Definition Clostridium botulinum B1 str. Okra, complete genome.
Accession NC_010516
Length 3,958,233

Click here to switch to the map view.

The map label for this gene is 170757256

Identifier: 170757256

GI number: 170757256

Start: 2211971

End: 2212645

Strand: Reverse

Name: 170757256

Synonym: CLD_2566

Alternate gene names: NA

Gene position: 2212645-2211971 (Counterclockwise)

Preceding gene: 170757723

Following gene: 170756926

Centisome position: 55.9

GC content: 31.56

Gene sequence:

>675_bases
GTGTTACTAATTAGATATTTAATTGCCTATATTCGTACATGTATTATGTATGTTGCTCATACTGATTATTTAATTAACAT
TATTCGCATATGTATTTTATGTATTGTATTTCAAAAAGGATTTTATCTAAGGGCTAAGAAGAGGGAAGGAGGAGTTTCCC
GTAAGCATCTTCTATGGGTATTTATCTTTTTATTGTATCTGGCAGCTGTTTATGGCGTAACGGGTATAGGAACAATTTGG
GATGTGCAAAGGTTTGTTACCGCATCTACATCTGAATTTGATCGAATTTATTTAGTTCCATTCTCTAGTTCTGAGGTAAT
CATGCCGTATGTTTTGAATATTATAATGACGATACCATTAGGATTCTTGTTACCATTGATTTGGAAACAATTTCGAACAA
TTAAAAAGGTTGCCTTGTCGGGATTTTTGTTATCCTTATGTATTGAGTTAAGTCAATTGTTCACTCAAAGTCGAACCACA
ACGACAGATGATTTAATTATGAACACCCTAGGAGCTATTATCGGATATTTCATCTTTAAAGCATTCTTTCACATCATCTT
GAAAAAAAATAGCAACGAAAAAGATGAAATAACATCATCTTCAGTTGTCATCAAACACGAAGCAATCTTTTATTTAGTAT
TATCATTTTTGGGAATGTTTTTATTTGCTATTTAG

Upstream 100 bases:

>100_bases
TCAGAAAGTCTTAAGATTGTATTCACTTATTCTTAAATTTTTGTTGATATTATAATCATGCCAATAATTAAATTTTGATT
CAACAACAAGGAGGACTATT

Downstream 100 bases:

>100_bases
GGTTTTTCGCCATCAATAATACTTGATAAAAAATAAAATCAATATATTATAAATATAATCATTAACAATTGTAATTTAAG
TTGATGTTTACAAGAAGGAA

Product: vanZF protein

Products: NA

Alternate protein names: Teicoplanin Resistance Protein; VanZF Protein; VanZ Protein; VanZ Like Protein

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MLLIRYLIAYIRTCIMYVAHTDYLINIIRICILCIVFQKGFYLRAKKREGGVSRKHLLWVFIFLLYLAAVYGVTGIGTIW
DVQRFVTASTSEFDRIYLVPFSSSEVIMPYVLNIIMTIPLGFLLPLIWKQFRTIKKVALSGFLLSLCIELSQLFTQSRTT
TTDDLIMNTLGAIIGYFIFKAFFHIILKKNSNEKDEITSSSVVIKHEAIFYLVLSFLGMFLFAI

Sequences:

>Translated_224_residues
MLLIRYLIAYIRTCIMYVAHTDYLINIIRICILCIVFQKGFYLRAKKREGGVSRKHLLWVFIFLLYLAAVYGVTGIGTIW
DVQRFVTASTSEFDRIYLVPFSSSEVIMPYVLNIIMTIPLGFLLPLIWKQFRTIKKVALSGFLLSLCIELSQLFTQSRTT
TTDDLIMNTLGAIIGYFIFKAFFHIILKKNSNEKDEITSSSVVIKHEAIFYLVLSFLGMFLFAI
>Mature_224_residues
MLLIRYLIAYIRTCIMYVAHTDYLINIIRICILCIVFQKGFYLRAKKREGGVSRKHLLWVFIFLLYLAAVYGVTGIGTIW
DVQRFVTASTSEFDRIYLVPFSSSEVIMPYVLNIIMTIPLGFLLPLIWKQFRTIKKVALSGFLLSLCIELSQLFTQSRTT
TTDDLIMNTLGAIIGYFIFKAFFHIILKKNSNEKDEITSSSVVIKHEAIFYLVLSFLGMFLFAI

Specific function: Unknown

COG id: COG4767

COG function: function code V; Glycopeptide antibiotics resistance protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25832; Mature: 25832

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLIRYLIAYIRTCIMYVAHTDYLINIIRICILCIVFQKGFYLRAKKREGGVSRKHLLWV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
FIFLLYLAAVYGVTGIGTIWDVQRFVTASTSEFDRIYLVPFSSSEVIMPYVLNIIMTIPL
HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
GFLLPLIWKQFRTIKKVALSGFLLSLCIELSQLFTQSRTTTTDDLIMNTLGAIIGYFIFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
AFFHIILKKNSNEKDEITSSSVVIKHEAIFYLVLSFLGMFLFAI
HHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MLLIRYLIAYIRTCIMYVAHTDYLINIIRICILCIVFQKGFYLRAKKREGGVSRKHLLWV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH
FIFLLYLAAVYGVTGIGTIWDVQRFVTASTSEFDRIYLVPFSSSEVIMPYVLNIIMTIPL
HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
GFLLPLIWKQFRTIKKVALSGFLLSLCIELSQLFTQSRTTTTDDLIMNTLGAIIGYFIFK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
AFFHIILKKNSNEKDEITSSSVVIKHEAIFYLVLSFLGMFLFAI
HHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA