| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
Click here to switch to the map view.
The map label for this gene is yebN [C]
Identifier: 170756491
GI number: 170756491
Start: 494692
End: 495243
Strand: Direct
Name: yebN [C]
Synonym: CLD_0355
Alternate gene names: 170756491
Gene position: 494692-495243 (Clockwise)
Preceding gene: 170757660
Following gene: 170754652
Centisome position: 12.5
GC content: 24.82
Gene sequence:
>552_bases ATGGAAGTACAAGAACTCTTTTTACTAGCTTTAGCAATCTCTTTAGATGCTTTTGGAGTAATACTGTGCATTGGCATAAA TAAAGGTATTACTTTAAAATCAAGCATGATTTTTGTTTTTTCTTTTGGATTTTTTCAGTTTTTTCTTTCCTTTCTGGGTG GATACATAGGTACTATTTTTAATAAATATATAGTCCCAATACCAACTATTGTAGGTGGCTTAATAATAATAATAGTAGGA ATACTCATGATAACAGAGGGTTTTAAAGAAAAAGAAGAAAGTATATTTTTGAATAAAATTATGTATCTTATATTGGGTGT TTCTGTCAGCATAGATGCTTTAGTTATAGGTTTTACAACTTTAAGTTATATTAACAATTTGTTTTATTTATTTATGAGTT CTTTGTTTATGGGATTAATCGCTACAATAATTTGCAGCTTAGGAATTATTTTATCTAAATATATTAAAAAAATATCTATA ATCTCAAGTTATGCAGATTATATAGGAGGAATAATATTAATATTATTTGGTTTGAAAATGTTATTTTTTTAA
Upstream 100 bases:
>100_bases ATTAAATAAAATAAATAACTTTGCTCGTTATAAAAGTAGCATTATATATATATAAATAGTTAAGAAAGCATTTATTATTT AATATTAATAGGGGGATATG
Downstream 100 bases:
>100_bases AATTATTAATAGGTATTGAGTTATGTTTACTAATTATTGTATTATTATCATAAGGTGATAATTATGATAGAAGAGGAATT ATTGAAGAAAAACAATTTAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 183; Mature: 183
Protein sequence:
>183_residues MEVQELFLLALAISLDAFGVILCIGINKGITLKSSMIFVFSFGFFQFFLSFLGGYIGTIFNKYIVPIPTIVGGLIIIIVG ILMITEGFKEKEESIFLNKIMYLILGVSVSIDALVIGFTTLSYINNLFYLFMSSLFMGLIATIICSLGIILSKYIKKISI ISSYADYIGGIILILFGLKMLFF
Sequences:
>Translated_183_residues MEVQELFLLALAISLDAFGVILCIGINKGITLKSSMIFVFSFGFFQFFLSFLGGYIGTIFNKYIVPIPTIVGGLIIIIVG ILMITEGFKEKEESIFLNKIMYLILGVSVSIDALVIGFTTLSYINNLFYLFMSSLFMGLIATIICSLGIILSKYIKKISI ISSYADYIGGIILILFGLKMLFF >Mature_183_residues MEVQELFLLALAISLDAFGVILCIGINKGITLKSSMIFVFSFGFFQFFLSFLGGYIGTIFNKYIVPIPTIVGGLIIIIVG ILMITEGFKEKEESIFLNKIMYLILGVSVSIDALVIGFTTLSYINNLFYLFMSSLFMGLIATIICSLGIILSKYIKKISI ISSYADYIGGIILILFGLKMLFF
Specific function: Unknown
COG id: COG1971
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0059 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y394_CLOBH (A5HYT8)
Other databases:
- EMBL: AM412317 - RefSeq: YP_001252938.1 - GeneID: 5184649 - GenomeReviews: AM412317_GR - KEGG: cbo:CBO0394 - eggNOG: COG1971 - HOGENOM: HBG709685 - OMA: FIGRHAK - ProtClustDB: CLSK882643 - BioCyc: CBOT36826:CBO0394-MONOMER - HAMAP: MF_01521 - InterPro: IPR003810 - InterPro: IPR022929
Pfam domain/function: PF02659 DUF204
EC number: NA
Molecular weight: Translated: 20277; Mature: 20277
Theoretical pI: Translated: 8.16; Mature: 8.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0x19f25be8)-; HASH(0x1b64b0ec)-; HASH(0x1afd2348)-; HASH(0x1b8d064c)-; HASH(0x1a85c900)-; HASH(0x1a55b0a4)-;
Cys/Met content:
1.1 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEVQELFLLALAISLDAFGVILCIGINKGITLKSSMIFVFSFGFFQFFLSFLGGYIGTIF CCHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NKYIVPIPTIVGGLIIIIVGILMITEGFKEKEESIFLNKIMYLILGVSVSIDALVIGFTT HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSYINNLFYLFMSSLFMGLIATIICSLGIILSKYIKKISIISSYADYIGGIILILFGLKM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFF HHH >Mature Secondary Structure MEVQELFLLALAISLDAFGVILCIGINKGITLKSSMIFVFSFGFFQFFLSFLGGYIGTIF CCHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NKYIVPIPTIVGGLIIIIVGILMITEGFKEKEESIFLNKIMYLILGVSVSIDALVIGFTT HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSYINNLFYLFMSSLFMGLIATIICSLGIILSKYIKKISIISSYADYIGGIILILFGLKM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFF HHH
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA