family [H]

Homologues:

Organism=Escherichia coli, GI1790290, Length=328, Percent_Identity=56.4024390243902, Blast_Score=406, Evalue=1e-115,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002575
- InterPro:   IPR011009 [H]

Pfam domain/function: PF01636 APH [H]

EC number: NA

Molecular weight: Translated: 38654; Mature: 38523

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMSEHAFNFSTLTPDLLWNALADIGIRAESGFLALNSYENRVYQFTDEERRRYVVKFYR
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCEEECCCHHHHHEEHHEEC
PQRWSEAQILEEHLFARQLVQQDIPIAAPLEINGKTLHSANGYWFALFDSLGGRTFEVDN
CCCCCHHHHHHHHHHHHHHHHHCCCEECCEEECCCEEECCCCEEEEEEECCCCCEEECCC
FDQLEWVGRFLGRIHKVGESELFQHRPTIGLDEYLYQPRKLLENSSFIPTHLENSFFSDM
CHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
DMLIQQIEQHWQPSKSIRLHGDCHPSNILWRDGPLFVDLDDARNGPAAQDIWMLLNGDRQ
HHHHHHHHHHCCCCCCEEEECCCCCCCEEECCCCEEEEECCCCCCCCHHHEEEEECCCCC
DKLVQLDILLESYSEFCDFDHNQLKLIEPLRGLRMVHYMAWLAKRWQDPAFPIAFPWFAD
CCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCC
AKYWESQVLGFKEQIAALNDAPLELMPQW
HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TMSEHAFNFSTLTPDLLWNALADIGIRAESGFLALNSYENRVYQFTDEERRRYVVKFYR
CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCEEECCCHHHHHEEHHEEC
PQRWSEAQILEEHLFARQLVQQDIPIAAPLEINGKTLHSANGYWFALFDSLGGRTFEVDN
CCCCCHHHHHHHHHHHHHHHHHCCCEECCEEECCCEEECCCCEEEEEEECCCCCEEECCC
FDQLEWVGRFLGRIHKVGESELFQHRPTIGLDEYLYQPRKLLENSSFIPTHLENSFFSDM
CHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
DMLIQQIEQHWQPSKSIRLHGDCHPSNILWRDGPLFVDLDDARNGPAAQDIWMLLNGDRQ
HHHHHHHHHHCCCCCCEEEECCCCCCCEEECCCCEEEEECCCCCCCCHHHEEEEECCCCC
DKLVQLDILLESYSEFCDFDHNQLKLIEPLRGLRMVHYMAWLAKRWQDPAFPIAFPWFAD
CCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCC
AKYWESQVLGFKEQIAALNDAPLELMPQW
HHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]