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The map label for this gene is ywqD [H]

Identifier: 170757290

GI number: 170757290

Start: 2866884

End: 2867594

Strand: Reverse

Name: ywqD [H]

Synonym: CLD_1878

Alternate gene names: 170757290

Gene position: 2867594-2866884 (Counterclockwise)

Preceding gene: 170754381

Following gene: 170757491

Centisome position: 72.45

GC content: 30.52

Gene sequence:

>711_bases
TTGGATAGAAACTTAAGTTTGATAACTATAAAAGAACCAAAGTCCCCAATATCTGAAGCCTATAGGACATTAAGAACTAA
TATACAATTTTCATCCTTTGATGAAAAAATAAGTGTAATTTTTGTGACTAGTTCTACTCCAGGAGAGGGTAAATCTACAA
CTTCAGCGAATTTAGCCATAACTATGGCACAAAATGGTTCAGAAACTATTTTGGTAGATTGTGATCTTAGAAAACCTAAT
GTACATAAGTTATTTAAGCTATCTAATACAAGGGGATTATCTAATTTGCTTATAGAAGACAATGGTATAGATAAGGTAAT
ACAACAAAGCGGTATAGAAAATCTACATATTTTAACTTCAGGAATAAAGCCACCTAATCCCTCAGAGTTATTATCTTCTA
AAAAAATGAAAAAATTTATAGAGATGAGTAAAGAACATTATGATTATATAATATTAGATACCCCACCTGTAGGAGTGGTT
ACAGATGCTCAATTGGTATCCCAGTATTCAGATGGAGGGATATTAGTTACAGCTTCTGGACAGGTTGAAAGAGAATTAGC
TATAAGAGCAAAACAACTTTTACAAAAAGTCAATGCAAAAATACTAGGAGTAGTATTAAATAAGGTAGATACAAGCTCTG
GGAATGGATACAGATATTACAATTATTATTATGAAGAAGATGGAAAAAAGAAAAAAAGAAGCAAAAAATAA

Upstream 100 bases:

>100_bases
TGAGAATAAAGAAATAATTAGAAGTTATAGCAAAATAGAAAGGAAAAAAAATATATTTAGCTTTCTAAAAAATATGATTT
AACATTGGAGTGATTACAAG

Downstream 100 bases:

>100_bases
AAGCTTAAGAAAGTGGTGTTATCACCACTTTAAAAAACAAAAAAATAAGGGTTAAATATGAACTTCAATAATAATAAAAA
ATATATAAAAATAAGACTTG

Product: capsular exopolysaccharide family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MDRNLSLITIKEPKSPISEAYRTLRTNIQFSSFDEKISVIFVTSSTPGEGKSTTSANLAITMAQNGSETILVDCDLRKPN
VHKLFKLSNTRGLSNLLIEDNGIDKVIQQSGIENLHILTSGIKPPNPSELLSSKKMKKFIEMSKEHYDYIILDTPPVGVV
TDAQLVSQYSDGGILVTASGQVERELAIRAKQLLQKVNAKILGVVLNKVDTSSGNGYRYYNYYYEEDGKKKKRSKK

Sequences:

>Translated_236_residues
MDRNLSLITIKEPKSPISEAYRTLRTNIQFSSFDEKISVIFVTSSTPGEGKSTTSANLAITMAQNGSETILVDCDLRKPN
VHKLFKLSNTRGLSNLLIEDNGIDKVIQQSGIENLHILTSGIKPPNPSELLSSKKMKKFIEMSKEHYDYIILDTPPVGVV
TDAQLVSQYSDGGILVTASGQVERELAIRAKQLLQKVNAKILGVVLNKVDTSSGNGYRYYNYYYEEDGKKKKRSKK
>Mature_236_residues
MDRNLSLITIKEPKSPISEAYRTLRTNIQFSSFDEKISVIFVTSSTPGEGKSTTSANLAITMAQNGSETILVDCDLRKPN
VHKLFKLSNTRGLSNLLIEDNGIDKVIQQSGIENLHILTSGIKPPNPSELLSSKKMKKFIEMSKEHYDYIILDTPPVGVV
TDAQLVSQYSDGGILVTASGQVERELAIRAKQLLQKVNAKILGVVLNKVDTSSGNGYRYYNYYYEEDGKKKKRSKK

Specific function: May be involved in the regulation of capsular polysaccharide biosynthesis. Autophosphorylates in vitro. Phosphorylates and activates in vitro two UDP-glucose dehydrogenases, YwqF and TuaD, as well as the DNA-binding proteins Ssb and SsbB [H]

COG id: COG0489

COG function: function code D; ATPases involved in chromosome partitioning

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpsD/CapB family [H]

Homologues:

Organism=Escherichia coli, GI1787216, Length=208, Percent_Identity=34.6153846153846, Blast_Score=142, Evalue=1e-35,
Organism=Escherichia coli, GI87082032, Length=230, Percent_Identity=31.304347826087, Blast_Score=132, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002586
- InterPro:   IPR005702 [H]

Pfam domain/function: PF01656 CbiA [H]

EC number: =2.7.10.2 [H]

Molecular weight: Translated: 26262; Mature: 26262

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRNLSLITIKEPKSPISEAYRTLRTNIQFSSFDEKISVIFVTSSTPGEGKSTTSANLAI
CCCCEEEEEEECCCCHHHHHHHHHHHCCEECCCCCEEEEEEEECCCCCCCCCCCCCEEEE
TMAQNGSETILVDCDLRKPNVHKLFKLSNTRGLSNLLIEDNGIDKVIQQSGIENLHILTS
EEECCCCCEEEEEECCCCCCHHHHEEECCCCCCEEEEEECCCHHHHHHHCCCCEEEEEEC
GIKPPNPSELLSSKKMKKFIEMSKEHYDYIILDTPPVGVVTDAQLVSQYSDGGILVTASG
CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECHHHHHHCCCCCEEEEECC
QVERELAIRAKQLLQKVNAKILGVVLNKVDTSSGNGYRYYNYYYEEDGKKKKRSKK
CHHHHHHHHHHHHHHHHCHHHEEHHHHHCCCCCCCCEEEEEEEEECCCCHHHCCCC
>Mature Secondary Structure
MDRNLSLITIKEPKSPISEAYRTLRTNIQFSSFDEKISVIFVTSSTPGEGKSTTSANLAI
CCCCEEEEEEECCCCHHHHHHHHHHHCCEECCCCCEEEEEEEECCCCCCCCCCCCCEEEE
TMAQNGSETILVDCDLRKPNVHKLFKLSNTRGLSNLLIEDNGIDKVIQQSGIENLHILTS
EEECCCCCEEEEEECCCCCCHHHHEEECCCCCCEEEEEECCCHHHHHHHCCCCEEEEEEC
GIKPPNPSELLSSKKMKKFIEMSKEHYDYIILDTPPVGVVTDAQLVSQYSDGGILVTASG
CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEECHHHHHHCCCCCEEEEECC
QVERELAIRAKQLLQKVNAKILGVVLNKVDTSSGNGYRYYNYYYEEDGKKKKRSKK
CHHHHHHHHHHHHHHHHCHHHEEHHHHHCCCCCCCCEEEEEEEEECCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]