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The map label for this gene is yrvN [H]

Identifier: 170756647

GI number: 170756647

Start: 2739700

End: 2740950

Strand: Reverse

Name: yrvN [H]

Synonym: CLD_1995

Alternate gene names: 170756647

Gene position: 2740950-2739700 (Counterclockwise)

Preceding gene: 170757551

Following gene: 170756317

Centisome position: 69.25

GC content: 28.78

Gene sequence:

>1251_bases
ATGAGGCCTTTAGCAGATTTAATGAGACCTAAGAAATTAGAAGATTTTGTAGGGCAAAAGCATATACTATCTGAAAATAA
ACCTTTATATAATTTAATGAAAAATAAATCAATATGTAATTCCATATTTTATGGTCCACCGGGCACAGGTAAAACTACTT
TAGCTAATATTATGGCAAATTATGTGGATAAGAAATTTTATAGATTAAATGCTACTACAGCATCTATTAAGGATATTCAA
GAAATAACTTCTAGCATAAACAGTTTGTTAAATTATAGTGGTGTTGTATTATATATAGATGAGCTGCAGCATTTTACAAA
AAAACAACAACAAGCTCTATTAGAGTTTATAGAGGATGGTAGAGTGATATTAATAGCTAGCACTACTGAAAATCCTTATT
TTGTTATACATAAAGCAATTTTAAGTAGATGCAATATATTTCAATTTAAGCCCCTTAATAGAGAGGATATTATTTTAGGC
TTAGAAAAGGCTATAAACAAATTAATAGATAAGGGTATAAATATAAAATATAGTTTTGAATCTTTAGAATATATAGGCGA
GATATGTCAAGGAGATTATAGAAAGGCCTATAATATTTTAGAACTAGCTGTAAATTCTCACTGTGGGTTTAACATAGAAA
TTACATTGGACTATATAGAATCTTTAGCCCAATCTAACATTAGAGCAGATGCTACAGGAGATGAATATTATAACATTTTA
AGTGCCTTCCAAAAAAGTATAAGAGGAAGTGACGCTGACGCAGCAGTTCATTATTTAGCAAGACTTATAAAAAGTGGAGA
TATTACATCTATTACAAGAAGGTTATCAGTAATGGCAGCAGAGGATATTGGATTATCCTATCCTAATGCATTAACTATTG
TAAATTCTGGCATAGAATTAGCTTTAAAAGTAGGATTTCCTGAGGCGCAAATTATTTTATCTGAAATCACAATATACTTA
GCTACTTTGCCCAAATCAAACAGTGCATACATAGCCATAAAAAATGCTATGAAAGATTTAGAAAGTGTTAATTTTGGAGA
TGTACCAGATCATCTTAAAGATTCTCATTACCATGGTGCTAAGAATTTAGGTGTAGAGGGGTATAAATATCCTCATGATT
TTAATAATCATTATGTCAGTCAGGAATACTTACCTAAAGAGTTAAAGGATAAAGTATATTATATAGCACAACATAATAAA
TATGAAGAAAATCTAAAAAAATATTGGGAAAATATTAAAAAATTTAAATAA

Upstream 100 bases:

>100_bases
TTTATAGATGAAAAGTTTTATATGAATTAAGTTTATAACTTGATAAAACAAGGGCTTTAACTTACAATGAGAGTTAAAGT
CTTTTTAGTGAGGTGAAATT

Downstream 100 bases:

>100_bases
AGAAATTAATATTTTAGTATAGTCATTTATAATTAAGACTATACTTTTTGTATTAAAAAATAATTATTATATATAATAGG
ATTATAATTATAGTAACTTT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MRPLADLMRPKKLEDFVGQKHILSENKPLYNLMKNKSICNSIFYGPPGTGKTTLANIMANYVDKKFYRLNATTASIKDIQ
EITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVILIASTTENPYFVIHKAILSRCNIFQFKPLNREDIILG
LEKAINKLIDKGINIKYSFESLEYIGEICQGDYRKAYNILELAVNSHCGFNIEITLDYIESLAQSNIRADATGDEYYNIL
SAFQKSIRGSDADAAVHYLARLIKSGDITSITRRLSVMAAEDIGLSYPNALTIVNSGIELALKVGFPEAQIILSEITIYL
ATLPKSNSAYIAIKNAMKDLESVNFGDVPDHLKDSHYHGAKNLGVEGYKYPHDFNNHYVSQEYLPKELKDKVYYIAQHNK
YEENLKKYWENIKKFK

Sequences:

>Translated_416_residues
MRPLADLMRPKKLEDFVGQKHILSENKPLYNLMKNKSICNSIFYGPPGTGKTTLANIMANYVDKKFYRLNATTASIKDIQ
EITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVILIASTTENPYFVIHKAILSRCNIFQFKPLNREDIILG
LEKAINKLIDKGINIKYSFESLEYIGEICQGDYRKAYNILELAVNSHCGFNIEITLDYIESLAQSNIRADATGDEYYNIL
SAFQKSIRGSDADAAVHYLARLIKSGDITSITRRLSVMAAEDIGLSYPNALTIVNSGIELALKVGFPEAQIILSEITIYL
ATLPKSNSAYIAIKNAMKDLESVNFGDVPDHLKDSHYHGAKNLGVEGYKYPHDFNNHYVSQEYLPKELKDKVYYIAQHNK
YEENLKKYWENIKKFK
>Mature_416_residues
MRPLADLMRPKKLEDFVGQKHILSENKPLYNLMKNKSICNSIFYGPPGTGKTTLANIMANYVDKKFYRLNATTASIKDIQ
EITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVILIASTTENPYFVIHKAILSRCNIFQFKPLNREDIILG
LEKAINKLIDKGINIKYSFESLEYIGEICQGDYRKAYNILELAVNSHCGFNIEITLDYIESLAQSNIRADATGDEYYNIL
SAFQKSIRGSDADAAVHYLARLIKSGDITSITRRLSVMAAEDIGLSYPNALTIVNSGIELALKVGFPEAQIILSEITIYL
ATLPKSNSAYIAIKNAMKDLESVNFGDVPDHLKDSHYHGAKNLGVEGYKYPHDFNNHYVSQEYLPKELKDKVYYIAQHNK
YEENLKKYWENIKKFK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=441, Percent_Identity=33.5600907029478, Blast_Score=227, Evalue=1e-59,
Organism=Homo sapiens, GI18426904, Length=436, Percent_Identity=31.4220183486239, Blast_Score=192, Evalue=7e-49,
Organism=Escherichia coli, GI1787119, Length=414, Percent_Identity=35.024154589372, Blast_Score=252, Evalue=3e-68,
Organism=Saccharomyces cerevisiae, GI6324111, Length=426, Percent_Identity=34.9765258215962, Blast_Score=232, Evalue=9e-62,
Organism=Saccharomyces cerevisiae, GI6322528, Length=293, Percent_Identity=26.962457337884, Blast_Score=70, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6324039, Length=221, Percent_Identity=28.5067873303167, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 47304; Mature: 47304

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPLADLMRPKKLEDFVGQKHILSENKPLYNLMKNKSICNSIFYGPPGTGKTTLANIMAN
CCCHHHHHCCHHHHHHHCCHHHHCCCCHHHHHHHCHHHHHHCCCCCCCCCHHHHHHHHHH
YVDKKFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDG
HHHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCC
RVILIASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDKGINIKYSFE
CEEEEEECCCCCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEECHH
SLEYIGEICQGDYRKAYNILELAVNSHCGFNIEITLDYIESLAQSNIRADATGDEYYNIL
HHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCCCCCHHHHHHH
SAFQKSIRGSDADAAVHYLARLIKSGDITSITRRLSVMAAEDIGLSYPNALTIVNSGIEL
HHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEE
ALKVGFPEAQIILSEITIYLATLPKSNSAYIAIKNAMKDLESVNFGDVPDHLKDSHYHGA
EEEECCCHHHHHHHHHHHHHEECCCCCCCEEEEHHHHHHHHCCCCCCCCHHHCCCCCCCC
KNLGVEGYKYPHDFNNHYVSQEYLPKELKDKVYYIAQHNKYEENLKKYWENIKKFK
CCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHEEEEECCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRPLADLMRPKKLEDFVGQKHILSENKPLYNLMKNKSICNSIFYGPPGTGKTTLANIMAN
CCCHHHHHCCHHHHHHHCCHHHHCCCCHHHHHHHCHHHHHHCCCCCCCCCHHHHHHHHHH
YVDKKFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDG
HHHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCC
RVILIASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDKGINIKYSFE
CEEEEEECCCCCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEECHH
SLEYIGEICQGDYRKAYNILELAVNSHCGFNIEITLDYIESLAQSNIRADATGDEYYNIL
HHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCCCCCCHHHHHHH
SAFQKSIRGSDADAAVHYLARLIKSGDITSITRRLSVMAAEDIGLSYPNALTIVNSGIEL
HHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEE
ALKVGFPEAQIILSEITIYLATLPKSNSAYIAIKNAMKDLESVNFGDVPDHLKDSHYHGA
EEEECCCHHHHHHHHHHHHHEECCCCCCCEEEEHHHHHHHHCCCCCCCCHHHCCCCCCCC
KNLGVEGYKYPHDFNNHYVSQEYLPKELKDKVYYIAQHNKYEENLKKYWENIKKFK
CCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHEEEEECCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]