| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is pheB
Identifier: 170756999
GI number: 170756999
Start: 3259367
End: 3259804
Strand: Reverse
Name: pheB
Synonym: CLD_1535
Alternate gene names: NA
Gene position: 3259804-3259367 (Counterclockwise)
Preceding gene: 170756009
Following gene: 170756268
Centisome position: 82.36
GC content: 26.26
Gene sequence:
>438_bases ATGCCTAATAAATTTTTAATTATAGATAATAGCATACTTCCGGATATTTTTGAAAAGGTTGTAAAAGTAAAAGAACTTTT AGCTAATGGAAAAGTAAAAGATATAACAGAAGGTGTAAAAACAGTAGGAATTAGTAGAAGTACTTATTATAAATATAAAG ATTTTGTATTTTCTGTATCTGAAGGTGTGAAAAGTCAAAAGGCAACTATAGGATTATTACTAGGACATGAAAGGGGAACT CTTTCTAAAATATTAGATAGAATAGCAGAGTATCAGGGGAATATACTTACTATAAATCAAGATATACCTATAAATAATAC TGCAAATGTAAGCATTACCTTTGATATATCGCAAATGAGTATAGGATTAAAAGAATTAGTTGAGGAAATAAAAAATACTA AAAATGTAATAAAAGTGGATTTGATAGCTATGGAATAA
Upstream 100 bases:
>100_bases CTTATCTAGAACTTTATTTATTAAAAAAAATATATATGGTATAATTATATAAATTATATAAAAGTTAATTTATTAAGAAA AGATTGTGGGAGGAGTTTTT
Downstream 100 bases:
>100_bases TAAAAAACTTCATCTTTTTAGCAGATGAAGTTTTTTATTTACTACAGGTTGAATATAATTAAATTATAAGGTCCCCTACA ATAACTGTTATGGCTGAACC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MPNKFLIIDNSILPDIFEKVVKVKELLANGKVKDITEGVKTVGISRSTYYKYKDFVFSVSEGVKSQKATIGLLLGHERGT LSKILDRIAEYQGNILTINQDIPINNTANVSITFDISQMSIGLKELVEEIKNTKNVIKVDLIAME
Sequences:
>Translated_145_residues MPNKFLIIDNSILPDIFEKVVKVKELLANGKVKDITEGVKTVGISRSTYYKYKDFVFSVSEGVKSQKATIGLLLGHERGT LSKILDRIAEYQGNILTINQDIPINNTANVSITFDISQMSIGLKELVEEIKNTKNVIKVDLIAME >Mature_144_residues PNKFLIIDNSILPDIFEKVVKVKELLANGKVKDITEGVKTVGISRSTYYKYKDFVFSVSEGVKSQKATIGLLLGHERGTL SKILDRIAEYQGNILTINQDIPINNTANVSITFDISQMSIGLKELVEEIKNTKNVIKVDLIAME
Specific function: Unknown
COG id: COG4492
COG function: function code R; ACT domain-containing protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0735 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1535_CLOBK (B1IM08)
Other databases:
- EMBL: CP000939 - RefSeq: YP_001782642.1 - GeneID: 6148469 - GenomeReviews: CP000939_GR - KEGG: cbb:CLD_1535 - HOGENOM: HBG305529 - OMA: TIPLQGR - ProtClustDB: PRK04435 - BioCyc: CBOT498213:CLD_1535-MONOMER - HAMAP: MF_00707 - InterPro: IPR008310 - PIRSF: PIRSF025624
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16173; Mature: 16042
Theoretical pI: Translated: 8.83; Mature: 8.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNKFLIIDNSILPDIFEKVVKVKELLANGKVKDITEGVKTVGISRSTYYKYKDFVFSVS CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH EGVKSQKATIGLLLGHERGTLSKILDRIAEYQGNILTINQDIPINNTANVSITFDISQMS HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEHHHHH IGLKELVEEIKNTKNVIKVDLIAME CCHHHHHHHHHCCCCEEEEEEEEEC >Mature Secondary Structure PNKFLIIDNSILPDIFEKVVKVKELLANGKVKDITEGVKTVGISRSTYYKYKDFVFSVS CCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH EGVKSQKATIGLLLGHERGTLSKILDRIAEYQGNILTINQDIPINNTANVSITFDISQMS HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEHHHHH IGLKELVEEIKNTKNVIKVDLIAME CCHHHHHHHHHCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA