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The map label for this gene is glcC [H]

Identifier: 170757338

GI number: 170757338

Start: 2263949

End: 2264638

Strand: Reverse

Name: glcC [H]

Synonym: CLD_2511

Alternate gene names: 170757338

Gene position: 2264638-2263949 (Counterclockwise)

Preceding gene: 170755481

Following gene: 170755762

Centisome position: 57.21

GC content: 32.75

Gene sequence:

>690_bases
ATGACTATTCAAAAAATAAATCGTTCAACTTTAGTAGGGCAGGTGACTGCCCAGATTGAAAATATGATAGAAAGTGGCTT
ATGGAAAGTAGGGGAGAAGATTCCTGCAGAACCGGAATTAATGAATAAATTTGATGTTAGTAGAAACACTTTAAGAGAAG
CAATTCAATCTTTAGTTCATGTTGGTATGCTTGAAACTCGACAAGGTATAGGAACCATTGTAAAATCCAACAGTAATTTA
GGAATGGCGTTGGAGAAAAAAATTCAAAAAAGCGATCTTTTAGAAACATTAGAAGTTCGTTTGGCGCTTGAAAGGGAAGC
AGCGCAACTAGCTGCTGAGAGAAGAGATGTAGAAGATCTAAAACAAATCGAAAATTGCCTAAAAAAATGCAAGATAGCTG
CTGAAAACAATGACTCACTCCAATTCATTAAAATGGATATTGATTTTCATAAGTCTATTGTACAGGCTACACATAATAAG
ATGTTTATTGAGCTTTATGAACATATTACCGATTCATTACAAAATTCCGTTGATAAGGTAATGGAAATAAAAAATACTAC
AAGATTTGAGAGTGAAATTCATTATAGTTTACTTGAGGCAATTAAAACAGGAGATACACAATTAGCTGTTGAGAGTGTTA
ATGAATATTTGAACAAGGCAAAAGAAGCTCTGTATACTATGATAAATTAA

Upstream 100 bases:

>100_bases
GCAATATATAAGTTTTTAGCATACCTTGACAATATCAATTGATTCGTGTTATCATACAATAAACCAATCATCCTACGTTT
AGAAAGGGGAATATTATTAT

Downstream 100 bases:

>100_bases
TAAAAAGGAAAAATATACGAAAGACTAGGAGGAAACTCATATGATGTCACTAAATAAATCAGATAAAAAACAAAATAATA
TGGATTTTAAAGTACGTAAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTIQKINRSTLVGQVTAQIENMIESGLWKVGEKIPAEPELMNKFDVSRNTLREAIQSLVHVGMLETRQGIGTIVKSNSNL
GMALEKKIQKSDLLETLEVRLALEREAAQLAAERRDVEDLKQIENCLKKCKIAAENNDSLQFIKMDIDFHKSIVQATHNK
MFIELYEHITDSLQNSVDKVMEIKNTTRFESEIHYSLLEAIKTGDTQLAVESVNEYLNKAKEALYTMIN

Sequences:

>Translated_229_residues
MTIQKINRSTLVGQVTAQIENMIESGLWKVGEKIPAEPELMNKFDVSRNTLREAIQSLVHVGMLETRQGIGTIVKSNSNL
GMALEKKIQKSDLLETLEVRLALEREAAQLAAERRDVEDLKQIENCLKKCKIAAENNDSLQFIKMDIDFHKSIVQATHNK
MFIELYEHITDSLQNSVDKVMEIKNTTRFESEIHYSLLEAIKTGDTQLAVESVNEYLNKAKEALYTMIN
>Mature_228_residues
TIQKINRSTLVGQVTAQIENMIESGLWKVGEKIPAEPELMNKFDVSRNTLREAIQSLVHVGMLETRQGIGTIVKSNSNLG
MALEKKIQKSDLLETLEVRLALEREAAQLAAERRDVEDLKQIENCLKKCKIAAENNDSLQFIKMDIDFHKSIVQATHNKM
FIELYEHITDSLQNSVDKVMEIKNTTRFESEIHYSLLEAIKTGDTQLAVESVNEYLNKAKEALYTMIN

Specific function: Activator for the glycolate oxidation locus [H]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789353, Length=177, Percent_Identity=32.7683615819209, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786303, Length=235, Percent_Identity=31.063829787234, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790032, Length=221, Percent_Identity=28.9592760180996, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI48994955, Length=219, Percent_Identity=28.7671232876712, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1789621, Length=228, Percent_Identity=25, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1790780, Length=229, Percent_Identity=27.0742358078603, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26052; Mature: 25921

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIQKINRSTLVGQVTAQIENMIESGLWKVGEKIPAEPELMNKFDVSRNTLREAIQSLVH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHH
VGMLETRQGIGTIVKSNSNLGMALEKKIQKSDLLETLEVRLALEREAAQLAAERRDVEDL
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
KQIENCLKKCKIAAENNDSLQFIKMDIDFHKSIVQATHNKMFIELYEHITDSLQNSVDKV
HHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MEIKNTTRFESEIHYSLLEAIKTGDTQLAVESVNEYLNKAKEALYTMIN
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TIQKINRSTLVGQVTAQIENMIESGLWKVGEKIPAEPELMNKFDVSRNTLREAIQSLVH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHH
VGMLETRQGIGTIVKSNSNLGMALEKKIQKSDLLETLEVRLALEREAAQLAAERRDVEDL
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
KQIENCLKKCKIAAENNDSLQFIKMDIDFHKSIVQATHNKMFIELYEHITDSLQNSVDKV
HHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MEIKNTTRFESEIHYSLLEAIKTGDTQLAVESVNEYLNKAKEALYTMIN
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]