| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is cdr [H]
Identifier: 170757317
GI number: 170757317
Start: 219834
End: 222287
Strand: Direct
Name: cdr [H]
Synonym: CLD_0598
Alternate gene names: 170757317
Gene position: 219834-222287 (Clockwise)
Preceding gene: 170756506
Following gene: 170755214
Centisome position: 5.55
GC content: 31.5
Gene sequence:
>2454_bases ATGAATAAGAAGGTACTAATCATTGGAGGTGTAGCAGGAGGAGCTTCTGCAGCCGCAAGACTTAGAAGACTTGATGAAAA TGCACAAATAATAATGTTTGAAAGAGGAGAATATATTTCCTTTGCTAATTGTGGATTACCTTATTATATAGGAGAAACTA TAAAGGAAAGAGATAATCTTTTAGTTCAAACTCCTGAAGCTATGATGGGTAGATTTAACATTGATGTTAGAGTAAATAGT GAAGTCGTATCAATAAATACCAAGGAAAAGAAAGTTACAGTAAATAGTAAAAGAAAGGGAAACTATGAGGAAACATATGA TTATATAATAATGTCACCAGGGGCAACACCTATAAAACCACCTATAGAAGGGATAAATAGTTCGAAAATATTTACATTAA GAAATATTCCAGATACAGATAGAATAAAAGATTATGTAGACAACAAAAATGTTAAGAGTGTGGTAGTTGTTGGTGGAGGA TATATAGGTATCGAAATGGCAGAGAACCTTAGAGAGAGAGGTATAAATGTGGTATTAGTAGAAGCTGCTCCCCACATATT AGCACCCTTTGATTCAGATATGGTTACTTTTGCTGAACAGGAACTACAGGACAACGGTGCAGGTTTAATTTTAGGAGATG GAGTTAAATCTTTTGAAGAAAATAATAACAAAATAAAAGTATCCCTTCAAAGTGGTACTGAGCTAAATACGGATATGATT ATATTGGCTATAGGTGTGAAAGCGGATACAGAGTTTTTAAAGGGATCTTCAATAGAGATAGGCCCTAGAGGTCATATAAT AGTGGATAAACATATGAAAACTAATGTAGAGGGCATATATGCCGTAGGGGATGCTATAGAGGTAGTAGACTATATAAATG AAAATAAAACTGCTATACCATTGGCAGGCCCAGCAAATAAGCAGGGCAGAATAGCAGCAGATAATATATGTGAATTAAAT TCTTCTTATAAAGGAACTCAAGGAACTGCTATAATTAAAATTTTTGGATTAACAGGTGCTAGTACAGGTAATAATGAAAG AACTTTATCTAAATTTAATATACCATATAAGGTAGTTTATACTCATTCTCAGTCCCATGCAAGTTACTATCCAGGAGGCA CGCCAATAAGCTTAAAATTAATATTTGATACTAAAGGTAAGATATTAGGGGCTCAAGCTTTTGGCTATGATGGAGTAGAT AAGAGAATAGATGATATTGCTATAGTTATAAGATTTGGTGGAACTATATATGATTTAGAAGAGTTAGAATTAGCTTATGC TCCTCCATATTCTTCGGCTAAGGATCCTGTTAATATGTTAGGGTTTGTAGCAGAAAATGTATTAACAGGTAAAGTAGAAA CTGTATTGTCTAAAGATATAGATAATAGAGATAAAGATAAAGTTATATTATTGGATGTAAGAGATGATATAGAAATTGAA AATGGTAAAATAGAGGGCGCAATAGAAATACCAATAAATCAATTAAGAAATAGATTAAGTGAAATTCCAAAGGATAAAGA AGTATGGATATATTGTCAAATAGGGTTAAGAGGATATATTGCTGCTAGGATATTAATGGCTAATGGTTATAAGGTTAAAA ATCTTAATGGTGGATATAAAACTTACATTATGAATAAGTTTATACCTGAAAAAATAAATAAGATGCCAGAAGAGAAAATG AAGGGAAATAATGAAACTAAGGAAGAGGTAGCAGAAACTTTGGAACTAGATGCTTGTGGTTTAAGTTGTCCTGGACCATT AATGAAAGTAAACAATACTGTAAGTGAAATGAATGAAGGAGAAACTTTAAAAGTAAAAGCTTCAGATCCTGGTTTTTATG TAGATATACAATCTTGGTGTGAAAGAACAAATAATGAATTGTTAAGTGTATCAAAGGATAAAGGAATAGTAAAAGCTCTT ATTAAGAAAGGTAAAGAAAAATTACAAGTAGATGAAAAAGAAAGAAAAGGTAAAATCAAAGAAAATGATAATAAGACATT AGTTGTGTTTAGTGGAGATTTGGATAAAGCAATAGCATCCTTTGTTATAGCAAATGGTGCTGTAGCTATGGGGAAAAAGG TAACTATGTTCTTTACATTTTGGGGATTAAATATATTAAGAAAGCCAGAAAAAACAAAGATACAAAAAGCATTTATGGAT AAAATGTTTGCATCAATGATGCCAAGAGGAAGCAAAAAGTTAAAGCTTTCTAAAATGAACATGATGGGAATGGGCTCTAA AATGATCAGAAAAGTAATGAAAAACAAAAATATATCTTCTCTTGAAGAATTAATACAATCAGCCATAGATTCAGGTATAA ATATACTTGCATGCCAAATGTCAATGGATGTTATGGGAATAAAAGAAGAGGAATTAATAGATGGAGTAAATATAGGAGGA GTAGGATATTATTTAGGAGAAGCTGAGGACGCTAATGTAAATTTATTCATATAA
Upstream 100 bases:
>100_bases AAATTATCATGTTTCCAATAAAAAAGCAGAACAATTGATAAAAATTTTGTTTAATGAGTAATAGTACTAAGAAATTTCTA TTTAAGTAGGAGGAATTACA
Downstream 100 bases:
>100_bases ATAAAATAAAAATCCTATGGAACATGTTCATAGGATTTTTATTTTATTTAGAAATCTAGATAAGAATCCCTTTTGGGGTT TAGTATTATCGATTTCATCA
Product: pyridine nucleotide-disulphide oxidoreductase family protein
Products: NA
Alternate protein names: CoA-disulfide reductase; CoADR [H]
Number of amino acids: Translated: 817; Mature: 817
Protein sequence:
>817_residues MNKKVLIIGGVAGGASAAARLRRLDENAQIIMFERGEYISFANCGLPYYIGETIKERDNLLVQTPEAMMGRFNIDVRVNS EVVSINTKEKKVTVNSKRKGNYEETYDYIIMSPGATPIKPPIEGINSSKIFTLRNIPDTDRIKDYVDNKNVKSVVVVGGG YIGIEMAENLRERGINVVLVEAAPHILAPFDSDMVTFAEQELQDNGAGLILGDGVKSFEENNNKIKVSLQSGTELNTDMI ILAIGVKADTEFLKGSSIEIGPRGHIIVDKHMKTNVEGIYAVGDAIEVVDYINENKTAIPLAGPANKQGRIAADNICELN SSYKGTQGTAIIKIFGLTGASTGNNERTLSKFNIPYKVVYTHSQSHASYYPGGTPISLKLIFDTKGKILGAQAFGYDGVD KRIDDIAIVIRFGGTIYDLEELELAYAPPYSSAKDPVNMLGFVAENVLTGKVETVLSKDIDNRDKDKVILLDVRDDIEIE NGKIEGAIEIPINQLRNRLSEIPKDKEVWIYCQIGLRGYIAARILMANGYKVKNLNGGYKTYIMNKFIPEKINKMPEEKM KGNNETKEEVAETLELDACGLSCPGPLMKVNNTVSEMNEGETLKVKASDPGFYVDIQSWCERTNNELLSVSKDKGIVKAL IKKGKEKLQVDEKERKGKIKENDNKTLVVFSGDLDKAIASFVIANGAVAMGKKVTMFFTFWGLNILRKPEKTKIQKAFMD KMFASMMPRGSKKLKLSKMNMMGMGSKMIRKVMKNKNISSLEELIQSAIDSGINILACQMSMDVMGIKEEELIDGVNIGG VGYYLGEAEDANVNLFI
Sequences:
>Translated_817_residues MNKKVLIIGGVAGGASAAARLRRLDENAQIIMFERGEYISFANCGLPYYIGETIKERDNLLVQTPEAMMGRFNIDVRVNS EVVSINTKEKKVTVNSKRKGNYEETYDYIIMSPGATPIKPPIEGINSSKIFTLRNIPDTDRIKDYVDNKNVKSVVVVGGG YIGIEMAENLRERGINVVLVEAAPHILAPFDSDMVTFAEQELQDNGAGLILGDGVKSFEENNNKIKVSLQSGTELNTDMI ILAIGVKADTEFLKGSSIEIGPRGHIIVDKHMKTNVEGIYAVGDAIEVVDYINENKTAIPLAGPANKQGRIAADNICELN SSYKGTQGTAIIKIFGLTGASTGNNERTLSKFNIPYKVVYTHSQSHASYYPGGTPISLKLIFDTKGKILGAQAFGYDGVD KRIDDIAIVIRFGGTIYDLEELELAYAPPYSSAKDPVNMLGFVAENVLTGKVETVLSKDIDNRDKDKVILLDVRDDIEIE NGKIEGAIEIPINQLRNRLSEIPKDKEVWIYCQIGLRGYIAARILMANGYKVKNLNGGYKTYIMNKFIPEKINKMPEEKM KGNNETKEEVAETLELDACGLSCPGPLMKVNNTVSEMNEGETLKVKASDPGFYVDIQSWCERTNNELLSVSKDKGIVKAL IKKGKEKLQVDEKERKGKIKENDNKTLVVFSGDLDKAIASFVIANGAVAMGKKVTMFFTFWGLNILRKPEKTKIQKAFMD KMFASMMPRGSKKLKLSKMNMMGMGSKMIRKVMKNKNISSLEELIQSAIDSGINILACQMSMDVMGIKEEELIDGVNIGG VGYYLGEAEDANVNLFI >Mature_817_residues MNKKVLIIGGVAGGASAAARLRRLDENAQIIMFERGEYISFANCGLPYYIGETIKERDNLLVQTPEAMMGRFNIDVRVNS EVVSINTKEKKVTVNSKRKGNYEETYDYIIMSPGATPIKPPIEGINSSKIFTLRNIPDTDRIKDYVDNKNVKSVVVVGGG YIGIEMAENLRERGINVVLVEAAPHILAPFDSDMVTFAEQELQDNGAGLILGDGVKSFEENNNKIKVSLQSGTELNTDMI ILAIGVKADTEFLKGSSIEIGPRGHIIVDKHMKTNVEGIYAVGDAIEVVDYINENKTAIPLAGPANKQGRIAADNICELN SSYKGTQGTAIIKIFGLTGASTGNNERTLSKFNIPYKVVYTHSQSHASYYPGGTPISLKLIFDTKGKILGAQAFGYDGVD KRIDDIAIVIRFGGTIYDLEELELAYAPPYSSAKDPVNMLGFVAENVLTGKVETVLSKDIDNRDKDKVILLDVRDDIEIE NGKIEGAIEIPINQLRNRLSEIPKDKEVWIYCQIGLRGYIAARILMANGYKVKNLNGGYKTYIMNKFIPEKINKMPEEKM KGNNETKEEVAETLELDACGLSCPGPLMKVNNTVSEMNEGETLKVKASDPGFYVDIQSWCERTNNELLSVSKDKGIVKAL IKKGKEKLQVDEKERKGKIKENDNKTLVVFSGDLDKAIASFVIANGAVAMGKKVTMFFTFWGLNILRKPEKTKIQKAFMD KMFASMMPRGSKKLKLSKMNMMGMGSKMIRKVMKNKNISSLEELIQSAIDSGINILACQMSMDVMGIKEEELIDGVNIGG VGYYLGEAEDANVNLFI
Specific function: Catalyzes specifically the NADPH-dependent reduction of coenzyme A disulfide [H]
COG id: COG0446
COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-III pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Homo sapiens, GI21389617, Length=318, Percent_Identity=28.6163522012579, Blast_Score=124, Evalue=5e-28, Organism=Homo sapiens, GI65787454, Length=318, Percent_Identity=28.6163522012579, Blast_Score=124, Evalue=5e-28, Organism=Homo sapiens, GI226437568, Length=318, Percent_Identity=28.6163522012579, Blast_Score=123, Evalue=6e-28, Organism=Homo sapiens, GI50301238, Length=341, Percent_Identity=25.2199413489736, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI1789065, Length=355, Percent_Identity=22.5352112676056, Blast_Score=90, Evalue=4e-19, Organism=Escherichia coli, GI1789765, Length=331, Percent_Identity=25.3776435045317, Blast_Score=82, Evalue=2e-16, Organism=Escherichia coli, GI1788892, Length=292, Percent_Identity=22.2602739726027, Blast_Score=76, Evalue=9e-15, Organism=Escherichia coli, GI1789915, Length=338, Percent_Identity=26.0355029585799, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI87082354, Length=377, Percent_Identity=24.1379310344828, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17559934, Length=242, Percent_Identity=28.099173553719, Blast_Score=95, Evalue=1e-19, Organism=Drosophila melanogaster, GI24639257, Length=320, Percent_Identity=24.375, Blast_Score=90, Evalue=6e-18, Organism=Drosophila melanogaster, GI281359715, Length=320, Percent_Identity=24.375, Blast_Score=90, Evalue=6e-18, Organism=Drosophila melanogaster, GI281359713, Length=320, Percent_Identity=24.375, Blast_Score=90, Evalue=6e-18, Organism=Drosophila melanogaster, GI24639250, Length=320, Percent_Identity=24.375, Blast_Score=90, Evalue=6e-18, Organism=Drosophila melanogaster, GI18543267, Length=320, Percent_Identity=24.375, Blast_Score=90, Evalue=6e-18, Organism=Drosophila melanogaster, GI24639252, Length=320, Percent_Identity=24.375, Blast_Score=90, Evalue=6e-18, Organism=Drosophila melanogaster, GI24585130, Length=220, Percent_Identity=28.6363636363636, Blast_Score=80, Evalue=5e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017758 - InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR004099 - InterPro: IPR001327 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]
EC number: =1.8.1.14 [H]
Molecular weight: Translated: 90102; Mature: 90102
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: PS50206 RHODANESE_3 ; PS01148 UPF0033
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKVLIIGGVAGGASAAARLRRLDENAQIIMFERGEYISFANCGLPYYIGETIKERDNL CCCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHCCCCE LVQTPEAMMGRFNIDVRVNSEVVSINTKEKKVTVNSKRKGNYEETYDYIIMSPGATPIKP EEECCHHHHCEEEEEEEECCEEEEEECCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCC PIEGINSSKIFTLRNIPDTDRIKDYVDNKNVKSVVVVGGGYIGIEMAENLRERGINVVLV CCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEEEECCCEEEHHHHHHHHHCCCCEEEE EAAPHILAPFDSDMVTFAEQELQDNGAGLILGDGVKSFEENNNKIKVSLQSGTELNTDMI ECCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHCCCCEEEEEECCCCCCCCCEE ILAIGVKADTEFLKGSSIEIGPRGHIIVDKHMKTNVEGIYAVGDAIEVVDYINENKTAIP EEEEECCCCHHHHCCCCEEECCCCCEEECCCCCCCCCEEEEECHHHHHHHHHCCCCEEEE LAGPANKQGRIAADNICELNSSYKGTQGTAIIKIFGLTGASTGNNERTLSKFNIPYKVVY ECCCCCCCCCEECCCHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEECCCEEEEE THSQSHASYYPGGTPISLKLIFDTKGKILGAQAFGYDGVDKRIDDIAIVIRFGGTIYDLE EECCCCCCCCCCCCCEEEEEEEECCCCEEEEHCCCCCCCCCCCCCEEEEEEECCEEEEHH ELELAYAPPYSSAKDPVNMLGFVAENVLTGKVETVLSKDIDNRDKDKVILLDVRDDIEIE HCEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEECCCCEEE NGKIEGAIEIPINQLRNRLSEIPKDKEVWIYCQIGLRGYIAARILMANGYKVKNLNGGYK CCEEEEEEECCHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEECCEEEEECCCCEE TYIMNKFIPEKINKMPEEKMKGNNETKEEVAETLELDACGLSCPGPLMKVNNTVSEMNEG EEEEHHCCHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHCCCC ETLKVKASDPGFYVDIQSWCERTNNELLSVSKDKGIVKALIKKGKEKLQVDEKERKGKIK CEEEEEECCCCEEEEHHHHHHHCCCCEEEECCCCHHHHHHHHCCHHHCCCCCHHHCCCCC ENDNKTLVVFSGDLDKAIASFVIANGAVAMGKKVTMFFTFWGLNILRKPEKTKIQKAFMD CCCCCEEEEEECCHHHHHHHHHHHCCCEECCCEEEEEEEEECHHHHCCCHHHHHHHHHHH KMFASMMPRGSKKLKLSKMNMMGMGSKMIRKVMKNKNISSLEELIQSAIDSGINILACQM HHHHHHCCCCCCEEEEEECCHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEE SMDVMGIKEEELIDGVNIGGVGYYLGEAEDANVNLFI ECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCEEEEC >Mature Secondary Structure MNKKVLIIGGVAGGASAAARLRRLDENAQIIMFERGEYISFANCGLPYYIGETIKERDNL CCCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCHHHHHHHHCCCCE LVQTPEAMMGRFNIDVRVNSEVVSINTKEKKVTVNSKRKGNYEETYDYIIMSPGATPIKP EEECCHHHHCEEEEEEEECCEEEEEECCCEEEEECCCCCCCCCCCEEEEEECCCCCCCCC PIEGINSSKIFTLRNIPDTDRIKDYVDNKNVKSVVVVGGGYIGIEMAENLRERGINVVLV CCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEEEECCCEEEHHHHHHHHHCCCCEEEE EAAPHILAPFDSDMVTFAEQELQDNGAGLILGDGVKSFEENNNKIKVSLQSGTELNTDMI ECCCCEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHCCCCEEEEEECCCCCCCCCEE ILAIGVKADTEFLKGSSIEIGPRGHIIVDKHMKTNVEGIYAVGDAIEVVDYINENKTAIP EEEEECCCCHHHHCCCCEEECCCCCEEECCCCCCCCCEEEEECHHHHHHHHHCCCCEEEE LAGPANKQGRIAADNICELNSSYKGTQGTAIIKIFGLTGASTGNNERTLSKFNIPYKVVY ECCCCCCCCCEECCCHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEECCCEEEEE THSQSHASYYPGGTPISLKLIFDTKGKILGAQAFGYDGVDKRIDDIAIVIRFGGTIYDLE EECCCCCCCCCCCCCEEEEEEEECCCCEEEEHCCCCCCCCCCCCCEEEEEEECCEEEEHH ELELAYAPPYSSAKDPVNMLGFVAENVLTGKVETVLSKDIDNRDKDKVILLDVRDDIEIE HCEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEECCCCEEE NGKIEGAIEIPINQLRNRLSEIPKDKEVWIYCQIGLRGYIAARILMANGYKVKNLNGGYK CCEEEEEEECCHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEECCEEEEECCCCEE TYIMNKFIPEKINKMPEEKMKGNNETKEEVAETLELDACGLSCPGPLMKVNNTVSEMNEG EEEEHHCCHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHCCCC ETLKVKASDPGFYVDIQSWCERTNNELLSVSKDKGIVKALIKKGKEKLQVDEKERKGKIK CEEEEEECCCCEEEEHHHHHHHCCCCEEEECCCCHHHHHHHHCCHHHCCCCCHHHCCCCC ENDNKTLVVFSGDLDKAIASFVIANGAVAMGKKVTMFFTFWGLNILRKPEKTKIQKAFMD CCCCCEEEEEECCHHHHHHHHHHHCCCEECCCEEEEEEEEECHHHHCCCHHHHHHHHHHH KMFASMMPRGSKKLKLSKMNMMGMGSKMIRKVMKNKNISSLEELIQSAIDSGINILACQM HHHHHHCCCCCCEEEEEECCHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEE SMDVMGIKEEELIDGVNIGGVGYYLGEAEDANVNLFI ECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA