| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is adiC [H]
Identifier: 170756313
GI number: 170756313
Start: 649280
End: 650653
Strand: Direct
Name: adiC [H]
Synonym: CLD_0221
Alternate gene names: 170756313
Gene position: 649280-650653 (Clockwise)
Preceding gene: 170757181
Following gene: 170755480
Centisome position: 16.4
GC content: 32.17
Gene sequence:
>1374_bases ATGGAGAATGAAGGTCATAGTCACAAGAAAATAGGTCTATTTGGAGCTACCTGTGTAGTTGCAGGAAATATGATTGGGTC TGGCGTATTTATGCTACCAGCTAGTTTGGCAGCAGTATCTAGTCCAGGAACTACTTTAATAGCTTGGTTAGTTACAGGTA TAGGAGCTATATTTATGGCTTTATCCTGCGCTAGATTAGGAAGTAGGATTCCCAAGACAGGGGGACCTTATGAATTTGGT AAATTAGCTTTTGGAGATTTTATAGGATTTTTAAATGCTTGGCTTTACTGGAGCGCTACGTGGATATCCAATGCAGCAAT TATAATAGCTATAGGAAGCTATGCATCTTATTTGATACCAGCTTTAAATAATGGATTTAATGCACTCTTATTTAACAGCG CTATATTATGGATATTTACTTTTTTAAATATTAAGGGCGCTAAGGAAGCTGCAAGTTTTGAAACAGTTATTACAGTATTT AAATTTTTAGTATTTATATTTTTCATAATATTTGCAGCTATTCACTTTAATGTTGCAAATATTACTCCAATTATGCCAAA AGAAAAAGGAATGAATACTTTACCTTTAGCAGCAGCTACCACATTATGGGCCTTTACAGGTTTTGAATCTTCCACAGTAG GTGCTGGAACAATTAAAGATCCAGAAAAAAATATAAGTAGAAGTACTATATTAGGTTTGGTTATAACGATTCTTTTTTAT GTTGCAATAAGCTTTTTCGCTATGGGGGCTATACCCAAAGATGTTTTAGCTAATAGTCCTTCACCAATGACAGATATATT GGCTCAATTCTTTGGTAGTGGAGTAGTAAAAGTATTTAATTTAGCTATAGTTATAACTATATTGGGAACTATAGCAGGAT GGATTATGATTGCAGGCCAGATGAGCTATGCAGTAGCTAAGGATGGGTTATTTCCAGCAGTATTTGCAAAATTACATCAT AAGTATAAAACTCCGTATAAAGGATTAATAATAAATGCTATATTAACTAATATATTATTAATATTAAATTCATCAAAGGG AATGGTATCTGCCTATAATTTTATGATACTTTTAGCCACCTTATCATATTTACCTGTTTATGCTACGACTTCTGCATCAG ATATAGTATTGCTATTTAAATGTAGGGGACAATTAAATGTAGGTAAATTTATAAAGATAGCTATAATACCATTAATGGGG TTCACCTATGCTTGTTGGGCAATATACGGTTCAGGAGCTGAAACAGTACTATATGGATTTATGTTAATGTTAGCAGGAGT CCCATTCTATATATATATGAAGTTAAAAAATAAAAAAGATATTTCTAAAGCTACTATAGATATAGATAATATTGTTGAAT GTTTTAATGAGTAA
Upstream 100 bases:
>100_bases TTAATTAAATTAAAAGGATTGACAAAATTATAACCCAATATAAAATATAAAGTAACAAAGCTTCTTATTATGAAGTTGGA GGTTGGGGGAGAGTTGAAAA
Downstream 100 bases:
>100_bases GGTGTAAATGGTTAATAATATTAATAAAAATTTTAAAGACTATTTTATATTAAAGTACATTTATTAAAATAGATGTTAAA TCAAATATTTTATATATTTA
Product: amino acid permease family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 457; Mature: 457
Protein sequence:
>457_residues MENEGHSHKKIGLFGATCVVAGNMIGSGVFMLPASLAAVSSPGTTLIAWLVTGIGAIFMALSCARLGSRIPKTGGPYEFG KLAFGDFIGFLNAWLYWSATWISNAAIIIAIGSYASYLIPALNNGFNALLFNSAILWIFTFLNIKGAKEAASFETVITVF KFLVFIFFIIFAAIHFNVANITPIMPKEKGMNTLPLAAATTLWAFTGFESSTVGAGTIKDPEKNISRSTILGLVITILFY VAISFFAMGAIPKDVLANSPSPMTDILAQFFGSGVVKVFNLAIVITILGTIAGWIMIAGQMSYAVAKDGLFPAVFAKLHH KYKTPYKGLIINAILTNILLILNSSKGMVSAYNFMILLATLSYLPVYATTSASDIVLLFKCRGQLNVGKFIKIAIIPLMG FTYACWAIYGSGAETVLYGFMLMLAGVPFYIYMKLKNKKDISKATIDIDNIVECFNE
Sequences:
>Translated_457_residues MENEGHSHKKIGLFGATCVVAGNMIGSGVFMLPASLAAVSSPGTTLIAWLVTGIGAIFMALSCARLGSRIPKTGGPYEFG KLAFGDFIGFLNAWLYWSATWISNAAIIIAIGSYASYLIPALNNGFNALLFNSAILWIFTFLNIKGAKEAASFETVITVF KFLVFIFFIIFAAIHFNVANITPIMPKEKGMNTLPLAAATTLWAFTGFESSTVGAGTIKDPEKNISRSTILGLVITILFY VAISFFAMGAIPKDVLANSPSPMTDILAQFFGSGVVKVFNLAIVITILGTIAGWIMIAGQMSYAVAKDGLFPAVFAKLHH KYKTPYKGLIINAILTNILLILNSSKGMVSAYNFMILLATLSYLPVYATTSASDIVLLFKCRGQLNVGKFIKIAIIPLMG FTYACWAIYGSGAETVLYGFMLMLAGVPFYIYMKLKNKKDISKATIDIDNIVECFNE >Mature_457_residues MENEGHSHKKIGLFGATCVVAGNMIGSGVFMLPASLAAVSSPGTTLIAWLVTGIGAIFMALSCARLGSRIPKTGGPYEFG KLAFGDFIGFLNAWLYWSATWISNAAIIIAIGSYASYLIPALNNGFNALLFNSAILWIFTFLNIKGAKEAASFETVITVF KFLVFIFFIIFAAIHFNVANITPIMPKEKGMNTLPLAAATTLWAFTGFESSTVGAGTIKDPEKNISRSTILGLVITILFY VAISFFAMGAIPKDVLANSPSPMTDILAQFFGSGVVKVFNLAIVITILGTIAGWIMIAGQMSYAVAKDGLFPAVFAKLHH KYKTPYKGLIINAILTNILLILNSSKGMVSAYNFMILLATLSYLPVYATTSASDIVLLFKCRGQLNVGKFIKIAIIPLMG FTYACWAIYGSGAETVLYGFMLMLAGVPFYIYMKLKNKKDISKATIDIDNIVECFNE
Specific function: Major component of the acid-resistance (AR) system allowing enteric pathogens to survive the acidic environment in the stomach. Exchanges extracellular arginine for its intracellular decarboxylation product agmatine (Agm) thereby expelling intracellular p
COG id: COG0531
COG function: function code E; Amino acid transporters
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]
Homologues:
Organism=Homo sapiens, GI33286428, Length=458, Percent_Identity=26.8558951965066, Blast_Score=117, Evalue=3e-26, Organism=Homo sapiens, GI186910308, Length=363, Percent_Identity=25.6198347107438, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI186910306, Length=363, Percent_Identity=25.6198347107438, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI186910304, Length=363, Percent_Identity=25.6198347107438, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI115648063, Length=362, Percent_Identity=25.6906077348066, Blast_Score=105, Evalue=8e-23, Organism=Homo sapiens, GI115648022, Length=362, Percent_Identity=25.6906077348066, Blast_Score=105, Evalue=8e-23, Organism=Homo sapiens, GI187423910, Length=472, Percent_Identity=23.3050847457627, Blast_Score=79, Evalue=8e-15, Organism=Homo sapiens, GI7657591, Length=472, Percent_Identity=23.3050847457627, Blast_Score=79, Evalue=8e-15, Organism=Homo sapiens, GI71979932, Length=368, Percent_Identity=23.6413043478261, Blast_Score=78, Evalue=2e-14, Organism=Homo sapiens, GI258614005, Length=393, Percent_Identity=22.64631043257, Blast_Score=76, Evalue=6e-14, Organism=Homo sapiens, GI258614003, Length=391, Percent_Identity=22.5063938618926, Blast_Score=76, Evalue=7e-14, Organism=Homo sapiens, GI7657683, Length=423, Percent_Identity=23.1678486997636, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI71999149, Length=361, Percent_Identity=24.0997229916898, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI258645169, Length=393, Percent_Identity=21.6284987277354, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI9790235, Length=367, Percent_Identity=23.433242506812, Blast_Score=68, Evalue=2e-11, Organism=Escherichia coli, GI2367353, Length=460, Percent_Identity=31.9565217391304, Blast_Score=210, Evalue=1e-55, Organism=Escherichia coli, GI1787890, Length=459, Percent_Identity=26.797385620915, Blast_Score=153, Evalue=2e-38, Organism=Escherichia coli, GI1790575, Length=354, Percent_Identity=32.4858757062147, Blast_Score=148, Evalue=7e-37, Organism=Escherichia coli, GI1786908, Length=442, Percent_Identity=26.4705882352941, Blast_Score=140, Evalue=2e-34, Organism=Escherichia coli, GI87082250, Length=337, Percent_Identity=28.1899109792285, Blast_Score=109, Evalue=4e-25, Organism=Escherichia coli, GI1790653, Length=401, Percent_Identity=21.6957605985037, Blast_Score=72, Evalue=8e-14, Organism=Escherichia coli, GI1786302, Length=356, Percent_Identity=21.0674157303371, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI1788480, Length=320, Percent_Identity=24.375, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI87081708, Length=448, Percent_Identity=21.6517857142857, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786694, Length=250, Percent_Identity=24, Blast_Score=66, Evalue=5e-12, Organism=Escherichia coli, GI1790584, Length=288, Percent_Identity=27.0833333333333, Blast_Score=63, Evalue=4e-11, Organism=Escherichia coli, GI1786789, Length=352, Percent_Identity=20.4545454545455, Blast_Score=62, Evalue=8e-11, Organism=Caenorhabditis elegans, GI71982612, Length=357, Percent_Identity=26.6106442577031, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI71982608, Length=357, Percent_Identity=26.6106442577031, Blast_Score=100, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17540018, Length=467, Percent_Identity=23.5546038543897, Blast_Score=91, Evalue=1e-18, Organism=Caenorhabditis elegans, GI71982623, Length=260, Percent_Identity=29.2307692307692, Blast_Score=88, Evalue=1e-17, Organism=Caenorhabditis elegans, GI32566699, Length=449, Percent_Identity=23.8307349665924, Blast_Score=82, Evalue=6e-16, Organism=Caenorhabditis elegans, GI71995382, Length=350, Percent_Identity=21.7142857142857, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71995388, Length=351, Percent_Identity=22.5071225071225, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17568033, Length=485, Percent_Identity=22.8865979381443, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17533459, Length=386, Percent_Identity=23.0569948186528, Blast_Score=76, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71990446, Length=499, Percent_Identity=21.0420841683367, Blast_Score=76, Evalue=5e-14, Organism=Caenorhabditis elegans, GI71993915, Length=354, Percent_Identity=21.4689265536723, Blast_Score=75, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17532491, Length=456, Percent_Identity=22.1491228070175, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17531343, Length=409, Percent_Identity=21.5158924205379, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI45550968, Length=455, Percent_Identity=24.1758241758242, Blast_Score=104, Evalue=2e-22, Organism=Drosophila melanogaster, GI19921172, Length=455, Percent_Identity=24.1758241758242, Blast_Score=104, Evalue=2e-22, Organism=Drosophila melanogaster, GI24641995, Length=368, Percent_Identity=24.7282608695652, Blast_Score=100, Evalue=4e-21, Organism=Drosophila melanogaster, GI24641993, Length=368, Percent_Identity=24.7282608695652, Blast_Score=99, Evalue=6e-21, Organism=Drosophila melanogaster, GI221512776, Length=365, Percent_Identity=24.6575342465753, Blast_Score=98, Evalue=1e-20, Organism=Drosophila melanogaster, GI24666159, Length=366, Percent_Identity=24.5901639344262, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI21357367, Length=466, Percent_Identity=25.7510729613734, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI24651635, Length=453, Percent_Identity=21.6335540838852, Blast_Score=85, Evalue=8e-17, Organism=Drosophila melanogaster, GI24651633, Length=453, Percent_Identity=21.6335540838852, Blast_Score=85, Evalue=8e-17, Organism=Drosophila melanogaster, GI221331183, Length=465, Percent_Identity=23.8709677419355, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI17647653, Length=465, Percent_Identity=23.8709677419355, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI24664379, Length=465, Percent_Identity=23.8709677419355, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI24667468, Length=388, Percent_Identity=23.1958762886598, Blast_Score=79, Evalue=8e-15, Organism=Drosophila melanogaster, GI24668806, Length=398, Percent_Identity=23.3668341708543, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI21356285, Length=398, Percent_Identity=23.3668341708543, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI24668802, Length=398, Percent_Identity=23.3668341708543, Blast_Score=79, Evalue=9e-15, Organism=Drosophila melanogaster, GI281366235, Length=393, Percent_Identity=22.3918575063613, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007820, Length=393, Percent_Identity=22.3918575063613, Blast_Score=71, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004841 - InterPro: IPR002293 [H]
Pfam domain/function: PF00324 AA_permease [H]
EC number: NA
Molecular weight: Translated: 49349; Mature: 49349
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENEGHSHKKIGLFGATCVVAGNMIGSGVFMLPASLAAVSSPGTTLIAWLVTGIGAIFMA CCCCCCCCCEEEEEHHHHHHHCCHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH LSCARLGSRIPKTGGPYEFGKLAFGDFIGFLNAWLYWSATWISNAAIIIAIGSYASYLIP HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH ALNNGFNALLFNSAILWIFTFLNIKGAKEAASFETVITVFKFLVFIFFIIFAAIHFNVAN HHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHC ITPIMPKEKGMNTLPLAAATTLWAFTGFESSTVGAGTIKDPEKNISRSTILGLVITILFY CCCCCCCCCCCCCCCHHHHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH VAISFFAMGAIPKDVLANSPSPMTDILAQFFGSGVVKVFNLAIVITILGTIAGWIMIAGQ HHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC MSYAVAKDGLFPAVFAKLHHKYKTPYKGLIINAILTNILLILNSSKGMVSAYNFMILLAT HHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH LSYLPVYATTSASDIVLLFKCRGQLNVGKFIKIAIIPLMGFTYACWAIYGSGAETVLYGF HHHCCEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH MLMLAGVPFYIYMKLKNKKDISKATIDIDNIVECFNE HHHHCCCCEEEEEEECCCCCCHHHHCCHHHHHHHHCC >Mature Secondary Structure MENEGHSHKKIGLFGATCVVAGNMIGSGVFMLPASLAAVSSPGTTLIAWLVTGIGAIFMA CCCCCCCCCEEEEEHHHHHHHCCHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH LSCARLGSRIPKTGGPYEFGKLAFGDFIGFLNAWLYWSATWISNAAIIIAIGSYASYLIP HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHH ALNNGFNALLFNSAILWIFTFLNIKGAKEAASFETVITVFKFLVFIFFIIFAAIHFNVAN HHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHC ITPIMPKEKGMNTLPLAAATTLWAFTGFESSTVGAGTIKDPEKNISRSTILGLVITILFY CCCCCCCCCCCCCCCHHHHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH VAISFFAMGAIPKDVLANSPSPMTDILAQFFGSGVVKVFNLAIVITILGTIAGWIMIAGQ HHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC MSYAVAKDGLFPAVFAKLHHKYKTPYKGLIINAILTNILLILNSSKGMVSAYNFMILLAT HHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH LSYLPVYATTSASDIVLLFKCRGQLNVGKFIKIAIIPLMGFTYACWAIYGSGAETVLYGF HHHCCEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH MLMLAGVPFYIYMKLKNKKDISKATIDIDNIVECFNE HHHHCCCCEEEEEEECCCCCCHHHHCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]