| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is ilvA
Identifier: 170757357
GI number: 170757357
Start: 3801037
End: 3802254
Strand: Reverse
Name: ilvA
Synonym: CLD_0999
Alternate gene names: 170757357
Gene position: 3802254-3801037 (Counterclockwise)
Preceding gene: 170756076
Following gene: 170754736
Centisome position: 96.06
GC content: 32.35
Gene sequence:
>1218_bases ATGGAGTTAAACTTAGATACAATAAAAAAAGCTCAAAATAACATAAAAACAGTAGTTAGAAAAACACCTTTGTTTTATTC AAGTACTTTTTCTAGAAAAACAGGATATGAAGTATATTTAAAATGTGAAAATAAACAAAAGACCGGAGCTTTTAAATTAA GAGGCGCATATAACAAGATAGTTTCATTAACTGAGGAAGAAAGAAAAAAGGGGGTCATTGCATCTTCAGCAGGAAATCAT GCTCAAGGTGTTGCTTATGCAGCTACCGCCTTTGGAATAAAATCTACTATAGCTATGCCTAAAACTGCTCCTCAAGCTAA GGTTATGGCAACAAAGGGATATGGAGCAGAAGTTGTTCAGCACGGGGAAGTTTATGATGAATGTTATGAAAAAGCATTAG AAATACAAAAGGCTACAGGAGCTACTTTTGTACATCCTTTTAATGATATACACGTTATGGCGGGTCAAGGTACAATAGCA TTAGAAATATTAGAAGAAATAGAAGATATAGATGCTATAATAGTTCCAATAGGAGGAGGAGGGCTAATATCAGGAATAGC TGTAGCAGCTAAATCCATAAAGCCAGATATAAAAATTATAGGAGTTCAATCAGCTATTATAGCCTCTACAAAGGCGTCAT TAGAAAAAAATGAAATTGTAACTTTGCCAGGAGCTAAGTCTTTAGCAGATGGTATTTCAGTAAAAACTCCAGGGGATATT GCTTTTAAATATATTAGAGAATATGTAGATGAAGTAGTTACAGTTACAGAAGATGAAATAGCTTATGGAATTTTTGAACT TATTGAGAAGACGAAAGTTATTGCAGAGGGTGCGGGAGCATCAACTGTTGCAGCTTTATTAGCTAATAAGATTAATATTA AAGGTAAAAAGGTTGTAGCTCTAATAAGTGGTGGTAATATAGATATAGCTATGATATCTAAAATAATAGATAGACAGCTT ATAATGCTTAAGAGAAGAATAAGATTTAAAGTAGAATTACAGGATAAAATAGGAGAATTCGAGGATGTTATTTCAAATAT TGTTTCTACGGGAGCTAATATAGTTAAGGCTAGACAGGATACTAATTGGAGCGAAAAGGGGCTAGAATATGCAAATGTAA TATTTGAAGTAGAAGTTCAGAGTAAAGAACAAGGAGATAAATTATTGAAACAACTTAGTGAAAAAGGGTATAATATACAA ACAAATATATGTATGTAA
Upstream 100 bases:
>100_bases GTATTAAAAGTTTATTGGGTATAGGTTAATAGATTGAATAAAAATATTATATGGTTTATTATAAAAATATAATTTAGAAT GGGATGGGAGATAGATGATT
Downstream 100 bases:
>100_bases TAAATTTAGTAAAATAGGAGGTAAATAGATGAAGGTTTACAACACTTTAACTAATAAAAAAGAAGAGTTTCTTACGTTAG TACCAGGAGAAGTTAAAATG
Product: threonine dehydratase
Products: NA
Alternate protein names: Threonine deaminase [H]
Number of amino acids: Translated: 405; Mature: 405
Protein sequence:
>405_residues MELNLDTIKKAQNNIKTVVRKTPLFYSSTFSRKTGYEVYLKCENKQKTGAFKLRGAYNKIVSLTEEERKKGVIASSAGNH AQGVAYAATAFGIKSTIAMPKTAPQAKVMATKGYGAEVVQHGEVYDECYEKALEIQKATGATFVHPFNDIHVMAGQGTIA LEILEEIEDIDAIIVPIGGGGLISGIAVAAKSIKPDIKIIGVQSAIIASTKASLEKNEIVTLPGAKSLADGISVKTPGDI AFKYIREYVDEVVTVTEDEIAYGIFELIEKTKVIAEGAGASTVAALLANKINIKGKKVVALISGGNIDIAMISKIIDRQL IMLKRRIRFKVELQDKIGEFEDVISNIVSTGANIVKARQDTNWSEKGLEYANVIFEVEVQSKEQGDKLLKQLSEKGYNIQ TNICM
Sequences:
>Translated_405_residues MELNLDTIKKAQNNIKTVVRKTPLFYSSTFSRKTGYEVYLKCENKQKTGAFKLRGAYNKIVSLTEEERKKGVIASSAGNH AQGVAYAATAFGIKSTIAMPKTAPQAKVMATKGYGAEVVQHGEVYDECYEKALEIQKATGATFVHPFNDIHVMAGQGTIA LEILEEIEDIDAIIVPIGGGGLISGIAVAAKSIKPDIKIIGVQSAIIASTKASLEKNEIVTLPGAKSLADGISVKTPGDI AFKYIREYVDEVVTVTEDEIAYGIFELIEKTKVIAEGAGASTVAALLANKINIKGKKVVALISGGNIDIAMISKIIDRQL IMLKRRIRFKVELQDKIGEFEDVISNIVSTGANIVKARQDTNWSEKGLEYANVIFEVEVQSKEQGDKLLKQLSEKGYNIQ TNICM >Mature_405_residues MELNLDTIKKAQNNIKTVVRKTPLFYSSTFSRKTGYEVYLKCENKQKTGAFKLRGAYNKIVSLTEEERKKGVIASSAGNH AQGVAYAATAFGIKSTIAMPKTAPQAKVMATKGYGAEVVQHGEVYDECYEKALEIQKATGATFVHPFNDIHVMAGQGTIA LEILEEIEDIDAIIVPIGGGGLISGIAVAAKSIKPDIKIIGVQSAIIASTKASLEKNEIVTLPGAKSLADGISVKTPGDI AFKYIREYVDEVVTVTEDEIAYGIFELIEKTKVIAEGAGASTVAALLANKINIKGKKVVALISGGNIDIAMISKIIDRQL IMLKRRIRFKVELQDKIGEFEDVISNIVSTGANIVKARQDTNWSEKGLEYANVIFEVEVQSKEQGDKLLKQLSEKGYNIQ TNICM
Specific function: Acts on both serine and threonine, and properly considered as a hydroxy amino acid deaminase [H]
COG id: COG1171
COG function: function code E; Threonine dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serine/threonine dehydratase family [H]
Homologues:
Organism=Homo sapiens, GI11345492, Length=310, Percent_Identity=37.0967741935484, Blast_Score=201, Evalue=7e-52, Organism=Homo sapiens, GI33469958, Length=321, Percent_Identity=30.2180685358255, Blast_Score=90, Evalue=4e-18, Organism=Homo sapiens, GI19923959, Length=327, Percent_Identity=27.82874617737, Blast_Score=86, Evalue=9e-17, Organism=Escherichia coli, GI1789505, Length=317, Percent_Identity=47.6340694006309, Blast_Score=258, Evalue=4e-70, Organism=Escherichia coli, GI1790207, Length=383, Percent_Identity=34.2036553524804, Blast_Score=211, Evalue=9e-56, Organism=Caenorhabditis elegans, GI71991565, Length=384, Percent_Identity=38.0208333333333, Blast_Score=231, Evalue=8e-61, Organism=Caenorhabditis elegans, GI17537387, Length=393, Percent_Identity=35.1145038167939, Blast_Score=192, Evalue=3e-49, Organism=Caenorhabditis elegans, GI17508781, Length=311, Percent_Identity=30.8681672025724, Blast_Score=146, Evalue=2e-35, Organism=Saccharomyces cerevisiae, GI6322631, Length=306, Percent_Identity=39.5424836601307, Blast_Score=204, Evalue=1e-53, Organism=Saccharomyces cerevisiae, GI6320930, Length=399, Percent_Identity=33.3333333333333, Blast_Score=192, Evalue=9e-50, Organism=Saccharomyces cerevisiae, GI6319788, Length=305, Percent_Identity=24.2622950819672, Blast_Score=79, Evalue=1e-15, Organism=Drosophila melanogaster, GI21355833, Length=350, Percent_Identity=40, Blast_Score=209, Evalue=4e-54, Organism=Drosophila melanogaster, GI24645328, Length=266, Percent_Identity=38.7218045112782, Blast_Score=145, Evalue=4e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001926 - InterPro: IPR000634 - InterPro: IPR005789 [H]
Pfam domain/function: PF00291 PALP [H]
EC number: =4.3.1.19 [H]
Molecular weight: Translated: 43937; Mature: 43937
Theoretical pI: Translated: 8.65; Mature: 8.65
Prosite motif: PS00165 DEHYDRATASE_SER_THR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELNLDTIKKAQNNIKTVVRKTPLFYSSTFSRKTGYEVYLKCENKQKTGAFKLRGAYNKI CCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEECCCCCCCCEEECCHHHHH VSLTEEERKKGVIASSAGNHAQGVAYAATAFGIKSTIAMPKTAPQAKVMATKGYGAEVVQ HHCCHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH HGEVYDECYEKALEIQKATGATFVHPFNDIHVMAGQGTIALEILEEIEDIDAIIVPIGGG CCHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCC GLISGIAVAAKSIKPDIKIIGVQSAIIASTKASLEKNEIVTLPGAKSLADGISVKTPGDI HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCEEECCCCHHHHCCCCCCCCHHH AFKYIREYVDEVVTVTEDEIAYGIFELIEKTKVIAEGAGASTVAALLANKINIKGKKVVA HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEE LISGGNIDIAMISKIIDRQLIMLKRRIRFKVELQDKIGEFEDVISNIVSTGANIVKARQD EEECCCCHHHHHHHHHHHHHHHHHHHHHEEEEEHHHCCHHHHHHHHHHHCCCCEEEECCC TNWSEKGLEYANVIFEVEVQSKEQGDKLLKQLSEKGYNIQTNICM CCHHHHCCEEEEEEEEEEECCCHHHHHHHHHHHHCCCEEEEECCC >Mature Secondary Structure MELNLDTIKKAQNNIKTVVRKTPLFYSSTFSRKTGYEVYLKCENKQKTGAFKLRGAYNKI CCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEECCCCCCCCEEECCHHHHH VSLTEEERKKGVIASSAGNHAQGVAYAATAFGIKSTIAMPKTAPQAKVMATKGYGAEVVQ HHCCHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH HGEVYDECYEKALEIQKATGATFVHPFNDIHVMAGQGTIALEILEEIEDIDAIIVPIGGG CCHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCC GLISGIAVAAKSIKPDIKIIGVQSAIIASTKASLEKNEIVTLPGAKSLADGISVKTPGDI HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCEEECCCCHHHHCCCCCCCCHHH AFKYIREYVDEVVTVTEDEIAYGIFELIEKTKVIAEGAGASTVAALLANKINIKGKKVVA HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEE LISGGNIDIAMISKIIDRQLIMLKRRIRFKVELQDKIGEFEDVISNIVSTGANIVKARQD EEECCCCHHHHHHHHHHHHHHHHHHHHHEEEEEHHHCCHHHHHHHHHHHCCCCEEEECCC TNWSEKGLEYANVIFEVEVQSKEQGDKLLKQLSEKGYNIQTNICM CCHHHHCCEEEEEEEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA