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The map label for this gene is yjcD [H]

Identifier: 170757205

GI number: 170757205

Start: 1580979

End: 1582991

Strand: Direct

Name: yjcD [H]

Synonym: CLD_3123

Alternate gene names: 170757205

Gene position: 1580979-1582991 (Clockwise)

Preceding gene: 170756606

Following gene: 170754663

Centisome position: 39.94

GC content: 25.43

Gene sequence:

>2013_bases
ATGATAGATTATAGTTTCTTAGATCAGTATCAAAAGGAAGCGGTTAAATGTCATAAGGATAATACATTAGTAGTAGCTCC
ACCTGGTTCCGGTAAAACTACTGTTATTATAAATAGAGTTGTGCATTTGATAGAGGATTTAAAAATAAATCCTAATAATA
TATTAGTAATAACTTTTACTAGGGCTGCAGCTATGAATATGAAGGAAAGATATAAAAAAATAAGTGTCAGTAGGAGAACA
CCTTTTTTTGGAACATTTCATGGCCTTTTTTATAAAATATTGAACAGACACTTTAAAAATATAAATATAATAAGTAGCAA
GGAAGCCTATTCTCTAATAAATAATATACTTATATCTTATTTGGATTCTGTAAATGAGGATAAGGTAAGAGACGTTTTAA
ATGATATATCACTTTTTAAAACTAGTGGGTTAAATATGAAGGATTTCGTTCCTAAAATTGATAAAAGTATATTTGAACAC
TGTTTTAATAGCTATGAAGAGTATAAAGATAAAAAAGAACTTTTAGATTTTGATGATTTGCAAATTAATATGTTTAAACT
TTTAAAGGAAGATGAAAGAATTCTTAAGGGTTATAATAAATTATTTAAATATATATTAGTAGATGAATTTCAAGATTGTG
ATACATTGCAAATAAATATTCTTCAAATGTTAAGTGAGGGGAATTCTCTATTCGCAGTAGGGGATGAGGATCAGTGTATA
TATTCATTTAGAGGATCCAAGCCAGAGTGTATGGTAGATTTTAATCATTATTTTAAAAAAGGAGAAAAGATATATCTAAG
ATATAATTATAGAAGCCCCAAAAATATAGTAGAGATTTCTAAAAATCTTATTAAAAATAATAAATTAAGAAATAATAAGA
GAATAGAAGCTTATAATGATTATGATAAGAATATAGTGTTAAAATCCTTTCTAAATGAAAGGGAGCAAGCAGAGGAAATA
AGTAAAATAATTAATGATATTATAAAGAAGGGCTATGGATATAAAGATGTAGCCATACTTTATAGGACTAATATGGAAAG
TAGAAGTTTAACAGATTTGTTTTTTAAAAAAAGAATACCTTTTAGACTTTTAGATAAGGGTTATAATTTTTTTAATCATT
TTGTATGTAGGGATATACTAGCTTATATGCAGGTTTGTATAGATTCCTATGATAAGAAAAGTTTTTTAAAGATTATAAAT
AAACCCTTTAGGTATATAAGTAAATTAAATGTGGAAAGGGTAAGAAGATATAAATATGCTAAAAATAGCTTTGATATATT
AAAGGAACAAAAGGATATACAACCTTTTCAAATTAAGAATTTAGAAGATCTTGAAAAGGATATAAACAAAATGAATAAAA
TGAGTGCCCAAGATGCCATAGGTCACATAATCCATAATTTAGGCTATGAAGAGTATATTAAAGAATATAGTGAAAGAATA
AAAATAGATAAAGAAGAACTTTTACAAATAGTAGATGAATTAAAAGAAGCAGCTGAAGAATATACAAGTATTTTAACCTT
TTTAGTTCATGTAGAGGAAGTAGAAAAAGAAATAAATAAAAAAGAAATAAATGAAGATAGTGTAATATTAAGTACAATAC
ATGGAGTTAAGGGCATGGAATTTAAAAATGTAGTTATTGTGAATTGTAATGAAGGTAATATTCCTTACAGTAAAGCAGAT
GAAGAAGTTAATATAGAGGAAGAGAGAAGACTTTTTTATGTAGGTATAACAAGGGCAAAAGAAAACTTATATTTAACTGT
ACCAAAGGTTATAAGAGGGAAAAATAAAGAAAACTCTAATTTTATAAAGGAATGCAAGTTAGATAAAGAATTATTAGAAA
ATGATTATTTTAAAGGAAAAGAAATAGTGATTCATAAGGTATTTGGTGAAGGAATCATTGAAAATCAAGGGGAAAATTAT
GTGGAGATAGGGTTTTTAGATGGAACTAAAAGAAAATTTGATAGAAATGTTATAACTAAAAGTAATATTATTAAAAAGAA
AAGTGTATCATAA

Upstream 100 bases:

>100_bases
TTATAAATAATAGTAAATGTTGTTATTGTAAATTTGATATTTTCTTTAGCTTCTAGTAAAGTATACTTAATTAACATTAG
AAAGTTAAGGGAGTTTTTAT

Downstream 100 bases:

>100_bases
AAAATTTATTTTAGTAATAAATAAACTTCTATTCTAAATATATAAGTAGCAAATCTTATATTATACACATAATAATATAA
GGAAAACCTGATAAAATGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 670; Mature: 670

Protein sequence:

>670_residues
MIDYSFLDQYQKEAVKCHKDNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFTRAAAMNMKERYKKISVSRRT
PFFGTFHGLFYKILNRHFKNINIISSKEAYSLINNILISYLDSVNEDKVRDVLNDISLFKTSGLNMKDFVPKIDKSIFEH
CFNSYEEYKDKKELLDFDDLQINMFKLLKEDERILKGYNKLFKYILVDEFQDCDTLQINILQMLSEGNSLFAVGDEDQCI
YSFRGSKPECMVDFNHYFKKGEKIYLRYNYRSPKNIVEISKNLIKNNKLRNNKRIEAYNDYDKNIVLKSFLNEREQAEEI
SKIINDIIKKGYGYKDVAILYRTNMESRSLTDLFFKKRIPFRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKKSFLKIIN
KPFRYISKLNVERVRRYKYAKNSFDILKEQKDIQPFQIKNLEDLEKDINKMNKMSAQDAIGHIIHNLGYEEYIKEYSERI
KIDKEELLQIVDELKEAAEEYTSILTFLVHVEEVEKEINKKEINEDSVILSTIHGVKGMEFKNVVIVNCNEGNIPYSKAD
EEVNIEEERRLFYVGITRAKENLYLTVPKVIRGKNKENSNFIKECKLDKELLENDYFKGKEIVIHKVFGEGIIENQGENY
VEIGFLDGTKRKFDRNVITKSNIIKKKSVS

Sequences:

>Translated_670_residues
MIDYSFLDQYQKEAVKCHKDNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFTRAAAMNMKERYKKISVSRRT
PFFGTFHGLFYKILNRHFKNINIISSKEAYSLINNILISYLDSVNEDKVRDVLNDISLFKTSGLNMKDFVPKIDKSIFEH
CFNSYEEYKDKKELLDFDDLQINMFKLLKEDERILKGYNKLFKYILVDEFQDCDTLQINILQMLSEGNSLFAVGDEDQCI
YSFRGSKPECMVDFNHYFKKGEKIYLRYNYRSPKNIVEISKNLIKNNKLRNNKRIEAYNDYDKNIVLKSFLNEREQAEEI
SKIINDIIKKGYGYKDVAILYRTNMESRSLTDLFFKKRIPFRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKKSFLKIIN
KPFRYISKLNVERVRRYKYAKNSFDILKEQKDIQPFQIKNLEDLEKDINKMNKMSAQDAIGHIIHNLGYEEYIKEYSERI
KIDKEELLQIVDELKEAAEEYTSILTFLVHVEEVEKEINKKEINEDSVILSTIHGVKGMEFKNVVIVNCNEGNIPYSKAD
EEVNIEEERRLFYVGITRAKENLYLTVPKVIRGKNKENSNFIKECKLDKELLENDYFKGKEIVIHKVFGEGIIENQGENY
VEIGFLDGTKRKFDRNVITKSNIIKKKSVS
>Mature_670_residues
MIDYSFLDQYQKEAVKCHKDNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFTRAAAMNMKERYKKISVSRRT
PFFGTFHGLFYKILNRHFKNINIISSKEAYSLINNILISYLDSVNEDKVRDVLNDISLFKTSGLNMKDFVPKIDKSIFEH
CFNSYEEYKDKKELLDFDDLQINMFKLLKEDERILKGYNKLFKYILVDEFQDCDTLQINILQMLSEGNSLFAVGDEDQCI
YSFRGSKPECMVDFNHYFKKGEKIYLRYNYRSPKNIVEISKNLIKNNKLRNNKRIEAYNDYDKNIVLKSFLNEREQAEEI
SKIINDIIKKGYGYKDVAILYRTNMESRSLTDLFFKKRIPFRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKKSFLKIIN
KPFRYISKLNVERVRRYKYAKNSFDILKEQKDIQPFQIKNLEDLEKDINKMNKMSAQDAIGHIIHNLGYEEYIKEYSERI
KIDKEELLQIVDELKEAAEEYTSILTFLVHVEEVEKEINKKEINEDSVILSTIHGVKGMEFKNVVIVNCNEGNIPYSKAD
EEVNIEEERRLFYVGITRAKENLYLTVPKVIRGKNKENSNFIKECKLDKELLENDYFKGKEIVIHKVFGEGIIENQGENY
VEIGFLDGTKRKFDRNVITKSNIIKKKSVS

Specific function: May be involved in the generation of recombinogenic substrates for the subsequent action of recA [H]

COG id: COG0210

COG function: function code L; Superfamily I DNA and RNA helicases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI48994965, Length=654, Percent_Identity=30.5810397553517, Blast_Score=262, Evalue=5e-71,
Organism=Escherichia coli, GI2367296, Length=689, Percent_Identity=28.4470246734398, Blast_Score=258, Evalue=6e-70,
Organism=Escherichia coli, GI1787196, Length=361, Percent_Identity=26.5927977839335, Blast_Score=97, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6322369, Length=469, Percent_Identity=28.7846481876333, Blast_Score=134, Evalue=3e-32,
Organism=Saccharomyces cerevisiae, GI6324477, Length=636, Percent_Identity=22.9559748427673, Blast_Score=101, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014017
- InterPro:   IPR000212
- InterPro:   IPR014016 [H]

Pfam domain/function: PF00580 UvrD-helicase [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 78967; Mature: 78967

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDYSFLDQYQKEAVKCHKDNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFT
CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCEECCCCEEEEEEC
RAAAMNMKERYKKISVSRRTPFFGTFHGLFYKILNRHFKNINIISSKEAYSLINNILISY
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHH
LDSVNEDKVRDVLNDISLFKTSGLNMKDFVPKIDKSIFEHCFNSYEEYKDKKELLDFDDL
HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC
QINMFKLLKEDERILKGYNKLFKYILVDEFQDCDTLQINILQMLSEGNSLFAVGDEDQCI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEE
YSFRGSKPECMVDFNHYFKKGEKIYLRYNYRSPKNIVEISKNLIKNNKLRNNKRIEAYND
EEECCCCCCEEEEHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEECC
YDKNIVLKSFLNEREQAEEISKIINDIIKKGYGYKDVAILYRTNMESRSLTDLFFKKRIP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCC
FRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKKSFLKIINKPFRYISKLNVERVRRYKYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
KNSFDILKEQKDIQPFQIKNLEDLEKDINKMNKMSAQDAIGHIIHNLGYEEYIKEYSERI
CCHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
KIDKEELLQIVDELKEAAEEYTSILTFLVHVEEVEKEINKKEINEDSVILSTIHGVKGME
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
FKNVVIVNCNEGNIPYSKADEEVNIEEERRLFYVGITRAKENLYLTVPKVIRGKNKENSN
CCCEEEEECCCCCCCCCCCCCCCCCHHHCEEEEEEEEECCCCEEEEECHHHCCCCCCCCH
FIKECKLDKELLENDYFKGKEIVIHKVFGEGIIENQGENYVEIGFLDGTKRKFDRNVITK
HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHCCHHHH
SNIIKKKSVS
HHHCCCCCCC
>Mature Secondary Structure
MIDYSFLDQYQKEAVKCHKDNTLVVAPPGSGKTTVIINRVVHLIEDLKINPNNILVITFT
CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCEECCCCEEEEEEC
RAAAMNMKERYKKISVSRRTPFFGTFHGLFYKILNRHFKNINIISSKEAYSLINNILISY
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHH
LDSVNEDKVRDVLNDISLFKTSGLNMKDFVPKIDKSIFEHCFNSYEEYKDKKELLDFDDL
HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCC
QINMFKLLKEDERILKGYNKLFKYILVDEFQDCDTLQINILQMLSEGNSLFAVGDEDQCI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCCEE
YSFRGSKPECMVDFNHYFKKGEKIYLRYNYRSPKNIVEISKNLIKNNKLRNNKRIEAYND
EEECCCCCCEEEEHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEECC
YDKNIVLKSFLNEREQAEEISKIINDIIKKGYGYKDVAILYRTNMESRSLTDLFFKKRIP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCC
FRLLDKGYNFFNHFVCRDILAYMQVCIDSYDKKSFLKIINKPFRYISKLNVERVRRYKYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
KNSFDILKEQKDIQPFQIKNLEDLEKDINKMNKMSAQDAIGHIIHNLGYEEYIKEYSERI
CCHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
KIDKEELLQIVDELKEAAEEYTSILTFLVHVEEVEKEINKKEINEDSVILSTIHGVKGME
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
FKNVVIVNCNEGNIPYSKADEEVNIEEERRLFYVGITRAKENLYLTVPKVIRGKNKENSN
CCCEEEEECCCCCCCCCCCCCCCCCHHHCEEEEEEEEECCCCEEEEECHHHCCCCCCCCH
FIKECKLDKELLENDYFKGKEIVIHKVFGEGIIENQGENYVEIGFLDGTKRKFDRNVITK
HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHCCHHHH
SNIIKKKSVS
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]