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The map label for this gene is rfbE [H]

Identifier: 170757404

GI number: 170757404

Start: 3351430

End: 3352737

Strand: Reverse

Name: rfbE [H]

Synonym: CLD_1435

Alternate gene names: 170757404

Gene position: 3352737-3351430 (Counterclockwise)

Preceding gene: 170756123

Following gene: 170754542

Centisome position: 84.7

GC content: 24.24

Gene sequence:

>1308_bases
TTGAGTTATAAGAGGAATATTGCAAGTAATTTTTTAACACAAATAATAGTATCAGCTATAGCCTTTCTTACTAGTATTAT
AGTTGCTAGAGCATTAGGGCCACAGGATAAAGGTTATGTTGCATATATATTATTAATATTTAATTTGATAGGAGAATATG
GTCATTTTGGAATAACTAGTGCTAGTACGTATTTCCAAAAGAAGACTAAATATTCTGCCAAAGAGGTTTATGATACTAAT
ATTACTTATTTGTTTATAGTATTTAGTATAATATCTTTAACTATAATAATTTTAAAGTCAACCGGATTTTTTTTAGTTGA
TTATAGTTGGTCTTTAATTATAGCTGGATTTAGTATTGTACTTTGTACATTTTTAAATACAATTCTTATAAATTTTTATA
TAGCAGATGAAAGGATACCAGAAGCTAATAAATGTAATTTAATAATGAATTTGTTAAAATCTATTCTTATTCTTATACTA
TGGATATTTGGTAATTTAAATGTCTTTACCTTTGTTTTGTGTCAATTTATGCCATTTATAGTTTCTATTTTAATTTTATA
CAAGAATCTTGGTATAACGTATAATATTCGATTTAACAAACAATTATTAAAATCAGAGTTTAAATTTGGAATAGTAATTT
ATTTAGCAACTTTGTTTATTTATTTAAATTATAGAATGGATCAAATTTTTATAAAAAATATGTTGGGAGAACAGCAATTA
GGGATATATTCTATTGCTGTATCATTGGCTGAATTATTATTCTTGATACCAGGAAGTGTGGGAACTGCCATACTTGGAAG
ATTGTATAATATAAAAGATAACAATAAAGAAAAAAAGTATATATTATCCATGACTGTAAAATATACGTTTTATATATGTT
TGTTTATTGGAATTTTAGGAATAATGATGACACCTTTAATACCATATGTATATGGTAAGGAATTTGCATCAGCAAAATCA
TCCACTATAATTTTATTTATTGGAATTATATTTGCATCAATCGGTAAGGTATCTTCTTCTTATTTTCAAAGCGAAGGAGC
ACCAATAATACACATGATTATTACATTAATTACCTTTTTAGCTAATTTACTTTTAAATGCTTTATTTATACCTAAATGGG
GTATTGATGGTGCAGCAGCTGCATCTACAATATCATATATTGTATATGGCTTAGTATATGTTGTGTTTTTTAAACAGAAA
GAAGATTTTAAGATTAGTGATTTTTTTATGTTTAATAAAAATGATTATAATATACTTATAAACAATAATCCTTTTTTAAA
TAGGTTAAGAAAGAGGAATAAAAAATAA

Upstream 100 bases:

>100_bases
GATAGTTGCAGGAGTACCAGCAAAAATATTTAATGATGTACCAAAAGAACAGTTGTTAGAAAATCAATAGCTAAAAATAA
GAATTAAAGGGTGTTTTAAG

Downstream 100 bases:

>100_bases
ATTAAAATAAAAATTTTATTTTAATTGGAGGATAATATGAAAATTAATTTTAATAAAATTAAAAACAATTTTAAGAATAA
ATATATAATTTTTTTTGCTA

Product: polysaccharide biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 434

Protein sequence:

>435_residues
MSYKRNIASNFLTQIIVSAIAFLTSIIVARALGPQDKGYVAYILLIFNLIGEYGHFGITSASTYFQKKTKYSAKEVYDTN
ITYLFIVFSIISLTIIILKSTGFFLVDYSWSLIIAGFSIVLCTFLNTILINFYIADERIPEANKCNLIMNLLKSILILIL
WIFGNLNVFTFVLCQFMPFIVSILILYKNLGITYNIRFNKQLLKSEFKFGIVIYLATLFIYLNYRMDQIFIKNMLGEQQL
GIYSIAVSLAELLFLIPGSVGTAILGRLYNIKDNNKEKKYILSMTVKYTFYICLFIGILGIMMTPLIPYVYGKEFASAKS
STIILFIGIIFASIGKVSSSYFQSEGAPIIHMIITLITFLANLLLNALFIPKWGIDGAAAASTISYIVYGLVYVVFFKQK
EDFKISDFFMFNKNDYNILINNNPFLNRLRKRNKK

Sequences:

>Translated_435_residues
MSYKRNIASNFLTQIIVSAIAFLTSIIVARALGPQDKGYVAYILLIFNLIGEYGHFGITSASTYFQKKTKYSAKEVYDTN
ITYLFIVFSIISLTIIILKSTGFFLVDYSWSLIIAGFSIVLCTFLNTILINFYIADERIPEANKCNLIMNLLKSILILIL
WIFGNLNVFTFVLCQFMPFIVSILILYKNLGITYNIRFNKQLLKSEFKFGIVIYLATLFIYLNYRMDQIFIKNMLGEQQL
GIYSIAVSLAELLFLIPGSVGTAILGRLYNIKDNNKEKKYILSMTVKYTFYICLFIGILGIMMTPLIPYVYGKEFASAKS
STIILFIGIIFASIGKVSSSYFQSEGAPIIHMIITLITFLANLLLNALFIPKWGIDGAAAASTISYIVYGLVYVVFFKQK
EDFKISDFFMFNKNDYNILINNNPFLNRLRKRNKK
>Mature_434_residues
SYKRNIASNFLTQIIVSAIAFLTSIIVARALGPQDKGYVAYILLIFNLIGEYGHFGITSASTYFQKKTKYSAKEVYDTNI
TYLFIVFSIISLTIIILKSTGFFLVDYSWSLIIAGFSIVLCTFLNTILINFYIADERIPEANKCNLIMNLLKSILILILW
IFGNLNVFTFVLCQFMPFIVSILILYKNLGITYNIRFNKQLLKSEFKFGIVIYLATLFIYLNYRMDQIFIKNMLGEQQLG
IYSIAVSLAELLFLIPGSVGTAILGRLYNIKDNNKEKKYILSMTVKYTFYICLFIGILGIMMTPLIPYVYGKEFASAKSS
TIILFIGIIFASIGKVSSSYFQSEGAPIIHMIITLITFLANLLLNALFIPKWGIDGAAAASTISYIVYGLVYVVFFKQKE
DFKISDFFMFNKNDYNILINNNPFLNRLRKRNKK

Specific function: Could be an O-antigen transporter [H]

COG id: COG2244

COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002797 [H]

Pfam domain/function: PF01943 Polysacc_synt [H]

EC number: NA

Molecular weight: Translated: 49606; Mature: 49475

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYKRNIASNFLTQIIVSAIAFLTSIIVARALGPQDKGYVAYILLIFNLIGEYGHFGITS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
ASTYFQKKTKYSAKEVYDTNITYLFIVFSIISLTIIILKSTGFFLVDYSWSLIIAGFSIV
HHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHH
LCTFLNTILINFYIADERIPEANKCNLIMNLLKSILILILWIFGNLNVFTFVLCQFMPFI
HHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
VSILILYKNLGITYNIRFNKQLLKSEFKFGIVIYLATLFIYLNYRMDQIFIKNMLGEQQL
HHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
GIYSIAVSLAELLFLIPGSVGTAILGRLYNIKDNNKEKKYILSMTVKYTFYICLFIGILG
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHH
IMMTPLIPYVYGKEFASAKSSTIILFIGIIFASIGKVSSSYFQSEGAPIIHMIITLITFL
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
ANLLLNALFIPKWGIDGAAAASTISYIVYGLVYVVFFKQKEDFKISDFFMFNKNDYNILI
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEE
NNNPFLNRLRKRNKK
CCCHHHHHHHHCCCC
>Mature Secondary Structure 
SYKRNIASNFLTQIIVSAIAFLTSIIVARALGPQDKGYVAYILLIFNLIGEYGHFGITS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
ASTYFQKKTKYSAKEVYDTNITYLFIVFSIISLTIIILKSTGFFLVDYSWSLIIAGFSIV
HHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHH
LCTFLNTILINFYIADERIPEANKCNLIMNLLKSILILILWIFGNLNVFTFVLCQFMPFI
HHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
VSILILYKNLGITYNIRFNKQLLKSEFKFGIVIYLATLFIYLNYRMDQIFIKNMLGEQQL
HHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
GIYSIAVSLAELLFLIPGSVGTAILGRLYNIKDNNKEKKYILSMTVKYTFYICLFIGILG
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHH
IMMTPLIPYVYGKEFASAKSSTIILFIGIIFASIGKVSSSYFQSEGAPIIHMIITLITFL
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
ANLLLNALFIPKWGIDGAAAASTISYIVYGLVYVVFFKQKEDFKISDFFMFNKNDYNILI
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEE
NNNPFLNRLRKRNKK
CCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7507920; 12384590; 12704152 [H]