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The map label for this gene is ymdB [C]

Identifier: 170757183

GI number: 170757183

Start: 2446506

End: 2447048

Strand: Reverse

Name: ymdB [C]

Synonym: CLD_2328

Alternate gene names: 170757183

Gene position: 2447048-2446506 (Counterclockwise)

Preceding gene: 170756144

Following gene: 170756057

Centisome position: 61.82

GC content: 30.57

Gene sequence:

>543_bases
TTGTCTATATCATATATAAATAAAATAAAGATAATAAAGGGTGATATTACAAAAGAAAATGTAAATGCTATTGTTAATGC
TGCAAATAGTAGTTTACTTGGAGGTGGGGGTGTAGATGGAGCCATTCATAGAGCAGGTGGGAATAAGATACTTGAGGAAT
GTAAAATTATTGTCAGTAAAATAGGTCAATTAAAGACAGGAGAAGCAGTGATAACTTCTGGAGGAAATCTTAAGGCTAAA
TATGTTATTCATACTGTAGGACCTATATGGCATGGAGGAAAGAGTAATGAAGAAACTCTTTTAGCTAATGCCTATAAAAA
TAGCTTAAAATTAGCTGCTGAAAAAAATATTAAAACTATTGCTTTCCCTAACATAAGCACAGGGGTGTATAGATATCCTA
AAAATCAGGCAGCAAAGGTTGCCTATAATTCAGTAAAAGAGAGCTTAATAAAATATGAAAATATAGAAGAAGTAAGATTT
GTATGTTTTGATGAGTACAATTATAAATTATATCGGGATTTACTATTTGCTGATACCAAATAA

Upstream 100 bases:

>100_bases
GAGGAATAATCAAGTTTACACAGAATTATGTAATATTATGGAAGTTGCTATTGATAATATGATACTAAGTAATAAAAAAT
ATATGTAAGGGGGTTATATT

Downstream 100 bases:

>100_bases
GAGTTTTTTATAGCGGTTTACTACTAATTATTTATTAGTAAAACAATGTTAAAAAGTATCACGGATTTAAATCTGAGTTT
ATAAATGGTAGAAAAAGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MSISYINKIKIIKGDITKENVNAIVNAANSSLLGGGGVDGAIHRAGGNKILEECKIIVSKIGQLKTGEAVITSGGNLKAK
YVIHTVGPIWHGGKSNEETLLANAYKNSLKLAAEKNIKTIAFPNISTGVYRYPKNQAAKVAYNSVKESLIKYENIEEVRF
VCFDEYNYKLYRDLLFADTK

Sequences:

>Translated_180_residues
MSISYINKIKIIKGDITKENVNAIVNAANSSLLGGGGVDGAIHRAGGNKILEECKIIVSKIGQLKTGEAVITSGGNLKAK
YVIHTVGPIWHGGKSNEETLLANAYKNSLKLAAEKNIKTIAFPNISTGVYRYPKNQAAKVAYNSVKESLIKYENIEEVRF
VCFDEYNYKLYRDLLFADTK
>Mature_179_residues
SISYINKIKIIKGDITKENVNAIVNAANSSLLGGGGVDGAIHRAGGNKILEECKIIVSKIGQLKTGEAVITSGGNLKAKY
VIHTVGPIWHGGKSNEETLLANAYKNSLKLAAEKNIKTIAFPNISTGVYRYPKNQAAKVAYNSVKESLIKYENIEEVRFV
CFDEYNYKLYRDLLFADTK

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=173, Percent_Identity=50.2890173410405, Blast_Score=156, Evalue=8e-39,
Organism=Homo sapiens, GI13569840, Length=171, Percent_Identity=46.7836257309941, Blast_Score=147, Evalue=7e-36,
Organism=Homo sapiens, GI226371710, Length=160, Percent_Identity=36.25, Blast_Score=97, Evalue=7e-21,
Organism=Homo sapiens, GI226371706, Length=160, Percent_Identity=36.25, Blast_Score=97, Evalue=7e-21,
Organism=Homo sapiens, GI226371716, Length=160, Percent_Identity=36.25, Blast_Score=97, Evalue=9e-21,
Organism=Homo sapiens, GI226371714, Length=160, Percent_Identity=36.25, Blast_Score=97, Evalue=9e-21,
Organism=Homo sapiens, GI226371712, Length=160, Percent_Identity=36.25, Blast_Score=97, Evalue=9e-21,
Organism=Homo sapiens, GI226371718, Length=160, Percent_Identity=36.25, Blast_Score=96, Evalue=1e-20,
Organism=Homo sapiens, GI20336746, Length=167, Percent_Identity=31.7365269461078, Blast_Score=94, Evalue=6e-20,
Organism=Homo sapiens, GI8923143, Length=159, Percent_Identity=34.5911949685535, Blast_Score=87, Evalue=6e-18,
Organism=Homo sapiens, GI207450721, Length=159, Percent_Identity=34.5911949685535, Blast_Score=87, Evalue=7e-18,
Organism=Homo sapiens, GI154813199, Length=138, Percent_Identity=34.7826086956522, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI93141018, Length=153, Percent_Identity=32.0261437908497, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI93141020, Length=153, Percent_Identity=32.0261437908497, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI4758496, Length=153, Percent_Identity=32.0261437908497, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI8923920, Length=170, Percent_Identity=28.2352941176471, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI165377137, Length=140, Percent_Identity=32.1428571428571, Blast_Score=66, Evalue=1e-11,
Organism=Escherichia coli, GI1787283, Length=169, Percent_Identity=52.6627218934911, Blast_Score=190, Evalue=5e-50,
Organism=Caenorhabditis elegans, GI17538214, Length=170, Percent_Identity=48.8235294117647, Blast_Score=133, Evalue=5e-32,
Organism=Drosophila melanogaster, GI24586353, Length=146, Percent_Identity=34.9315068493151, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 19729; Mature: 19598

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISYINKIKIIKGDITKENVNAIVNAANSSLLGGGGVDGAIHRAGGNKILEECKIIVSK
CCCCCCEEEEEEECCCCHHHHHHHHCCCCCCEECCCCCCCEEEECCCHHHHHHHHHHHHH
IGQLKTGEAVITSGGNLKAKYVIHTVGPIWHGGKSNEETLLANAYKNSLKLAAEKNIKTI
HCCCCCCCEEEECCCCEEEEEEEEECCCEECCCCCCCCEEEHHHHHHHEEEEECCCEEEE
AFPNISTGVYRYPKNQAAKVAYNSVKESLIKYENIEEVRFVCFDEYNYKLYRDLLFADTK
ECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCC
>Mature Secondary Structure 
SISYINKIKIIKGDITKENVNAIVNAANSSLLGGGGVDGAIHRAGGNKILEECKIIVSK
CCCCCEEEEEEECCCCHHHHHHHHCCCCCCEECCCCCCCEEEECCCHHHHHHHHHHHHH
IGQLKTGEAVITSGGNLKAKYVIHTVGPIWHGGKSNEETLLANAYKNSLKLAAEKNIKTI
HCCCCCCCEEEECCCCEEEEEEEEECCCEECCCCCCCCEEEHHHHHHHEEEEECCCEEEE
AFPNISTGVYRYPKNQAAKVAYNSVKESLIKYENIEEVRFVCFDEYNYKLYRDLLFADTK
ECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA