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The map label for this gene is atpD

Identifier: 170756277

GI number: 170756277

Start: 190739

End: 192130

Strand: Direct

Name: atpD

Synonym: CLD_0629

Alternate gene names: 170756277

Gene position: 190739-192130 (Clockwise)

Preceding gene: 170755934

Following gene: 170757042

Centisome position: 4.82

GC content: 33.76

Gene sequence:

>1392_bases
GTGTCAAATTTAGGTAAAGTAATACAAATAATAGGACCGATTATAGATATAAAATTTGATTCGGAAAATCTTCCAGATTT
GTTTAATGCATTAGAAATAAATGCTGGTGATAGAAAAGTTATAGCTGAAGTTGAACAACATATAGGAGATGATACTATTA
GAGCTATAGCCATGGAAGATACTGAAGGCCTAAAACGAGGTATGGAAGCTTTAGATACAGGAAAATCCGTTTCAGTACCA
GTAGGTAAAGAAGTTTTAGGAAGATTGTTTAATGTTTTAGGAAAGCCTATAGATGGAGCAGGAGAATTTACATCAGAAGA
ATCCTATCCTATTCATAGGCCAGCTCCAAGTTTTGAGGAACAATCCGTAGAGCCAGAAATATTTGAAACAGGCATAAAAG
TAATAGATCTTTTAGCACCCTATCAAAAAGGTGGTAAAATAGGATTGTTTGGAGGAGCAGGAGTAGGAAAAACTGTATTA
ATACAGGAATTAATAAATAATATAGCTAAAGAGCATGGAGGATTATCAGTATTTACAGGTGTTGGAGAAAGAACAAGAGA
AGGAAATGATCTTTACTATGAAATGAAGGAATCAGGTGTTTTAGAAAAAACAGCATTAGTATTTGGTCAAATGAATGAAC
CACCAGGAGCTAGAATGAGGGTAGCCCTTACAGGTTTAACAATGTCAGAATATTTTAGAGACCAAGGTCAAGATGTATTA
TTATTTATAGATAACATTTTTAGATTCACTCAAGCAGGATCAGAAGTTTCAGCTCTTTTAGGAAGAATTCCAAGTGCCGT
TGGATATCAACCAACTTTAGCTACTGAGATGGGAGCGCTTCAAGAAAGAATAACATCTACAAAAAATGGTTCTATAACAT
CTGTTCAAGCAGTATATGTTCCAGCAGATGATTTAACAGATCCAGCACCAGCGACAACATTTGCTCATTTAGATGCTACA
ACAGTTTTATCCAGAGCTATAACAGAACTTGGTATTTATCCAGCAGTAGATCCATTAGAATCTTCATCTAGAATGTTAGA
TCCTAGAATAATAGGCGAAGAACATTATGAGGTAGCTATAAAGGTTAAAAATATACTTGAAAGATATAGAGAGCTTCAAG
ATATAATAGCTATATTGGGTATAGATGAACTTTCAGAAGAAGATAAGTTAGTGGTTGGCAGAGCAAGAAAAATACAAAGA
TTTTTATCTCAACCATTTACAGTAGCAGAACAATTTACAGGAATGCAGGGTAAATATGTGCCTATAAAAGAAACTGTTAG
AGGTTTTAAAGAAATATTGGAAGGCAAACATGATAATATTCCAGAATCAGCTTTCTTATTCCAAGGAACTATAGAGGATG
TTTTAAAGAAAGCACAACAAATGGAAATATAA

Upstream 100 bases:

>100_bases
TTAGATCTACAATTTAATAGATTAAGACAAAGTGCTATTACACAAGAAATATCAGAAATAGTTGGTGGTGCAGAAGCTCA
AAGGTAGGAGGTGTACTATA

Downstream 100 bases:

>100_bases
TTAGGTTAATAAGAGGAGAATAATATGAAAGATAATATAGAACTTACTATATTTACTCCTGAAAAAAATATTAAAATTGG
AGAGATAAAAGAAGTAATAA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 463; Mature: 462

Protein sequence:

>463_residues
MSNLGKVIQIIGPIIDIKFDSENLPDLFNALEINAGDRKVIAEVEQHIGDDTIRAIAMEDTEGLKRGMEALDTGKSVSVP
VGKEVLGRLFNVLGKPIDGAGEFTSEESYPIHRPAPSFEEQSVEPEIFETGIKVIDLLAPYQKGGKIGLFGGAGVGKTVL
IQELINNIAKEHGGLSVFTGVGERTREGNDLYYEMKESGVLEKTALVFGQMNEPPGARMRVALTGLTMSEYFRDQGQDVL
LFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGALQERITSTKNGSITSVQAVYVPADDLTDPAPATTFAHLDAT
TVLSRAITELGIYPAVDPLESSSRMLDPRIIGEEHYEVAIKVKNILERYRELQDIIAILGIDELSEEDKLVVGRARKIQR
FLSQPFTVAEQFTGMQGKYVPIKETVRGFKEILEGKHDNIPESAFLFQGTIEDVLKKAQQMEI

Sequences:

>Translated_463_residues
MSNLGKVIQIIGPIIDIKFDSENLPDLFNALEINAGDRKVIAEVEQHIGDDTIRAIAMEDTEGLKRGMEALDTGKSVSVP
VGKEVLGRLFNVLGKPIDGAGEFTSEESYPIHRPAPSFEEQSVEPEIFETGIKVIDLLAPYQKGGKIGLFGGAGVGKTVL
IQELINNIAKEHGGLSVFTGVGERTREGNDLYYEMKESGVLEKTALVFGQMNEPPGARMRVALTGLTMSEYFRDQGQDVL
LFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGALQERITSTKNGSITSVQAVYVPADDLTDPAPATTFAHLDAT
TVLSRAITELGIYPAVDPLESSSRMLDPRIIGEEHYEVAIKVKNILERYRELQDIIAILGIDELSEEDKLVVGRARKIQR
FLSQPFTVAEQFTGMQGKYVPIKETVRGFKEILEGKHDNIPESAFLFQGTIEDVLKKAQQMEI
>Mature_462_residues
SNLGKVIQIIGPIIDIKFDSENLPDLFNALEINAGDRKVIAEVEQHIGDDTIRAIAMEDTEGLKRGMEALDTGKSVSVPV
GKEVLGRLFNVLGKPIDGAGEFTSEESYPIHRPAPSFEEQSVEPEIFETGIKVIDLLAPYQKGGKIGLFGGAGVGKTVLI
QELINNIAKEHGGLSVFTGVGERTREGNDLYYEMKESGVLEKTALVFGQMNEPPGARMRVALTGLTMSEYFRDQGQDVLL
FIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGALQERITSTKNGSITSVQAVYVPADDLTDPAPATTFAHLDATT
VLSRAITELGIYPAVDPLESSSRMLDPRIIGEEHYEVAIKVKNILERYRELQDIIAILGIDELSEEDKLVVGRARKIQRF
LSQPFTVAEQFTGMQGKYVPIKETVRGFKEILEGKHDNIPESAFLFQGTIEDVLKKAQQMEI

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=464, Percent_Identity=69.1810344827586, Blast_Score=659, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=394, Percent_Identity=26.9035532994924, Blast_Score=126, Evalue=3e-29,
Organism=Homo sapiens, GI19913428, Length=361, Percent_Identity=26.0387811634349, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI19913426, Length=352, Percent_Identity=25, Blast_Score=105, Evalue=9e-23,
Organism=Homo sapiens, GI50345984, Length=411, Percent_Identity=25.7907542579075, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI4757810, Length=411, Percent_Identity=25.7907542579075, Blast_Score=103, Evalue=4e-22,
Organism=Escherichia coli, GI1790170, Length=457, Percent_Identity=65.4266958424508, Blast_Score=635, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=313, Percent_Identity=31.629392971246, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1790172, Length=401, Percent_Identity=26.9326683291771, Blast_Score=127, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI25144756, Length=464, Percent_Identity=68.3189655172414, Blast_Score=652, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=358, Percent_Identity=28.4916201117318, Blast_Score=132, Evalue=5e-31,
Organism=Caenorhabditis elegans, GI17510931, Length=355, Percent_Identity=25.3521126760563, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17570191, Length=354, Percent_Identity=25.1412429378531, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71988080, Length=424, Percent_Identity=24.7641509433962, Blast_Score=101, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71988063, Length=402, Percent_Identity=25.6218905472637, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71988074, Length=383, Percent_Identity=24.5430809399478, Blast_Score=84, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6322581, Length=457, Percent_Identity=71.9912472647702, Blast_Score=663, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=352, Percent_Identity=26.9886363636364, Blast_Score=116, Evalue=7e-27,
Organism=Saccharomyces cerevisiae, GI6319370, Length=376, Percent_Identity=26.3297872340426, Blast_Score=97, Evalue=4e-21,
Organism=Saccharomyces cerevisiae, GI6320016, Length=230, Percent_Identity=27.3913043478261, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24638766, Length=464, Percent_Identity=68.9655172413793, Blast_Score=651, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=465, Percent_Identity=67.741935483871, Blast_Score=622, Evalue=1e-178,
Organism=Drosophila melanogaster, GI24583988, Length=360, Percent_Identity=26.6666666666667, Blast_Score=129, Evalue=4e-30,
Organism=Drosophila melanogaster, GI24583986, Length=360, Percent_Identity=26.6666666666667, Blast_Score=129, Evalue=4e-30,
Organism=Drosophila melanogaster, GI24583984, Length=360, Percent_Identity=26.6666666666667, Blast_Score=129, Evalue=4e-30,
Organism=Drosophila melanogaster, GI24583992, Length=360, Percent_Identity=27.2222222222222, Blast_Score=129, Evalue=4e-30,
Organism=Drosophila melanogaster, GI20129479, Length=346, Percent_Identity=26.5895953757225, Blast_Score=127, Evalue=2e-29,
Organism=Drosophila melanogaster, GI281361666, Length=405, Percent_Identity=25.679012345679, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24646341, Length=405, Percent_Identity=25.679012345679, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI17136796, Length=405, Percent_Identity=25.679012345679, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24658560, Length=418, Percent_Identity=26.0765550239234, Blast_Score=104, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24638768, Length=91, Percent_Identity=49.4505494505495, Blast_Score=102, Evalue=6e-22,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50760; Mature: 50628

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLGKVIQIIGPIIDIKFDSENLPDLFNALEINAGDRKVIAEVEQHIGDDTIRAIAMED
CCCHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHEEEEECC
TEGLKRGMEALDTGKSVSVPVGKEVLGRLFNVLGKPIDGAGEFTSEESYPIHRPAPSFEE
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH
QSVEPEIFETGIKVIDLLAPYQKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGLSVFTG
CCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
VGERTREGNDLYYEMKESGVLEKTALVFGQMNEPPGARMRVALTGLTMSEYFRDQGQDVL
CCCCCCCCCCEEEEEHHCCCHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHCCCCEEE
LFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGALQERITSTKNGSITSVQAVYV
EHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
PADDLTDPAPATTFAHLDATTVLSRAITELGIYPAVDPLESSSRMLDPRIIGEEHYEVAI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCHHEEEH
KVKNILERYRELQDIIAILGIDELSEEDKLVVGRARKIQRFLSQPFTVAEQFTGMQGKYV
HHHHHHHHHHHHHHHHHHHCCHHCCCCCCEEHHHHHHHHHHHCCCHHHHHHHCCCCCCCC
PIKETVRGFKEILEGKHDNIPESAFLFQGTIEDVLKKAQQMEI
CHHHHHHHHHHHHCCCCCCCCCHHHEECCHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNLGKVIQIIGPIIDIKFDSENLPDLFNALEINAGDRKVIAEVEQHIGDDTIRAIAMED
CCHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCHHEEEEECC
TEGLKRGMEALDTGKSVSVPVGKEVLGRLFNVLGKPIDGAGEFTSEESYPIHRPAPSFEE
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH
QSVEPEIFETGIKVIDLLAPYQKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGLSVFTG
CCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
VGERTREGNDLYYEMKESGVLEKTALVFGQMNEPPGARMRVALTGLTMSEYFRDQGQDVL
CCCCCCCCCCEEEEEHHCCCHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHCCCCEEE
LFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGALQERITSTKNGSITSVQAVYV
EHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEE
PADDLTDPAPATTFAHLDATTVLSRAITELGIYPAVDPLESSSRMLDPRIIGEEHYEVAI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCHHEEEH
KVKNILERYRELQDIIAILGIDELSEEDKLVVGRARKIQRFLSQPFTVAEQFTGMQGKYV
HHHHHHHHHHHHHHHHHHHCCHHCCCCCCEEHHHHHHHHHHHCCCHHHHHHHCCCCCCCC
PIKETVRGFKEILEGKHDNIPESAFLFQGTIEDVLKKAQQMEI
CHHHHHHHHHHHHCCCCCCCCCHHHEECCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA