| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170756611
Identifier: 170756611
GI number: 170756611
Start: 2342389
End: 2343216
Strand: Reverse
Name: 170756611
Synonym: CLD_2425
Alternate gene names: NA
Gene position: 2343216-2342389 (Counterclockwise)
Preceding gene: 170757857
Following gene: 170755794
Centisome position: 59.2
GC content: 27.9
Gene sequence:
>828_bases ATGAATAAATTACAACTTAAAGTATTGGAAAATAAACCAGCAGAAGTACATTTTAATTTTGATGAAATATCAAATTATTT AGATTCAACACTTAATAAATATCAAGGAATTGTTGTTACAGAGGAGACTATAAAAGATGGCAAGAAGGTTATAGCAGATT TAAGAAAAGGTAAAAAATCTTTAGATGAATTTAGAAAGAAAACTAAAAAAGAACTTACTAAGTCAGTAACAGAATTTGAA AATCAATGCAAGGAGCTTAGTAAAAAGTTTGATGAAGTTATAGATCCAATAAATGAACAGGCAGAACAGTTTGAAATTAA GAGAAAAGAAGAAAAGAAAGTTGAGGTTCAAAAGGTTATAAAAATAGTTTGTGAACTTAAACATGTTGGGGATTTACCAC TAGATGACAAGTATCTCAATAAGTCAATGAGCTTAAAAGCTATTAAAGAGGACTTAATAAGTATTGCTAATCAAATGCTT TTAGAAAAAGCCAATCATAAAAAAAATGTAGCATTAATCGAAGGAAAAATTGATTTAGCTAATGCTAAGTATGGTGTAAC TATGGTTAAAGAGCCTTATGTGAATATGTTGGAATATGAGGACGTGAATAATATTTTAACTAAAATTTTAGAAGATGGTG AAGTTCTTAAAAATAAACTAGCTGATACGTCAAAGCAAAAAACTGCATCATTTAAACAGGTAGTACAAGCACCTAAGAAA AATGAAGAAATATTCGTAGACACTTATGAGATTGAGGGAACTGAAAAGCAGTTAGATGATTTAGAAGATTTCTTAAATAA AAATAACTATAAATGGAGCACTAAGTAA
Upstream 100 bases:
>100_bases CTGCATAATTTAATGAGTGTTTTACCATGGATTTTAAATAGTCAAAATTTTAAAGAGGTTATAAAGAACGGTAAATGGTA TTTGGAGGAGGATGAGCGAC
Downstream 100 bases:
>100_bases TGGCAGCAGAAAAGAAATTTGAAAATGAAATAAAGAAGTTTTTAAGTGAATTACCAAAAACATGGTTTTTTAAATACTGG GCTGGTCCCATGAGTAAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 275; Mature: 275
Protein sequence:
>275_residues MNKLQLKVLENKPAEVHFNFDEISNYLDSTLNKYQGIVVTEETIKDGKKVIADLRKGKKSLDEFRKKTKKELTKSVTEFE NQCKELSKKFDEVIDPINEQAEQFEIKRKEEKKVEVQKVIKIVCELKHVGDLPLDDKYLNKSMSLKAIKEDLISIANQML LEKANHKKNVALIEGKIDLANAKYGVTMVKEPYVNMLEYEDVNNILTKILEDGEVLKNKLADTSKQKTASFKQVVQAPKK NEEIFVDTYEIEGTEKQLDDLEDFLNKNNYKWSTK
Sequences:
>Translated_275_residues MNKLQLKVLENKPAEVHFNFDEISNYLDSTLNKYQGIVVTEETIKDGKKVIADLRKGKKSLDEFRKKTKKELTKSVTEFE NQCKELSKKFDEVIDPINEQAEQFEIKRKEEKKVEVQKVIKIVCELKHVGDLPLDDKYLNKSMSLKAIKEDLISIANQML LEKANHKKNVALIEGKIDLANAKYGVTMVKEPYVNMLEYEDVNNILTKILEDGEVLKNKLADTSKQKTASFKQVVQAPKK NEEIFVDTYEIEGTEKQLDDLEDFLNKNNYKWSTK >Mature_275_residues MNKLQLKVLENKPAEVHFNFDEISNYLDSTLNKYQGIVVTEETIKDGKKVIADLRKGKKSLDEFRKKTKKELTKSVTEFE NQCKELSKKFDEVIDPINEQAEQFEIKRKEEKKVEVQKVIKIVCELKHVGDLPLDDKYLNKSMSLKAIKEDLISIANQML LEKANHKKNVALIEGKIDLANAKYGVTMVKEPYVNMLEYEDVNNILTKILEDGEVLKNKLADTSKQKTASFKQVVQAPKK NEEIFVDTYEIEGTEKQLDDLEDFLNKNNYKWSTK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31852; Mature: 31852
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKLQLKVLENKPAEVHFNFDEISNYLDSTLNKYQGIVVTEETIKDGKKVIADLRKGKKS CCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHH LDEFRKKTKKELTKSVTEFENQCKELSKKFDEVIDPINEQAEQFEIKRKEEKKVEVQKVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KIVCELKHVGDLPLDDKYLNKSMSLKAIKEDLISIANQMLLEKANHKKNVALIEGKIDLA HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEC NAKYGVTMVKEPYVNMLEYEDVNNILTKILEDGEVLKNKLADTSKQKTASFKQVVQAPKK CCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHCCCC NEEIFVDTYEIEGTEKQLDDLEDFLNKNNYKWSTK CCCEEEEEEECCCHHHHHHHHHHHHCCCCCEECCC >Mature Secondary Structure MNKLQLKVLENKPAEVHFNFDEISNYLDSTLNKYQGIVVTEETIKDGKKVIADLRKGKKS CCCEEEEEECCCCCEEEECHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHH LDEFRKKTKKELTKSVTEFENQCKELSKKFDEVIDPINEQAEQFEIKRKEEKKVEVQKVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KIVCELKHVGDLPLDDKYLNKSMSLKAIKEDLISIANQMLLEKANHKKNVALIEGKIDLA HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEC NAKYGVTMVKEPYVNMLEYEDVNNILTKILEDGEVLKNKLADTSKQKTASFKQVVQAPKK CCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHCCCC NEEIFVDTYEIEGTEKQLDDLEDFLNKNNYKWSTK CCCEEEEEEECCCHHHHHHHHHHHHCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA