| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170757766
Identifier: 170757766
GI number: 170757766
Start: 2791917
End: 2793062
Strand: Reverse
Name: 170757766
Synonym: CLD_1953
Alternate gene names: NA
Gene position: 2793062-2791917 (Counterclockwise)
Preceding gene: 170754776
Following gene: 170756925
Centisome position: 70.56
GC content: 29.76
Gene sequence:
>1146_bases ATGGATAAAAAAAGTTTTTATATAAAAGATGAAAAAAGAAAAAAACATATAAAAGACATAAAAGAAAAATGCATAGAGTG TGATCTATGTGTTAAAAATTGTTCTATGTTAAAAGAATTTGGAGGTAATCCTAAAAAAATATTTGGTAAGATACTTGAAG AGAGGAATTTTGAAGCTATACTCCCTTATTCCTGCGCTATTTGTGGAAAATGTAGAGAAGTTTGTCCTAAGGATTTAAAT ATGGCAAAAGCTTTTATGGATCTTAGAGTGGAAACTGTAGAGCAAAATAATGGGAAAGCTCCTTTAAAAGAGCATAACTC TGTACATATGCATCAAAAATTAGGATTCTCAAAATTATTTACAAAGTATGTGGGAGATAAAAATATAGAAACTAATAAGG TAGAGAGAGTATTTTTCCCTGGTTGTACACTTCCAGCCTATAGTCCAGAATTGGTTTTTAAAATATATGAATATTTTAAA AAAAAGCTACCAGGTACCTCTATGATTTTAGAATGTTGTGGAAAACCAACAGAAACTTTAGGGGAAGAGGAGAAATTTAA TAAATTATTTAGCAGTGTAGAAAAACATATAAGGGATACTGGAGCAGTTGAAGTAATAACTGCTTGTCAAAATTGTTATA TGATAATGAAAAATTATAGTAAATATATAAAGGTTAAATCCCTTTGGACAGTTTTAGAAGAGATAGGTTTACCAGAAAAC GTTGTAAATAAGGGAGCGCATAGCAAAGTTAAGTTTTCTATTCACGATTCTTGTGCTACAAGATATGAAAAAGAAATACA AAGCAGCATAAGATGGATTATGAAAGAATTAGGATATGAAATTTTAGAAGGAGATAATACAAAAAATAGGACTAATTGTT GTGGTACAGGAGGAATGATTCATGCAGTAAACTCTAAGGTATCTAATGCTATGATGAGGGAAGCTGCAAAGAATATAGGA CAAGATTATATAATTACTTATTGTGCAGGCTGTAGAGAATCTATGATTAAAGGGGGAGCTAAATCACTGCATATATTAGA CTTAATCTTTGGAGAGAAAATAGTTAACCAGCATAAGGATATAAAAATAACTTCTCCTTTAAAATCTTGGAGTAATAGAC TAAAAACAAAGAGAATGATAAAGTAA
Upstream 100 bases:
>100_bases AAAATCCAGATAGAGATATAAAAAATATGGATACCTATGAAAAGATAAAAGAGTATTTAGAATTGGATTTTATGAGCAAT CTATTAAGTAGGTGGTTTTA
Downstream 100 bases:
>100_bases AATTTAATAATTACTGTTGAGCTTTTATTATATTTTACATTTTCCTTTAAATAAAGATTACAATTGGGAAGTGTAGTATA AAATAAAAATTTTAATGGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 381; Mature: 381
Protein sequence:
>381_residues MDKKSFYIKDEKRKKHIKDIKEKCIECDLCVKNCSMLKEFGGNPKKIFGKILEERNFEAILPYSCAICGKCREVCPKDLN MAKAFMDLRVETVEQNNGKAPLKEHNSVHMHQKLGFSKLFTKYVGDKNIETNKVERVFFPGCTLPAYSPELVFKIYEYFK KKLPGTSMILECCGKPTETLGEEEKFNKLFSSVEKHIRDTGAVEVITACQNCYMIMKNYSKYIKVKSLWTVLEEIGLPEN VVNKGAHSKVKFSIHDSCATRYEKEIQSSIRWIMKELGYEILEGDNTKNRTNCCGTGGMIHAVNSKVSNAMMREAAKNIG QDYIITYCAGCRESMIKGGAKSLHILDLIFGEKIVNQHKDIKITSPLKSWSNRLKTKRMIK
Sequences:
>Translated_381_residues MDKKSFYIKDEKRKKHIKDIKEKCIECDLCVKNCSMLKEFGGNPKKIFGKILEERNFEAILPYSCAICGKCREVCPKDLN MAKAFMDLRVETVEQNNGKAPLKEHNSVHMHQKLGFSKLFTKYVGDKNIETNKVERVFFPGCTLPAYSPELVFKIYEYFK KKLPGTSMILECCGKPTETLGEEEKFNKLFSSVEKHIRDTGAVEVITACQNCYMIMKNYSKYIKVKSLWTVLEEIGLPEN VVNKGAHSKVKFSIHDSCATRYEKEIQSSIRWIMKELGYEILEGDNTKNRTNCCGTGGMIHAVNSKVSNAMMREAAKNIG QDYIITYCAGCRESMIKGGAKSLHILDLIFGEKIVNQHKDIKITSPLKSWSNRLKTKRMIK >Mature_381_residues MDKKSFYIKDEKRKKHIKDIKEKCIECDLCVKNCSMLKEFGGNPKKIFGKILEERNFEAILPYSCAICGKCREVCPKDLN MAKAFMDLRVETVEQNNGKAPLKEHNSVHMHQKLGFSKLFTKYVGDKNIETNKVERVFFPGCTLPAYSPELVFKIYEYFK KKLPGTSMILECCGKPTETLGEEEKFNKLFSSVEKHIRDTGAVEVITACQNCYMIMKNYSKYIKVKSLWTVLEEIGLPEN VVNKGAHSKVKFSIHDSCATRYEKEIQSSIRWIMKELGYEILEGDNTKNRTNCCGTGGMIHAVNSKVSNAMMREAAKNIG QDYIITYCAGCRESMIKGGAKSLHILDLIFGEKIVNQHKDIKITSPLKSWSNRLKTKRMIK
Specific function: Unknown
COG id: COG0247
COG function: function code C; Fe-S oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006058 - InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR012675 - InterPro: IPR004017 - InterPro: IPR001041 - InterPro: IPR012285 - InterPro: IPR009051 - InterPro: IPR004489 [H]
Pfam domain/function: PF02754 CCG; PF00111 Fer2 [H]
EC number: NA
Molecular weight: Translated: 43560; Mature: 43560
Theoretical pI: Translated: 9.32; Mature: 9.32
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.7 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 8.4 %Cys+Met (Translated Protein) 4.7 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 8.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKKSFYIKDEKRKKHIKDIKEKCIECDLCVKNCSMLKEFGGNPKKIFGKILEERNFEAI CCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEE LPYSCAICGKCREVCPKDLNMAKAFMDLRVETVEQNNGKAPLKEHNSVHMHQKLGFSKLF CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHCHHHHH TKYVGDKNIETNKVERVFFPGCTLPAYSPELVFKIYEYFKKKLPGTSMILECCGKPTETL HHHHCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHC GEEEKFNKLFSSVEKHIRDTGAVEVITACQNCYMIMKNYSKYIKVKSLWTVLEEIGLPEN CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH VVNKGAHSKVKFSIHDSCATRYEKEIQSSIRWIMKELGYEILEGDNTKNRTNCCGTGGMI HHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCH HAVNSKVSNAMMREAAKNIGQDYIITYCAGCRESMIKGGAKSLHILDLIFGEKIVNQHKD HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC IKITSPLKSWSNRLKTKRMIK EEEECHHHHHHHHHHHHHCCC >Mature Secondary Structure MDKKSFYIKDEKRKKHIKDIKEKCIECDLCVKNCSMLKEFGGNPKKIFGKILEERNFEAI CCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEE LPYSCAICGKCREVCPKDLNMAKAFMDLRVETVEQNNGKAPLKEHNSVHMHQKLGFSKLF CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHCHHHHH TKYVGDKNIETNKVERVFFPGCTLPAYSPELVFKIYEYFKKKLPGTSMILECCGKPTETL HHHHCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHC GEEEKFNKLFSSVEKHIRDTGAVEVITACQNCYMIMKNYSKYIKVKSLWTVLEEIGLPEN CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH VVNKGAHSKVKFSIHDSCATRYEKEIQSSIRWIMKELGYEILEGDNTKNRTNCCGTGGMI HHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCH HAVNSKVSNAMMREAAKNIGQDYIITYCAGCRESMIKGGAKSLHILDLIFGEKIVNQHKD HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC IKITSPLKSWSNRLKTKRMIK EEEECHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA