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The map label for this gene is yybA [H]

Identifier: 170756445

GI number: 170756445

Start: 765334

End: 765771

Strand: Direct

Name: yybA [H]

Synonym: CLD_0116

Alternate gene names: 170756445

Gene position: 765334-765771 (Clockwise)

Preceding gene: 170754937

Following gene: 170757011

Centisome position: 19.34

GC content: 30.14

Gene sequence:

>438_bases
ATGAAAAAAAGAAATCTTTTAAACAAATATGTGTCAATGATATATAGAGCGTCACAAGGTTATTTAGATGATGCCTTAAG
AAAGTATGAGTTAAGCTCAGGAACATATCCTTTTATTTTGGCACTATATGACAATGAAGGCATAAGCCAAAACGCTTTAA
GTGAGTATGTAAAAGTAGATAAGGCTCTTTCTGCTAGAGCTATAAAAAGGCTTATAGAGCTTGGATATGTAGAAAAAATT
ATAAATAGTAAAGATGCAAGAGCATATAAATTATATCTTACAGAAAAGGCTAAGGTTGTTGTTCCAGAAGTTAGAAAATC
CTTAGATGGTTGGTTAAATATAATAACTAATGGATTAACAGAGGAAGAGAAAGAAACTGCAGAATGTTTACTGCAAGATA
TGTATATGAATATTAAGGAGTCTAAAGCTAAAAACTAA

Upstream 100 bases:

>100_bases
TATAAAAGTACAAAAATTTCATCTTAGATATAGTTGACTAATCAACTATATTGTGATATATTGAAAAACGGTTGATAAGT
CAACTATAGGGGGAGTATAT

Downstream 100 bases:

>100_bases
TATAACTAAAGAGGAGGAAAGCTAGATATGGCTAATAGAACTAAAGAAGAAAACAATACATATAAAAACAATTGGATAAT
ACTTGCTATAGTAGTTATGT

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MKKRNLLNKYVSMIYRASQGYLDDALRKYELSSGTYPFILALYDNEGISQNALSEYVKVDKALSARAIKRLIELGYVEKI
INSKDARAYKLYLTEKAKVVVPEVRKSLDGWLNIITNGLTEEEKETAECLLQDMYMNIKESKAKN

Sequences:

>Translated_145_residues
MKKRNLLNKYVSMIYRASQGYLDDALRKYELSSGTYPFILALYDNEGISQNALSEYVKVDKALSARAIKRLIELGYVEKI
INSKDARAYKLYLTEKAKVVVPEVRKSLDGWLNIITNGLTEEEKETAECLLQDMYMNIKESKAKN
>Mature_145_residues
MKKRNLLNKYVSMIYRASQGYLDDALRKYELSSGTYPFILALYDNEGISQNALSEYVKVDKALSARAIKRLIELGYVEKI
INSKDARAYKLYLTEKAKVVVPEVRKSLDGWLNIITNGLTEEEKETAECLLQDMYMNIKESKAKN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16669; Mature: 16669

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRNLLNKYVSMIYRASQGYLDDALRKYELSSGTYPFILALYDNEGISQNALSEYVKVD
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHH
KALSARAIKRLIELGYVEKIINSKDARAYKLYLTEKAKVVVPEVRKSLDGWLNIITNGLT
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEHHHHHHHHHHHHHHHHCCCC
EEEKETAECLLQDMYMNIKESKAKN
CHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKRNLLNKYVSMIYRASQGYLDDALRKYELSSGTYPFILALYDNEGISQNALSEYVKVD
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHH
KALSARAIKRLIELGYVEKIINSKDARAYKLYLTEKAKVVVPEVRKSLDGWLNIITNGLT
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEHHHHHHHHHHHHHHHHCCCC
EEEKETAECLLQDMYMNIKESKAKN
CHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]