| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170757597
Identifier: 170757597
GI number: 170757597
Start: 1524421
End: 1524933
Strand: Direct
Name: 170757597
Synonym: CLD_3177
Alternate gene names: NA
Gene position: 1524421-1524933 (Clockwise)
Preceding gene: 170756723
Following gene: 170755049
Centisome position: 38.51
GC content: 25.73
Gene sequence:
>513_bases ATGACTAAAGGTATAAGGCTACTCATACTTTTTGTATTAGTAAGTATAATAGTAGCATATTCTTGTACCTCTGTGATTAT GGATGATAAAAAGGAATCAGAGAAGGTATTTAAAGAGTATATAAATTTATTATATACCGTTAAACCTAAAAGCGAGTCAA ATAGAAATATGACTTTACAACAGGTGCATACAGAAAATATTTTTCAAGATGTAATGACAGAAAATGCTTATAATAGTTTA TGGAAAGATCAGATTCCCTTAGTATTATCACTTATAGTTAATAGAAATAACTATGATATAAAGGTTAATAATATAGATAT AGAAAATTACCATAAAAATAAGGATGGAACAACTACCTATACTTATAATGTTCACTTAAATATATTTTCTCCTTTAGATA AAAGGCATAGGGAAGAAAAATTGAGGGGAAGGGCCACTTTAAAGAAAATTAAATTTAAATGGAAAATCGTAAAAGATAAG CAGTTTAATTTAGAGAAGATTTTTTTAAAATAA
Upstream 100 bases:
>100_bases TACAATAATTAATATTCAAATAAAAATCTAATTAATATTATTAGATAATTAATTTCATAAATTGGATTATTTGTTTTATA AGTATTTGGGAGGAATTTGT
Downstream 100 bases:
>100_bases TAGGTTTAATGATTCTCTAATATAGATAATATTTATTAGAAGATTATTTAAAGTTATGTAAAATTATAAAGTTTAAAAAA GTTATTTATTAATTTATAAA
Product: putative lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 170; Mature: 169
Protein sequence:
>170_residues MTKGIRLLILFVLVSIIVAYSCTSVIMDDKKESEKVFKEYINLLYTVKPKSESNRNMTLQQVHTENIFQDVMTENAYNSL WKDQIPLVLSLIVNRNNYDIKVNNIDIENYHKNKDGTTTYTYNVHLNIFSPLDKRHREEKLRGRATLKKIKFKWKIVKDK QFNLEKIFLK
Sequences:
>Translated_170_residues MTKGIRLLILFVLVSIIVAYSCTSVIMDDKKESEKVFKEYINLLYTVKPKSESNRNMTLQQVHTENIFQDVMTENAYNSL WKDQIPLVLSLIVNRNNYDIKVNNIDIENYHKNKDGTTTYTYNVHLNIFSPLDKRHREEKLRGRATLKKIKFKWKIVKDK QFNLEKIFLK >Mature_169_residues TKGIRLLILFVLVSIIVAYSCTSVIMDDKKESEKVFKEYINLLYTVKPKSESNRNMTLQQVHTENIFQDVMTENAYNSLW KDQIPLVLSLIVNRNNYDIKVNNIDIENYHKNKDGTTTYTYNVHLNIFSPLDKRHREEKLRGRATLKKIKFKWKIVKDKQ FNLEKIFLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20204; Mature: 20073
Theoretical pI: Translated: 10.13; Mature: 10.13
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKGIRLLILFVLVSIIVAYSCTSVIMDDKKESEKVFKEYINLLYTVKPKSESNRNMTLQ CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEECCCCCCCCCCHHH QVHTENIFQDVMTENAYNSLWKDQIPLVLSLIVNRNNYDIKVNNIDIENYHKNKDGTTTY HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCEEE TYNVHLNIFSPLDKRHREEKLRGRATLKKIKFKWKIVKDKQFNLEKIFLK EEEEEEEEECCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCEEEECC >Mature Secondary Structure TKGIRLLILFVLVSIIVAYSCTSVIMDDKKESEKVFKEYINLLYTVKPKSESNRNMTLQ CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEECCCCCCCCCCHHH QVHTENIFQDVMTENAYNSLWKDQIPLVLSLIVNRNNYDIKVNNIDIENYHKNKDGTTTY HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCEEE TYNVHLNIFSPLDKRHREEKLRGRATLKKIKFKWKIVKDKQFNLEKIFLK EEEEEEEEECCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA