| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is ppdK
Identifier: 170756728
GI number: 170756728
Start: 3189509
End: 3192142
Strand: Reverse
Name: ppdK
Synonym: CLD_1604
Alternate gene names: 170756728
Gene position: 3192142-3189509 (Counterclockwise)
Preceding gene: 170757514
Following gene: 170755081
Centisome position: 80.65
GC content: 33.71
Gene sequence:
>2634_bases ATGGAAAATAAGAAGCATGTGTATCTTTTTAGTGAAGGAAATGCATCAATGAAAGAATTGTTAGGGGGAAAGGGTGCTAA TTTAGCAGAGATGACTAATTTAGGAATCCCTGTTCCAACAGGCTTTACAGTGACTACAGAGGCTTGCATAAAATATTATA AGGATGGTAAAAAGTTAACAGATGAAGTAGTACAGCAAATAACAGATGCTATGGCAGACGTGGAAAAGAAAACTAACAAA AAATTTGGGAGTGAAGAAAATCCTTTATTAGTTTCAGTAAGATCAGGAGCTAGGGTTTCTATGCCAGGAATGATGGATAC TATATTAAATTTAGGATTAAATGATAAAACAGTAGAATCATTAGGCAAACTTACAAATAATGAAAGATTTGCTTATGACT CCTATAGAAGATTTATTCAAATGTTTTCAGATGTAGTTATGGGAATAGATAAGAGAGATTTTGAAAATGTATTAGACCAA ATGAAAGAAGAAAAAGGAATACAATATGATACAGATTTAACATCAGAAGATTTGAAAAAAATTGTAGTTAAATTTAAAGA AATATATAAAAAAGAAATGAGAGAAGATTTTCCACAAGAACCTAAAGATCAACTATTAGCAGCTATTACAGCGGTATTTG GTTCATGGGACAATCCAAGAGCTATAGTGTACAGAAGGCTAAATGACATCCCAGGAGATTGGGGTACAGCTGTAAATGTA CAATCAATGGTATTTGGAAATATGGGAGAAACTTCAGGAACAGGAGTTGCCTTTACAAGAAATCCTGCTACTGGAGAAAA TGAAATATTTGGAGAATATTTAATAAATGCTCAAGGTGAAGACGTTGTTGCTGGAATTAGAACACCTCAGCCTATAGCAA AACTAAAAGAAGATTTACCACAATGTTATGAAGAGTTTATGAGTATTGCTGAAAGACTTGAAAAGCATTACAAAGATATG CAGGATATGGAATTTACTATAGAACAAGGGAAATTATACTTCCTTCAAACTAGAAATGGTAAAAGGACTGCTCAATCTGC ATTAAAAATAGCTGTAGATTTAGTAGAAGAAGGAACATTACAAAAAGAAGAAGCCTTATTAAAAGTAGATCCAAAGCAAT TAGATACATTATTACATCCTAATTTTGATGAAAAAGAATTAAACGCTGCAGAAGTTATAGCGATTGGTCTTCCAGCATCT CCAGGAGCAGCTTGTGGAAGAGTTTATTTTACAGCTGAAGAAGCTAAAATTCATCATGAAAAAGGCGAAAAAGTAATATT AGTAAGACTTGAAACATCCCCAGAAGATATAGAAGGAATGGTAGCAGCAGAAGGAATATTAACAGCCAGAGGTGGAATGA CATCTCATGCAGCAGTTGTTGCTAGAGGTATGGGAACATGTTGTGTAGCAGGATGTTCTGAAATAACTATAAATGAAAAA GAAAAATATTTTCATGCAGCAGGAAAATCTTATAAAGAAGGAGACTATATATCTCTAGATGGAAGTACAGGAAAGGTTTA TGGTAAATCCATAAAAACTGTAGCGCCAGAAATAAGTGGATACTTTGGAACCTTTATGGGATGGGCAGATAAAGTAAGAG TATTGAAAGTGAGAACTAATGCAGATGCTCCAAGAGATGCAGCTCAAGCAGTTACCTTTGGAGCAGAAGGAATAGGTCTT TGTAGAACAGAGCACATGTTCTTCCAAGAAGAGAGAATACCAGCTGTTAGAGAAATGATACTTGCTAAAACAGAAGCCCA AAGAAGAAAAGCTTTAGGTAAGCTATTACCAATGCAAAGAGAAGATTTTATAGGAATATATGAAGCCATGGCAGAAAAAC CAGTGACTGTAAGATTATTAGATCCACCTTTACATGAGTTTTTACCAAAAGATGATGAGGATATAAAAGAATTATCAAAA GAAATGGAAGTAAGTTTTGAAGAATTAAAGAATACTGTACTATCATTACATGAATTCAATCCAATGATGGGACATAGAGG TTGTCGTTTAACTGTGTCTTATCCAGAAATGGCAGAAATGCAAACTACAGCTATAATAGAAGCTGCTATAGAAGTTACAA GAAATAAAGGGATAAAAATTAAGCCAGAAATAATGATACCGCTAATAGGGGAAATAAAAGAAATGGCTTATGTAAAATCT ATAGTTGTAGAAACAGCAGATAAGATACTAGAGAGAGAAAATGTGGAAATGGAATACCAAGTTGGAACAATGATAGAAAT TCCAAGAGCTGCACTTACAGCTGATGAAATAGCTAAAGAAGCAGAATTCTTTTCTTTTGGAACAAATGATTTGACACAAA TGACCTTTGGATTTTCAAGAGATGATGCAGGTAAATTCTTAAATTCTTATTATGATAAAAAAATATATGAGTTTGATCCA TTCCAAAGAATAGACCAAACTGGTGTTGGAAAGCTTGTAGAAATGGCAGTAAAACTAGGAAAACAAACAAGACCAGATAT AAAATTGGGAATATGTGGAGAACATGGTGGAGATCCATCATCTATAGAATTCTGTCACAATGTAGGATTAAACTATGTGT CTTGTTCACCATTTAGGGTACCTGTAGCAAGATTAGCTGCAGCACAAGCTCAAATAAAAAACCCAAGAAAGTAA
Upstream 100 bases:
>100_bases AGGTTGGAGAAAAAGTTTAAGATAAAAGCTTTAAATTAGATAATTACTTATCTAAATATATATTAAATTACAAAGAAATT TTACAGAGGGGATGTTTATT
Downstream 100 bases:
>100_bases AAGTAAGTATAAGGGATGTAAGCCTAGTGTAAAATTGGCTTACATCTTTTTTAATATATTAAATCTTTGCCAAATTTAGA TTCTATGTGTTTTCCAAATA
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 877; Mature: 877
Protein sequence:
>877_residues MENKKHVYLFSEGNASMKELLGGKGANLAEMTNLGIPVPTGFTVTTEACIKYYKDGKKLTDEVVQQITDAMADVEKKTNK KFGSEENPLLVSVRSGARVSMPGMMDTILNLGLNDKTVESLGKLTNNERFAYDSYRRFIQMFSDVVMGIDKRDFENVLDQ MKEEKGIQYDTDLTSEDLKKIVVKFKEIYKKEMREDFPQEPKDQLLAAITAVFGSWDNPRAIVYRRLNDIPGDWGTAVNV QSMVFGNMGETSGTGVAFTRNPATGENEIFGEYLINAQGEDVVAGIRTPQPIAKLKEDLPQCYEEFMSIAERLEKHYKDM QDMEFTIEQGKLYFLQTRNGKRTAQSALKIAVDLVEEGTLQKEEALLKVDPKQLDTLLHPNFDEKELNAAEVIAIGLPAS PGAACGRVYFTAEEAKIHHEKGEKVILVRLETSPEDIEGMVAAEGILTARGGMTSHAAVVARGMGTCCVAGCSEITINEK EKYFHAAGKSYKEGDYISLDGSTGKVYGKSIKTVAPEISGYFGTFMGWADKVRVLKVRTNADAPRDAAQAVTFGAEGIGL CRTEHMFFQEERIPAVREMILAKTEAQRRKALGKLLPMQREDFIGIYEAMAEKPVTVRLLDPPLHEFLPKDDEDIKELSK EMEVSFEELKNTVLSLHEFNPMMGHRGCRLTVSYPEMAEMQTTAIIEAAIEVTRNKGIKIKPEIMIPLIGEIKEMAYVKS IVVETADKILERENVEMEYQVGTMIEIPRAALTADEIAKEAEFFSFGTNDLTQMTFGFSRDDAGKFLNSYYDKKIYEFDP FQRIDQTGVGKLVEMAVKLGKQTRPDIKLGICGEHGGDPSSIEFCHNVGLNYVSCSPFRVPVARLAAAQAQIKNPRK
Sequences:
>Translated_877_residues MENKKHVYLFSEGNASMKELLGGKGANLAEMTNLGIPVPTGFTVTTEACIKYYKDGKKLTDEVVQQITDAMADVEKKTNK KFGSEENPLLVSVRSGARVSMPGMMDTILNLGLNDKTVESLGKLTNNERFAYDSYRRFIQMFSDVVMGIDKRDFENVLDQ MKEEKGIQYDTDLTSEDLKKIVVKFKEIYKKEMREDFPQEPKDQLLAAITAVFGSWDNPRAIVYRRLNDIPGDWGTAVNV QSMVFGNMGETSGTGVAFTRNPATGENEIFGEYLINAQGEDVVAGIRTPQPIAKLKEDLPQCYEEFMSIAERLEKHYKDM QDMEFTIEQGKLYFLQTRNGKRTAQSALKIAVDLVEEGTLQKEEALLKVDPKQLDTLLHPNFDEKELNAAEVIAIGLPAS PGAACGRVYFTAEEAKIHHEKGEKVILVRLETSPEDIEGMVAAEGILTARGGMTSHAAVVARGMGTCCVAGCSEITINEK EKYFHAAGKSYKEGDYISLDGSTGKVYGKSIKTVAPEISGYFGTFMGWADKVRVLKVRTNADAPRDAAQAVTFGAEGIGL CRTEHMFFQEERIPAVREMILAKTEAQRRKALGKLLPMQREDFIGIYEAMAEKPVTVRLLDPPLHEFLPKDDEDIKELSK EMEVSFEELKNTVLSLHEFNPMMGHRGCRLTVSYPEMAEMQTTAIIEAAIEVTRNKGIKIKPEIMIPLIGEIKEMAYVKS IVVETADKILERENVEMEYQVGTMIEIPRAALTADEIAKEAEFFSFGTNDLTQMTFGFSRDDAGKFLNSYYDKKIYEFDP FQRIDQTGVGKLVEMAVKLGKQTRPDIKLGICGEHGGDPSSIEFCHNVGLNYVSCSPFRVPVARLAAAQAQIKNPRK >Mature_877_residues MENKKHVYLFSEGNASMKELLGGKGANLAEMTNLGIPVPTGFTVTTEACIKYYKDGKKLTDEVVQQITDAMADVEKKTNK KFGSEENPLLVSVRSGARVSMPGMMDTILNLGLNDKTVESLGKLTNNERFAYDSYRRFIQMFSDVVMGIDKRDFENVLDQ MKEEKGIQYDTDLTSEDLKKIVVKFKEIYKKEMREDFPQEPKDQLLAAITAVFGSWDNPRAIVYRRLNDIPGDWGTAVNV QSMVFGNMGETSGTGVAFTRNPATGENEIFGEYLINAQGEDVVAGIRTPQPIAKLKEDLPQCYEEFMSIAERLEKHYKDM QDMEFTIEQGKLYFLQTRNGKRTAQSALKIAVDLVEEGTLQKEEALLKVDPKQLDTLLHPNFDEKELNAAEVIAIGLPAS PGAACGRVYFTAEEAKIHHEKGEKVILVRLETSPEDIEGMVAAEGILTARGGMTSHAAVVARGMGTCCVAGCSEITINEK EKYFHAAGKSYKEGDYISLDGSTGKVYGKSIKTVAPEISGYFGTFMGWADKVRVLKVRTNADAPRDAAQAVTFGAEGIGL CRTEHMFFQEERIPAVREMILAKTEAQRRKALGKLLPMQREDFIGIYEAMAEKPVTVRLLDPPLHEFLPKDDEDIKELSK EMEVSFEELKNTVLSLHEFNPMMGHRGCRLTVSYPEMAEMQTTAIIEAAIEVTRNKGIKIKPEIMIPLIGEIKEMAYVKS IVVETADKILERENVEMEYQVGTMIEIPRAALTADEIAKEAEFFSFGTNDLTQMTFGFSRDDAGKFLNSYYDKKIYEFDP FQRIDQTGVGKLVEMAVKLGKQTRPDIKLGICGEHGGDPSSIEFCHNVGLNYVSCSPFRVPVARLAAAQAQIKNPRK
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate. In E.histolytica and C.symbiosus, PPDK functions in the direction of ATP synthesis [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1788756, Length=455, Percent_Identity=24.6153846153846, Blast_Score=105, Evalue=2e-23, Organism=Escherichia coli, GI1787994, Length=740, Percent_Identity=24.4594594594595, Blast_Score=100, Evalue=4e-22, Organism=Escherichia coli, GI48994992, Length=451, Percent_Identity=23.2815964523282, Blast_Score=87, Evalue=5e-18, Organism=Escherichia coli, GI1788726, Length=447, Percent_Identity=23.2662192393736, Blast_Score=82, Evalue=2e-16, Organism=Escherichia coli, GI1789193, Length=331, Percent_Identity=24.1691842900302, Blast_Score=81, Evalue=3e-16,
Paralogues:
None
Copy number: 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2659 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 4,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 97837; Mature: 97837
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENKKHVYLFSEGNASMKELLGGKGANLAEMTNLGIPVPTGFTVTTEACIKYYKDGKKLT CCCCCEEEEEECCCCHHHHHHCCCCCCHHHHHCCCCCCCCCCEEHHHHHHHHHHCCHHHH DEVVQQITDAMADVEKKTNKKFGSEENPLLVSVRSGARVSMPGMMDTILNLGLNDKTVES HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEECCHHHHHHHHCCCCHHHHHH LGKLTNNERFAYDSYRRFIQMFSDVVMGIDKRDFENVLDQMKEEKGIQYDTDLTSEDLKK HHHHCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH IVVKFKEIYKKEMREDFPQEPKDQLLAAITAVFGSWDNPRAIVYRRLNDIPGDWGTAVNV HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEE QSMVFGNMGETSGTGVAFTRNPATGENEIFGEYLINAQGEDVVAGIRTPQPIAKLKEDLP HHHHCCCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHH QCYEEFMSIAERLEKHYKDMQDMEFTIEQGKLYFLQTRNGKRTAQSALKIAVDLVEEGTL HHHHHHHHHHHHHHHHHCCHHHHHEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHCCCC QKEEALLKVDPKQLDTLLHPNFDEKELNAAEVIAIGLPASPGAACGRVYFTAEEAKIHHE CHHHHHHEECHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEHHHHHHHC KGEKVILVRLETSPEDIEGMVAAEGILTARGGMTSHAAVVARGMGTCCVAGCSEITINEK CCCEEEEEEECCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHCCCHHHHCCCCCEEECHH EKYFHAAGKSYKEGDYISLDGSTGKVYGKSIKTVAPEISGYFGTFMGWADKVRVLKVRTN HHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHCHHHHHHHHHHHHHHCCEEEEEEECC ADAPRDAAQAVTFGAEGIGLCRTEHMFFQEERIPAVREMILAKTEAQRRKALGKLLPMQR CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC EDFIGIYEAMAEKPVTVRLLDPPLHEFLPKDDEDIKELSKEMEVSFEELKNTVLSLHEFN HHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC PMMGHRGCRLTVSYPEMAEMQTTAIIEAAIEVTRNKGIKIKPEIMIPLIGEIKEMAYVKS CCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEECCCEECCHHHHHHHHHHHHH IVVETADKILERENVEMEYQVGTMIEIPRAALTADEIAKEAEFFSFGTNDLTQMTFGFSR HHHHHHHHHHHHCCCCEEEECCCEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCC DDAGKFLNSYYDKKIYEFDPFQRIDQTGVGKLVEMAVKLGKQTRPDIKLGICGEHGGDPS CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCH SIEFCHNVGLNYVSCSPFRVPVARLAAAQAQIKNPRK HHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MENKKHVYLFSEGNASMKELLGGKGANLAEMTNLGIPVPTGFTVTTEACIKYYKDGKKLT CCCCCEEEEEECCCCHHHHHHCCCCCCHHHHHCCCCCCCCCCEEHHHHHHHHHHCCHHHH DEVVQQITDAMADVEKKTNKKFGSEENPLLVSVRSGARVSMPGMMDTILNLGLNDKTVES HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEECCHHHHHHHHCCCCHHHHHH LGKLTNNERFAYDSYRRFIQMFSDVVMGIDKRDFENVLDQMKEEKGIQYDTDLTSEDLKK HHHHCCCCCEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH IVVKFKEIYKKEMREDFPQEPKDQLLAAITAVFGSWDNPRAIVYRRLNDIPGDWGTAVNV HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCEEE QSMVFGNMGETSGTGVAFTRNPATGENEIFGEYLINAQGEDVVAGIRTPQPIAKLKEDLP HHHHCCCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHH QCYEEFMSIAERLEKHYKDMQDMEFTIEQGKLYFLQTRNGKRTAQSALKIAVDLVEEGTL HHHHHHHHHHHHHHHHHCCHHHHHEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHCCCC QKEEALLKVDPKQLDTLLHPNFDEKELNAAEVIAIGLPASPGAACGRVYFTAEEAKIHHE CHHHHHHEECHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEHHHHHHHC KGEKVILVRLETSPEDIEGMVAAEGILTARGGMTSHAAVVARGMGTCCVAGCSEITINEK CCCEEEEEEECCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHCCCHHHHCCCCCEEECHH EKYFHAAGKSYKEGDYISLDGSTGKVYGKSIKTVAPEISGYFGTFMGWADKVRVLKVRTN HHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHCHHHHHHHHHHHHHHCCEEEEEEECC ADAPRDAAQAVTFGAEGIGLCRTEHMFFQEERIPAVREMILAKTEAQRRKALGKLLPMQR CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCC EDFIGIYEAMAEKPVTVRLLDPPLHEFLPKDDEDIKELSKEMEVSFEELKNTVLSLHEFN HHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC PMMGHRGCRLTVSYPEMAEMQTTAIIEAAIEVTRNKGIKIKPEIMIPLIGEIKEMAYVKS CCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEECCCEECCHHHHHHHHHHHHH IVVETADKILERENVEMEYQVGTMIEIPRAALTADEIAKEAEFFSFGTNDLTQMTFGFSR HHHHHHHHHHHHCCCCEEEECCCEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCC DDAGKFLNSYYDKKIYEFDPFQRIDQTGVGKLVEMAVKLGKQTRPDIKLGICGEHGGDPS CHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCH SIEFCHNVGLNYVSCSPFRVPVARLAAAQAQIKNPRK HHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2176881; 6257292; 11695893; 11468288; 8610096; 9753432 [H]