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The map label for this gene is ydiU [C]

Identifier: 170756943

GI number: 170756943

Start: 1324718

End: 1326193

Strand: Direct

Name: ydiU [C]

Synonym: CLD_3372

Alternate gene names: 170756943

Gene position: 1324718-1326193 (Clockwise)

Preceding gene: 170754248

Following gene: 170754724

Centisome position: 33.47

GC content: 37.47

Gene sequence:

>1476_bases
ATGGAAGAAAGAAAAGTAATAATAAAAACAGGCTTGAATTTAGAAAATAGCTATACTAGCCTTCCAGAAATATTCTTTAC
TAGACAAAACCCAAACCGTGTACCTTCACCAAAATTAGCTGTATTGAATTATCCATTAATAACATCCTTGGGACTAAATG
CCCAAGTATTACAAAGTACTGATGGAGTAGATATACTTGCAGGAAACAAGACTCCAGAAGAGGCTATACCTATATCTCAA
GCATATGCAGGACATCAATTTGGTCATTTTACCATGTTGGGTGATGGAAGAGCTATTCTTTTAGGGGAACATATCACTCC
ACAAGGTGAGAGATTTGATATTCAGCTTAAGGGTTCAGGTAAAACTCCGTATTCACGAGGAGGAGATGGGAAAGCTGCAT
TAGGTCCGATGCTAAGAGAATATATTATAAGTGAGGCAATGAATGCATTAGGAATTCCCACCACTCGTAGTCTAGCAGTG
GTTACAACAGGTGAGTCAATAATGCGGGAAACTGAGCTATCCGGTGCAATACTAACTCGTGTAGCTGCTAGTCATATACG
TGTTGGTACATTTGAATACGTTTCAAGATGGGGGACAATTCAAGAGCTTAGAGCCCTAGCTGACTATACTTTGCAAAGAC
ATTTTAAAAAAAGGAATGATAAAGATAATCCTTATCTCTTTTTGCTTCAAGAAGTAATCAAGAAACAGGCTGAGCTTATT
GCAAAATGGCAACTGATTGGTTTTGTTCATGGAGTAATGAATACCGATAATATGACAATTAGTGGAGAAACAATTGATTA
TGGTCCTTGTGCATTCATGGATGTATATGATCCTAAAACTGTATTTAGTTCCATTGATATTTATGGTAGATATGCCTACG
GGAATCAACCTAATATTGCTGCATGGAATCTCGCAAGGCTTGCTGAAACTCTGTTACCATTGTTGCATATTAATCCAAAT
GAGGCCATAAAGATAGCAGAGAACGCGATTTCAGATTTTACTAAGTTGTATAAGAATAATTGGCTTTCTGGAATGAGGGG
AAAACTTGGGATATTTAACGAAGAGCTCGAGGATGAATATCTAATTGAAGATCTTCTAAGTATAATGCATAAGTATGGTG
CAGATTATACCAATACATTCCGCGCATTGACTTTTGACAATATAGAGGATACGGTACTGGGTGGTAAAGTGGAATTTGAT
AAGTGGTATAAGCTATGGCAGGAGAGACTAACAAGACAAGAAGAATCAAAACTTTCTTCAAGGCAGCTTATGAAAAGTAG
TAATCCATCAGTGATCCCACGTAATCACAGGGTAGAAGAAGCATTAGAGGCTGCGGTAAAAGAAGGAGACTATAGTGTAA
TGGAGAAACTTTTAGATGCTCTTTCAAAACCCTATGCTTACTCTAAAGAACAAGATTATTACTCTACACTCCCTGAGCCA
TCAACTTGTTCGTATCAAACCTATTGTGGAACCTAA

Upstream 100 bases:

>100_bases
AAGTTATTACAGAAGTTTATATCTGAAAAATCATAGAAACTATGAGTTTTATTTCATGTAAAAAACCTATATAAAAAATA
AAAGAAGAAAAGGAGATACA

Downstream 100 bases:

>100_bases
TACAAAATGAGCTAGTAAAATATATTAAGTTTTACTAGCTCATTTTATATAAAAATATAATAGAACTCTGAACTTGAAAA
TATATTAATTATATTGTATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MEERKVIIKTGLNLENSYTSLPEIFFTRQNPNRVPSPKLAVLNYPLITSLGLNAQVLQSTDGVDILAGNKTPEEAIPISQ
AYAGHQFGHFTMLGDGRAILLGEHITPQGERFDIQLKGSGKTPYSRGGDGKAALGPMLREYIISEAMNALGIPTTRSLAV
VTTGESIMRETELSGAILTRVAASHIRVGTFEYVSRWGTIQELRALADYTLQRHFKKRNDKDNPYLFLLQEVIKKQAELI
AKWQLIGFVHGVMNTDNMTISGETIDYGPCAFMDVYDPKTVFSSIDIYGRYAYGNQPNIAAWNLARLAETLLPLLHINPN
EAIKIAENAISDFTKLYKNNWLSGMRGKLGIFNEELEDEYLIEDLLSIMHKYGADYTNTFRALTFDNIEDTVLGGKVEFD
KWYKLWQERLTRQEESKLSSRQLMKSSNPSVIPRNHRVEEALEAAVKEGDYSVMEKLLDALSKPYAYSKEQDYYSTLPEP
STCSYQTYCGT

Sequences:

>Translated_491_residues
MEERKVIIKTGLNLENSYTSLPEIFFTRQNPNRVPSPKLAVLNYPLITSLGLNAQVLQSTDGVDILAGNKTPEEAIPISQ
AYAGHQFGHFTMLGDGRAILLGEHITPQGERFDIQLKGSGKTPYSRGGDGKAALGPMLREYIISEAMNALGIPTTRSLAV
VTTGESIMRETELSGAILTRVAASHIRVGTFEYVSRWGTIQELRALADYTLQRHFKKRNDKDNPYLFLLQEVIKKQAELI
AKWQLIGFVHGVMNTDNMTISGETIDYGPCAFMDVYDPKTVFSSIDIYGRYAYGNQPNIAAWNLARLAETLLPLLHINPN
EAIKIAENAISDFTKLYKNNWLSGMRGKLGIFNEELEDEYLIEDLLSIMHKYGADYTNTFRALTFDNIEDTVLGGKVEFD
KWYKLWQERLTRQEESKLSSRQLMKSSNPSVIPRNHRVEEALEAAVKEGDYSVMEKLLDALSKPYAYSKEQDYYSTLPEP
STCSYQTYCGT
>Mature_491_residues
MEERKVIIKTGLNLENSYTSLPEIFFTRQNPNRVPSPKLAVLNYPLITSLGLNAQVLQSTDGVDILAGNKTPEEAIPISQ
AYAGHQFGHFTMLGDGRAILLGEHITPQGERFDIQLKGSGKTPYSRGGDGKAALGPMLREYIISEAMNALGIPTTRSLAV
VTTGESIMRETELSGAILTRVAASHIRVGTFEYVSRWGTIQELRALADYTLQRHFKKRNDKDNPYLFLLQEVIKKQAELI
AKWQLIGFVHGVMNTDNMTISGETIDYGPCAFMDVYDPKTVFSSIDIYGRYAYGNQPNIAAWNLARLAETLLPLLHINPN
EAIKIAENAISDFTKLYKNNWLSGMRGKLGIFNEELEDEYLIEDLLSIMHKYGADYTNTFRALTFDNIEDTVLGGKVEFD
KWYKLWQERLTRQEESKLSSRQLMKSSNPSVIPRNHRVEEALEAAVKEGDYSVMEKLLDALSKPYAYSKEQDYYSTLPEP
STCSYQTYCGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=396, Percent_Identity=39.8989898989899, Blast_Score=265, Evalue=7e-71,
Organism=Escherichia coli, GI1787999, Length=467, Percent_Identity=38.3297644539615, Blast_Score=327, Evalue=1e-90,
Organism=Saccharomyces cerevisiae, GI6325034, Length=333, Percent_Identity=33.6336336336336, Blast_Score=166, Evalue=9e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 55296; Mature: 55296

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEERKVIIKTGLNLENSYTSLPEIFFTRQNPNRVPSPKLAVLNYPLITSLGLNAQVLQST
CCCCEEEEEECCCCCCCCCCCCHHEEECCCCCCCCCCCEEEECCCHHHHCCCCHHHHCCC
DGVDILAGNKTPEEAIPISQAYAGHQFGHFTMLGDGRAILLGEHITPQGERFDIQLKGSG
CCEEEEECCCCCHHHCCCHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCEEEEEEECCC
KTPYSRGGDGKAALGPMLREYIISEAMNALGIPTTRSLAVVTTGESIMRETELSGAILTR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHH
VAASHIRVGTFEYVSRWGTIQELRALADYTLQRHFKKRNDKDNPYLFLLQEVIKKQAELI
HHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
AKWQLIGFVHGVMNTDNMTISGETIDYGPCAFMDVYDPKTVFSSIDIYGRYAYGNQPNIA
HHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHEEEEECCCCCCCH
AWNLARLAETLLPLLHINPNEAIKIAENAISDFTKLYKNNWLSGMRGKLGIFNEELEDEY
HHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
LIEDLLSIMHKYGADYTNTFRALTFDNIEDTVLGGKVEFDKWYKLWQERLTRQEESKLSS
HHHHHHHHHHHHCCCHHHCEEEEEECCCCHHHCCCEECHHHHHHHHHHHHHHHHHHHHHH
RQLMKSSNPSVIPRNHRVEEALEAAVKEGDYSVMEKLLDALSKPYAYSKEQDYYSTLPEP
HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCC
STCSYQTYCGT
CCCCCCCCCCC
>Mature Secondary Structure
MEERKVIIKTGLNLENSYTSLPEIFFTRQNPNRVPSPKLAVLNYPLITSLGLNAQVLQST
CCCCEEEEEECCCCCCCCCCCCHHEEECCCCCCCCCCCEEEECCCHHHHCCCCHHHHCCC
DGVDILAGNKTPEEAIPISQAYAGHQFGHFTMLGDGRAILLGEHITPQGERFDIQLKGSG
CCEEEEECCCCCHHHCCCHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCEEEEEEECCC
KTPYSRGGDGKAALGPMLREYIISEAMNALGIPTTRSLAVVTTGESIMRETELSGAILTR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHH
VAASHIRVGTFEYVSRWGTIQELRALADYTLQRHFKKRNDKDNPYLFLLQEVIKKQAELI
HHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
AKWQLIGFVHGVMNTDNMTISGETIDYGPCAFMDVYDPKTVFSSIDIYGRYAYGNQPNIA
HHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHEEEEECCCCCCCH
AWNLARLAETLLPLLHINPNEAIKIAENAISDFTKLYKNNWLSGMRGKLGIFNEELEDEY
HHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
LIEDLLSIMHKYGADYTNTFRALTFDNIEDTVLGGKVEFDKWYKLWQERLTRQEESKLSS
HHHHHHHHHHHHCCCHHHCEEEEEECCCCHHHCCCEECHHHHHHHHHHHHHHHHHHHHHH
RQLMKSSNPSVIPRNHRVEEALEAAVKEGDYSVMEKLLDALSKPYAYSKEQDYYSTLPEP
HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCC
STCSYQTYCGT
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA