| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is spoIIP [H]
Identifier: 170756619
GI number: 170756619
Start: 3214367
End: 3215458
Strand: Reverse
Name: spoIIP [H]
Synonym: CLD_1580
Alternate gene names: 170756619
Gene position: 3215458-3214367 (Counterclockwise)
Preceding gene: 170755920
Following gene: 170757459
Centisome position: 81.23
GC content: 27.29
Gene sequence:
>1092_bases ATGAATTACAAAAGGATAAAGCCAAAAACAAATCAAAATCATGGAAAAACATGGATAATTATATTCATGATATTAATTTT TTTTGTAGGAACAGTGCCCTGTGTGGCAAAAGCAAAAGCAAAAGTTAATTTTAATAAAAGAAATATGCTTTATGTTCAGA TATTAAATTATGCTATGCCTACAGTAAAAGCTATTTCCTTTAATGAAGAAGATATGGCAGAAAATAAGTTTAGTTTTAAA AATCTTGTACTTCAGATGATAGGATTAAATATACATAATCCTATATCCTTAGTAGAAAAGGAAATGCCGGTTTTATGTCT TAATTCTTCAAAGGAAGATACAAAGGATAAAAGTATGGCATTAGATCCTTTTAAATTAGAAGAAAAAGAAGTATCAAAGT ATAAAGCAGAAGAAATGAAAGATGGAAAAGAAGATTTGAATTTGGAAAATAAGGTAGTAAATGTTCAGGAACCAAAATTA AAAAAGAAATTAAATCCTAAAAAGCCAGAGGTGTTAATATATCATACTCATACTACAGAAAGTTATAAGCCTGGGGAAGC AAGTAATTTTGATAACGATAAAAATGTTTGTGCAGTAGGACAGGAATTAGCGAAAGAACTTATGGATAATTATGGAATAA ATACCCTACATGACAAAACTGTACATGATGCTCAAGCTTATACACAAAGTTATGCAAGATCATCAGTTACAGTGGATAAG CAACTAAAACAACATGGAGATTTTAAACTTATAATAGACCTACATAGAGATGCTGGAAGTAATAAAAAAGCCTTTGTAAC AAAATTAAATGGAGAAAATGTAGCAAAATTTATGATGGTAATGGCAAAAAAGAATCCTCATTTTAATAAAAATAATAATA TGGCTAATAATATAATGAATACTTCAAATAAATTATTTCCAGGATTTTGTAAGGGTATATATTATTATAATTATGGTACA AGATATTTTAATCAAGATAAAAGTAATAATGCAGTTTTAATAGAAGTAGGTGCAGATATAAACACTACAGGGGAATCAAA AGCTTCAGCAAAATATTTAGCTAGAATTATTGCAGAATGTTTAAATAAATAA
Upstream 100 bases:
>100_bases TTTAACTAAGAGGTTAGAAGTAAAATGGTTTTATAAATATAGTAATAAAATAGTTTTCCCTCTCATAAAATTATGTATAA GCAGAATAGGGGGAGGAAAA
Downstream 100 bases:
>100_bases CAAAATTGAATAAATATAGAAAAAGTAGTACATCCTTATAATAAGAATAAAAAAGGGGTGTACTTTTTTATGGAAATAAT AAAAAAGAAAAAAAGATTTA
Product: stage II sporulation protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 363; Mature: 363
Protein sequence:
>363_residues MNYKRIKPKTNQNHGKTWIIIFMILIFFVGTVPCVAKAKAKVNFNKRNMLYVQILNYAMPTVKAISFNEEDMAENKFSFK NLVLQMIGLNIHNPISLVEKEMPVLCLNSSKEDTKDKSMALDPFKLEEKEVSKYKAEEMKDGKEDLNLENKVVNVQEPKL KKKLNPKKPEVLIYHTHTTESYKPGEASNFDNDKNVCAVGQELAKELMDNYGINTLHDKTVHDAQAYTQSYARSSVTVDK QLKQHGDFKLIIDLHRDAGSNKKAFVTKLNGENVAKFMMVMAKKNPHFNKNNNMANNIMNTSNKLFPGFCKGIYYYNYGT RYFNQDKSNNAVLIEVGADINTTGESKASAKYLARIIAECLNK
Sequences:
>Translated_363_residues MNYKRIKPKTNQNHGKTWIIIFMILIFFVGTVPCVAKAKAKVNFNKRNMLYVQILNYAMPTVKAISFNEEDMAENKFSFK NLVLQMIGLNIHNPISLVEKEMPVLCLNSSKEDTKDKSMALDPFKLEEKEVSKYKAEEMKDGKEDLNLENKVVNVQEPKL KKKLNPKKPEVLIYHTHTTESYKPGEASNFDNDKNVCAVGQELAKELMDNYGINTLHDKTVHDAQAYTQSYARSSVTVDK QLKQHGDFKLIIDLHRDAGSNKKAFVTKLNGENVAKFMMVMAKKNPHFNKNNNMANNIMNTSNKLFPGFCKGIYYYNYGT RYFNQDKSNNAVLIEVGADINTTGESKASAKYLARIIAECLNK >Mature_363_residues MNYKRIKPKTNQNHGKTWIIIFMILIFFVGTVPCVAKAKAKVNFNKRNMLYVQILNYAMPTVKAISFNEEDMAENKFSFK NLVLQMIGLNIHNPISLVEKEMPVLCLNSSKEDTKDKSMALDPFKLEEKEVSKYKAEEMKDGKEDLNLENKVVNVQEPKL KKKLNPKKPEVLIYHTHTTESYKPGEASNFDNDKNVCAVGQELAKELMDNYGINTLHDKTVHDAQAYTQSYARSSVTVDK QLKQHGDFKLIIDLHRDAGSNKKAFVTKLNGENVAKFMMVMAKKNPHFNKNNNMANNIMNTSNKLFPGFCKGIYYYNYGT RYFNQDKSNNAVLIEVGADINTTGESKASAKYLARIIAECLNK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010897 [H]
Pfam domain/function: PF07454 SpoIIP [H]
EC number: NA
Molecular weight: Translated: 41394; Mature: 41394
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYKRIKPKTNQNHGKTWIIIFMILIFFVGTVPCVAKAKAKVNFNKRNMLYVQILNYAMP CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHEEEEECCCCEEEEHHHHHHCC TVKAISFNEEDMAENKFSFKNLVLQMIGLNIHNPISLVEKEMPVLCLNSSKEDTKDKSMA CEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEECCCCCCCCCHHCC LDPFKLEEKEVSKYKAEEMKDGKEDLNLENKVVNVQEPKLKKKLNPKKPEVLIYHTHTTE CCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCEECCCCCHHHHCCCCCCCCEEEEEECCCC SYKPGEASNFDNDKNVCAVGQELAKELMDNYGINTLHDKTVHDAQAYTQSYARSSVTVDK CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH QLKQHGDFKLIIDLHRDAGSNKKAFVTKLNGENVAKFMMVMAKKNPHFNKNNNMANNIMN HHHHCCCEEEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHC TSNKLFPGFCKGIYYYNYGTRYFNQDKSNNAVLIEVGADINTTGESKASAKYLARIIAEC CCCCCCCHHHCCEEEEECCCEEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH LNK HCC >Mature Secondary Structure MNYKRIKPKTNQNHGKTWIIIFMILIFFVGTVPCVAKAKAKVNFNKRNMLYVQILNYAMP CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHEEEEECCCCEEEEHHHHHHCC TVKAISFNEEDMAENKFSFKNLVLQMIGLNIHNPISLVEKEMPVLCLNSSKEDTKDKSMA CEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEECCCCCCCCCHHCC LDPFKLEEKEVSKYKAEEMKDGKEDLNLENKVVNVQEPKLKKKLNPKKPEVLIYHTHTTE CCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCEECCCCCHHHHCCCCCCCCEEEEEECCCC SYKPGEASNFDNDKNVCAVGQELAKELMDNYGINTLHDKTVHDAQAYTQSYARSSVTVDK CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH QLKQHGDFKLIIDLHRDAGSNKKAFVTKLNGENVAKFMMVMAKKNPHFNKNNNMANNIMN HHHHCCCEEEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHC TSNKLFPGFCKGIYYYNYGTRYFNQDKSNNAVLIEVGADINTTGESKASAKYLARIIAEC CCCCCCCHHHCCEEEEECCCEEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH LNK HCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]