| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170756321
Identifier: 170756321
GI number: 170756321
Start: 2327007
End: 2328284
Strand: Reverse
Name: 170756321
Synonym: CLD_2443
Alternate gene names: NA
Gene position: 2328284-2327007 (Counterclockwise)
Preceding gene: 170757383
Following gene: 170755692
Centisome position: 58.82
GC content: 26.13
Gene sequence:
>1278_bases GTGATTAAAATTATAGATATAGATATAGATTTACTTAAAAAAGCTTATGAAGAATATAAAAATAATAAAATTACTTATGC AAAAATGTATGCCTATTATAAAGGTAATACTGATGCAATGGCTAATTATAAAATGGTTACTGAAAGGTCAAATAATAAAA CTCCAGTTAACTATATTAAGAAATTTATAAAAGAAGAAGTTAGCTACAGTGTTGGGAATGATGTAAATTATATTTCTAAG AGTGGAAATGAAAATATAGTAAATGATATAGATTACTATATTGACCATTGGAGTGAAGGACACGATAGTAATTTAGCTAA AAATATGCTTATATATTCACTTTCATATGAATTATATTATGTAGATAGAGAAGGTCAATTTTCTAGTAAAGTAATACCTC CAACACAAGGATATGCTACCATAGATGATTTTGGTAACATATCTTTTTTTATGCACTCTTATAAGCTTAAATTTGATGAT ACAACTTACATTGATGTGTACACAGATAAAGAAATATTACATTTTAATGATGAGTTTGAGAAAATTAATAAACCTACAAA ACATATTTTTGGTGCTGTGCCAGTGGCATTATGTCAATTAAGCGAAGAAGGTAAAGATGATACCTTATTTAAAGACTTGA AGGGGCTACAAGATGCTTATGAAACTAATTTATCTGACATAAGTAATGAAATAAGTGATTTTAGAAACGCTTATATGGTT CTTACTGGTGTACAGATAGATGAAAAGGACATTCCAAAAATGAAGGAACTTGGAGTTATACAAATAAAAACTAAAGATGG AAAAGCCGCATGGTTAATAAAAAATATCAACGATACATTTATCCAAAATACTTTAAATACGTTAGAAGATAAAATGTATC AACTTTCTAGCCATATAAATCATAATGAAAAAATGCAAAGTAATTTAAGTTCTTTAGCTTTAAGAGCTAGATTAATAGCT TTAGAAGAAAAATGTAAGCTTAATCAAAAATCTATTGCAGATTGTATTAAAACTAGGCTTAAATTTTTATTTATATATTT AAAAGTTATTAAAAATATTGAATATGACTTTAGAGATATAAAAATTAAGTTTACACCTAATATTCCGCAGGATGATTTAA TGACAGCACAAGTAATATCACAATTAGGTGATAAATTAAGTACCAAAACAGGTTTAAGTTTATTAAGTTTCATTGAAAAT CCTAAGAATGAGTTACAGAAGCTTAAAGATGAAAATCCAATAGACTTAGATAATATGGACTTTGGAGCTGATGAATAA
Upstream 100 bases:
>100_bases TGCTCCAGATATAACGGCTGAGTTTAGTCTAAGAATAGAAAATATTGAAGTAGTTGAAAATGTAGTATTATTGGATAGGA GAAAATTTGGTTTGTAGGAG
Downstream 100 bases:
>100_bases TGACCAGAGAAGAAGAATTTAGCCAAGGGTTATATGATGAAGCTAATGAGCAGCTAAAAGAAGTTTATAAAGAGCAGAAA CAGAATAAAGATGAATTATT
Product: SPP1 family phage portal protein
Products: NA
Alternate protein names: Portal Protein; Phage Portal Protein SPP1 Family; SPP1 Family Phage Portal Protein; Phage Related Protein; Bacteriophage Portal Protein SPP1 Gp6-Like
Number of amino acids: Translated: 425; Mature: 425
Protein sequence:
>425_residues MIKIIDIDIDLLKKAYEEYKNNKITYAKMYAYYKGNTDAMANYKMVTERSNNKTPVNYIKKFIKEEVSYSVGNDVNYISK SGNENIVNDIDYYIDHWSEGHDSNLAKNMLIYSLSYELYYVDREGQFSSKVIPPTQGYATIDDFGNISFFMHSYKLKFDD TTYIDVYTDKEILHFNDEFEKINKPTKHIFGAVPVALCQLSEEGKDDTLFKDLKGLQDAYETNLSDISNEISDFRNAYMV LTGVQIDEKDIPKMKELGVIQIKTKDGKAAWLIKNINDTFIQNTLNTLEDKMYQLSSHINHNEKMQSNLSSLALRARLIA LEEKCKLNQKSIADCIKTRLKFLFIYLKVIKNIEYDFRDIKIKFTPNIPQDDLMTAQVISQLGDKLSTKTGLSLLSFIEN PKNELQKLKDENPIDLDNMDFGADE
Sequences:
>Translated_425_residues MIKIIDIDIDLLKKAYEEYKNNKITYAKMYAYYKGNTDAMANYKMVTERSNNKTPVNYIKKFIKEEVSYSVGNDVNYISK SGNENIVNDIDYYIDHWSEGHDSNLAKNMLIYSLSYELYYVDREGQFSSKVIPPTQGYATIDDFGNISFFMHSYKLKFDD TTYIDVYTDKEILHFNDEFEKINKPTKHIFGAVPVALCQLSEEGKDDTLFKDLKGLQDAYETNLSDISNEISDFRNAYMV LTGVQIDEKDIPKMKELGVIQIKTKDGKAAWLIKNINDTFIQNTLNTLEDKMYQLSSHINHNEKMQSNLSSLALRARLIA LEEKCKLNQKSIADCIKTRLKFLFIYLKVIKNIEYDFRDIKIKFTPNIPQDDLMTAQVISQLGDKLSTKTGLSLLSFIEN PKNELQKLKDENPIDLDNMDFGADE >Mature_425_residues MIKIIDIDIDLLKKAYEEYKNNKITYAKMYAYYKGNTDAMANYKMVTERSNNKTPVNYIKKFIKEEVSYSVGNDVNYISK SGNENIVNDIDYYIDHWSEGHDSNLAKNMLIYSLSYELYYVDREGQFSSKVIPPTQGYATIDDFGNISFFMHSYKLKFDD TTYIDVYTDKEILHFNDEFEKINKPTKHIFGAVPVALCQLSEEGKDDTLFKDLKGLQDAYETNLSDISNEISDFRNAYMV LTGVQIDEKDIPKMKELGVIQIKTKDGKAAWLIKNINDTFIQNTLNTLEDKMYQLSSHINHNEKMQSNLSSLALRARLIA LEEKCKLNQKSIADCIKTRLKFLFIYLKVIKNIEYDFRDIKIKFTPNIPQDDLMTAQVISQLGDKLSTKTGLSLLSFIEN PKNELQKLKDENPIDLDNMDFGADE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49177; Mature: 49177
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKIIDIDIDLLKKAYEEYKNNKITYAKMYAYYKGNTDAMANYKMVTERSNNKTPVNYIK CEEEEECCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCHHCEEEEEECCCCCCCHHHHH KFIKEEVSYSVGNDVNYISKSGNENIVNDIDYYIDHWSEGHDSNLAKNMLIYSLSYELYY HHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHEEEEEEEEEEE VDREGQFSSKVIPPTQGYATIDDFGNISFFMHSYKLKFDDTTYIDVYTDKEILHFNDEFE EECCCCCCCCCCCCCCCCEECCCCCCEEEEEEEEEEEECCCEEEEEEECCEEEECCHHHH KINKPTKHIFGAVPVALCQLSEEGKDDTLFKDLKGLQDAYETNLSDISNEISDFRNAYMV HCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEE LTGVQIDEKDIPKMKELGVIQIKTKDGKAAWLIKNINDTFIQNTLNTLEDKMYQLSSHIN EEECEECCCCCCHHHHCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCC HNEKMQSNLSSLALRARLIALEEKCKLNQKSIADCIKTRLKFLFIYLKVIKNIEYDFRDI CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE KIKFTPNIPQDDLMTAQVISQLGDKLSTKTGLSLLSFIENPKNELQKLKDENPIDLDNMD EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCC FGADE CCCCC >Mature Secondary Structure MIKIIDIDIDLLKKAYEEYKNNKITYAKMYAYYKGNTDAMANYKMVTERSNNKTPVNYIK CEEEEECCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCHHCEEEEEECCCCCCCHHHHH KFIKEEVSYSVGNDVNYISKSGNENIVNDIDYYIDHWSEGHDSNLAKNMLIYSLSYELYY HHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHEEEEEEEEEEE VDREGQFSSKVIPPTQGYATIDDFGNISFFMHSYKLKFDDTTYIDVYTDKEILHFNDEFE EECCCCCCCCCCCCCCCCEECCCCCCEEEEEEEEEEEECCCEEEEEEECCEEEECCHHHH KINKPTKHIFGAVPVALCQLSEEGKDDTLFKDLKGLQDAYETNLSDISNEISDFRNAYMV HCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEE LTGVQIDEKDIPKMKELGVIQIKTKDGKAAWLIKNINDTFIQNTLNTLEDKMYQLSSHIN EEECEECCCCCCHHHHCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCC HNEKMQSNLSSLALRARLIALEEKCKLNQKSIADCIKTRLKFLFIYLKVIKNIEYDFRDI CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE KIKFTPNIPQDDLMTAQVISQLGDKLSTKTGLSLLSFIENPKNELQKLKDENPIDLDNMD EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCC FGADE CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA